Wall clock time and date at job start Mon Mar 30 2020 01:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47079 * 2 1 4 4 C 1.46498 * 119.99943 * 93.18913 * 3 2 1 5 5 C 1.50703 * 109.47373 * 86.57780 * 4 3 2 6 6 H 1.07999 * 119.99573 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99938 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00104 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47510 * 60.00121 * 9 7 5 11 11 H 1.48503 * 109.47040 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47324 * 300.00081 * 9 7 5 13 13 C 1.34778 * 119.99818 * 273.18359 * 3 2 1 14 14 O 1.21278 * 120.00149 * 4.87180 * 13 3 2 15 15 C 1.50700 * 119.99923 * 184.86530 * 13 3 2 16 16 H 1.08999 * 109.47025 * 42.63356 * 15 13 3 17 17 C 1.52998 * 109.47045 * 282.63558 * 15 13 3 18 18 O 1.42898 * 109.47253 * 162.63544 * 15 13 3 19 19 C 1.35903 * 117.00147 * 204.98325 * 18 15 13 20 20 C 1.38728 * 120.05489 * 173.34630 * 19 18 15 21 21 C 1.38146 * 119.94089 * 179.74422 * 20 19 18 22 22 C 1.38270 * 120.05783 * 0.50820 * 21 20 19 23 23 C 1.38270 * 120.10821 * 359.76507 * 22 21 20 24 24 C 1.38147 * 120.05563 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47354 * 299.99953 * 1 2 3 27 27 H 1.09003 * 109.46673 * 60.00482 * 1 2 3 28 28 H 1.08995 * 109.47724 * 239.99766 * 2 1 3 29 29 H 1.09002 * 109.47179 * 119.99653 * 2 1 3 30 30 H 1.09001 * 109.47166 * 206.57801 * 4 3 2 31 31 H 1.08998 * 109.47155 * 326.57645 * 4 3 2 32 32 H 0.96993 * 119.99592 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47179 * 293.73635 * 17 15 13 34 34 H 1.08992 * 109.47539 * 53.73663 * 17 15 13 35 35 H 1.08998 * 109.47263 * 173.74329 * 17 15 13 36 36 H 1.07997 * 120.03184 * 359.97438 * 20 19 18 37 37 H 1.07998 * 119.96985 * 180.27617 * 21 20 19 38 38 H 1.07989 * 119.94735 * 179.74657 * 22 21 20 39 39 H 1.07998 * 119.97018 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.02659 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3290 2.0483 1.2668 5 6 3.7484 1.7350 1.6646 6 1 4.3579 1.1019 1.0368 7 6 4.2688 2.2566 2.8300 8 7 3.5263 3.0271 3.5947 9 14 6.0284 1.8688 3.3228 10 1 6.9556 2.3517 2.2682 11 1 6.3432 2.5449 4.6069 12 1 6.1849 0.4010 3.4853 13 6 2.1818 2.0382 -1.1654 14 8 1.8419 1.5186 -2.2073 15 6 2.7868 3.4184 -1.1740 16 1 3.6363 3.4469 -0.4916 17 6 1.7379 4.4378 -0.7253 18 8 3.2265 3.7376 -2.4956 19 6 4.2232 4.6544 -2.6097 20 6 4.7934 4.9103 -3.8482 21 6 5.8028 5.8466 -3.9624 22 6 6.2519 6.5209 -2.8419 23 6 5.6890 6.2635 -1.6054 24 6 4.6757 5.3320 -1.4869 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2144 3.1257 1.1477 31 1 1.6481 1.6939 2.0406 32 1 3.8926 3.3943 4.4143 33 1 0.9406 4.4891 -1.4669 34 1 1.3219 4.1326 0.2348 35 1 2.2037 5.4180 -0.6244 36 1 4.4461 4.3807 -4.7230 37 1 6.2440 6.0494 -4.9270 38 1 7.0438 7.2494 -2.9325 39 1 6.0418 6.7911 -0.7317 40 1 4.2367 5.1311 -0.5209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103207765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:23 Heat of formation + Delta-G solvation = -63.620521 kcal Electronic energy + Delta-G solvation = -22038.683139 eV Core-core repulsion = 18818.306004 eV Total energy + Delta-G solvation = -3220.377134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70528 -40.42952 -38.29392 -37.00760 -34.77396 -33.64850 -31.93631 -31.32688 -30.52008 -29.00798 -26.04194 -24.94777 -24.29584 -23.51587 -22.56271 -20.10166 -19.42537 -18.68609 -17.88858 -17.53263 -16.78514 -16.62867 -16.53385 -16.16967 -15.69853 -15.36466 -14.88367 -14.56329 -14.49349 -14.33420 -14.05599 -13.83221 -13.58288 -13.35644 -13.20441 -13.05701 -12.86113 -12.71010 -12.51193 -12.42881 -12.16097 -12.06211 -11.85142 -11.71571 -11.67680 -10.77912 -10.55403 -9.93322 -9.57433 -9.17235 -8.23747 -6.38060 0.40412 0.48789 1.40292 1.40604 1.45059 1.51083 1.76399 2.36467 2.64571 2.86188 3.06446 3.45315 3.82087 3.94678 3.96151 4.04331 4.17449 4.29200 4.36948 4.40185 4.50593 4.52336 4.57738 4.64542 4.75815 4.76190 4.87590 4.99447 5.03213 5.10388 5.20700 5.30296 5.40164 5.50498 5.60415 5.61402 5.75250 5.89043 6.00690 6.37331 6.47063 6.73678 7.15685 7.34573 8.81422 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.007244 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.998834 B = 3864.480143 C = 5523.444544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.591 5.591 4 C 0.237 3.763 5 C -0.555 4.555 6 H 0.049 0.951 7 C 0.031 3.969 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.273 1.273 13 C 0.516 3.484 14 O -0.579 6.579 15 C 0.074 3.926 16 H 0.099 0.901 17 C -0.165 4.165 18 O -0.312 6.312 19 C 0.103 3.897 20 C -0.168 4.168 21 C -0.078 4.078 22 C -0.157 4.157 23 C -0.087 4.087 24 C -0.223 4.223 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.270 0.730 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 5.625 -7.719 9.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.117 3.883 5 C -0.593 4.593 6 H 0.067 0.933 7 C -0.171 4.171 8 N -0.550 5.550 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.199 1.199 13 C 0.304 3.696 14 O -0.460 6.460 15 C 0.015 3.985 16 H 0.116 0.884 17 C -0.222 4.222 18 O -0.226 6.226 19 C 0.058 3.942 20 C -0.186 4.186 21 C -0.096 4.096 22 C -0.175 4.175 23 C -0.105 4.105 24 C -0.241 4.241 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.151 0.849 37 H 0.179 0.821 38 H 0.173 0.827 39 H 0.160 0.840 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.524 5.332 -8.196 9.896 hybrid contribution 0.739 -0.373 0.912 1.232 sum 2.263 4.958 -7.284 9.098 Atomic orbital electron populations 1.22013 0.94486 1.03198 1.01385 1.21467 0.95434 0.81842 1.02448 1.48191 1.62916 1.14291 1.06770 1.19452 0.95229 0.93820 0.79795 1.21616 0.98584 1.31720 1.07387 0.93284 1.25524 1.01216 0.94470 0.95858 1.69968 1.37958 1.32965 1.14149 0.85757 0.80533 0.78625 0.77738 1.19915 1.20295 1.19865 1.20276 0.78601 0.87187 0.83559 1.90585 1.52746 1.69830 1.32864 1.22144 0.99398 0.93331 0.83643 0.88374 1.22308 0.98485 0.98708 1.02682 1.86091 1.50444 1.57186 1.28878 1.19487 0.88927 0.90021 0.95753 1.20722 0.99953 1.02810 0.95146 1.21334 0.94301 0.93525 1.00412 1.21454 1.02002 1.02115 0.91946 1.21289 0.94145 0.95780 0.99269 1.21532 1.02937 1.01749 0.97921 0.89273 0.92482 0.93870 0.91772 0.89689 0.93463 0.95310 0.92099 0.90950 0.89666 0.89685 0.84945 0.82086 0.82733 0.84018 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 10.22 71.98 0.74 -4.00 16 2 C 0.11 4.09 6.07 86.38 0.52 4.61 16 3 N -0.59 -25.22 2.46 -826.16 -2.03 -27.25 16 4 C 0.24 10.97 4.68 85.63 0.40 11.37 16 5 C -0.55 -28.20 8.95 25.60 0.23 -27.97 16 6 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 7 C 0.03 1.57 5.46 84.66 0.46 2.03 16 8 N -0.91 -47.99 13.29 21.45 0.28 -47.70 16 9 Si 0.95 40.82 29.54 68.60 2.03 42.84 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 C 0.52 22.96 6.94 87.66 0.61 23.57 16 14 O -0.58 -28.24 16.27 15.41 0.25 -27.99 16 15 C 0.07 3.00 1.81 29.85 0.05 3.05 16 16 H 0.10 4.24 5.36 -2.39 -0.01 4.23 16 17 C -0.16 -5.66 8.82 71.98 0.63 -5.02 16 18 O -0.31 -12.71 9.39 -74.02 -0.70 -13.40 16 19 C 0.10 3.62 6.60 22.50 0.15 3.77 16 20 C -0.17 -4.90 9.99 22.37 0.22 -4.67 16 21 C -0.08 -1.74 10.04 22.26 0.22 -1.52 16 22 C -0.16 -3.42 10.04 22.28 0.22 -3.20 16 23 C -0.09 -2.29 10.04 22.26 0.22 -2.06 16 24 C -0.22 -7.30 8.30 22.37 0.19 -7.12 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 2.42 7.59 -2.39 -0.02 2.40 16 29 H 0.08 3.05 8.05 -2.39 -0.02 3.03 16 30 H 0.05 2.19 4.39 -2.39 -0.01 2.18 16 31 H 0.03 1.39 8.10 -2.39 -0.02 1.37 16 32 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.07 2.37 8.14 -2.38 -0.02 2.36 16 34 H 0.08 2.98 5.86 -2.39 -0.01 2.97 16 35 H 0.08 2.63 6.78 -2.39 -0.02 2.61 16 36 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 38 H 0.16 2.28 8.06 -2.92 -0.02 2.25 16 39 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.12 4.26 5.31 -2.91 -0.02 4.25 16 Total: -1.00 -61.95 332.59 5.74 -56.21 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 1.03 Total: 24.46 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 4.88 Total: -7.16 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -1.75 Total: -74.95 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.44 Total: -41.39 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -61.95 5.74 -56.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.413 kcal (2) G-P(sol) polarization free energy of solvation -61.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds