Wall clock time and date at job start Mon Mar 30 2020 01:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46883 * 2 1 4 4 C 1.46504 * 119.99888 * 269.99740 * 3 2 1 5 5 C 1.50696 * 109.47455 * 270.00102 * 4 3 2 6 6 H 1.07999 * 120.00088 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99876 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47298 * 59.99867 * 9 7 5 11 11 H 1.48499 * 109.46881 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46986 * 300.00120 * 9 7 5 13 13 C 1.34777 * 119.99851 * 90.00589 * 3 2 1 14 14 O 1.21279 * 119.99740 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99843 * 359.97438 * 13 3 2 16 16 O 1.42903 * 109.46938 * 180.02562 * 15 13 3 17 17 C 1.35900 * 117.00220 * 180.02562 * 16 15 13 18 18 C 1.38749 * 120.05349 * 0.02562 * 17 16 15 19 19 C 1.38119 * 119.94390 * 179.97438 * 18 17 16 20 20 C 1.38285 * 120.05600 * 359.74265 * 19 18 17 21 21 C 1.38242 * 120.10971 * 0.51459 * 20 19 18 22 22 C 1.50706 * 119.97255 * 179.76825 * 21 20 19 23 23 C 1.38164 * 120.05477 * 359.48677 * 21 20 19 24 24 H 1.08993 * 109.47389 * 60.00344 * 1 2 3 25 25 H 1.09001 * 109.47043 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47207 * 299.99711 * 1 2 3 27 27 H 1.09005 * 109.47383 * 240.00069 * 2 1 3 28 28 H 1.09005 * 109.47532 * 120.00005 * 2 1 3 29 29 H 1.09002 * 109.46922 * 30.00742 * 4 3 2 30 30 H 1.09001 * 109.46417 * 150.00011 * 4 3 2 31 31 H 0.97001 * 120.00160 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47087 * 60.00565 * 15 13 3 33 33 H 1.08997 * 109.47599 * 300.00347 * 15 13 3 34 34 H 1.08004 * 120.02880 * 359.95538 * 18 17 16 35 35 H 1.08003 * 119.97250 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.94810 * 180.27303 * 20 19 18 37 37 H 1.09001 * 109.46953 * 269.71760 * 22 21 20 38 38 H 1.09000 * 109.47318 * 29.71358 * 22 21 20 39 39 H 1.09000 * 109.47161 * 149.71989 * 22 21 20 40 40 H 1.08002 * 120.02382 * 180.23677 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2304 -1.0963 7 6 4.1492 2.3907 -2.8775 8 7 3.3494 3.1275 -3.6171 9 14 5.9132 2.0966 -3.4172 10 1 6.1401 0.6399 -3.5955 11 1 6.1610 2.7978 -4.7025 12 1 6.8411 2.6189 -2.3820 13 6 2.2430 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3005 2.1819 3.5585 17 6 2.1275 1.6921 4.8143 18 6 1.6700 0.3951 4.9974 19 6 1.4955 -0.1006 6.2747 20 6 1.7814 0.6930 7.3706 21 6 2.2322 1.9874 7.1908 22 6 2.5378 2.8512 8.3873 23 6 2.4084 2.4878 5.9151 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5816 1.6878 -2.0284 30 1 2.0954 3.1411 -1.1384 31 1 3.6754 3.5180 -4.4430 32 1 2.6213 0.4186 2.5301 33 1 0.9433 1.0124 2.5299 34 1 1.4503 -0.2264 4.1418 35 1 1.1398 -1.1103 6.4178 36 1 1.6485 0.3022 8.3686 37 1 1.6425 3.4017 8.6762 38 1 2.8608 2.2220 9.2167 39 1 3.3311 3.5547 8.1345 40 1 2.7643 3.4979 5.7753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:28 Heat of formation + Delta-G solvation = -53.172145 kcal Electronic energy + Delta-G solvation = -21027.746966 eV Core-core repulsion = 17807.822908 eV Total energy + Delta-G solvation = -3219.924059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31382 -39.00910 -37.39527 -35.33726 -32.85419 -32.62446 -30.67053 -30.16621 -28.64158 -27.12190 -26.33614 -23.11504 -22.78867 -22.60718 -21.13772 -18.58151 -17.96898 -16.61254 -16.40004 -16.18774 -16.02237 -15.62207 -15.17536 -14.40078 -14.25341 -14.12751 -13.72239 -13.51463 -13.31616 -13.16741 -12.68567 -12.48061 -12.22400 -12.06664 -11.97326 -11.66657 -11.65742 -11.25283 -11.01914 -10.95515 -10.90938 -10.71212 -10.55336 -10.15369 -9.68470 -8.97239 -8.89390 -8.44851 -8.22371 -7.75837 -6.06117 -4.11185 1.21230 1.38039 2.92835 3.25870 3.31627 3.36173 3.40393 3.66272 4.04523 4.43738 4.67445 4.68317 4.90952 4.92307 5.06669 5.11951 5.17039 5.22138 5.28273 5.31015 5.40246 5.42089 5.54575 5.57665 5.68922 5.75384 5.94144 5.96775 6.15736 6.24585 6.32567 6.40772 6.47148 6.67928 6.98083 7.38298 7.40422 7.50183 7.89826 8.19992 8.29765 8.85034 8.99825 9.53892 11.02039 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.003679 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.548317 B = 7608.983040 C = 8196.640359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.517 6.517 15 C 0.042 3.958 16 O -0.287 6.287 17 C 0.140 3.860 18 C -0.219 4.219 19 C -0.076 4.076 20 C -0.166 4.166 21 C -0.049 4.049 22 C -0.114 4.114 23 C -0.154 4.154 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 -8.542 18.999 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.327 5.327 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.393 6.393 15 C -0.037 4.037 16 O -0.199 6.199 17 C 0.094 3.906 18 C -0.238 4.238 19 C -0.094 4.094 20 C -0.184 4.184 21 C -0.049 4.049 22 C -0.171 4.171 23 C -0.172 4.172 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.897 -7.606 18.723 21.052 hybrid contribution 0.830 -0.570 -0.526 1.136 sum -5.067 -8.175 18.197 20.583 Atomic orbital electron populations 1.22242 0.96584 1.01611 1.02502 1.21485 0.93679 0.84070 1.02894 1.48205 1.63985 1.13338 1.07178 1.19314 0.96422 0.93710 0.77572 1.21395 0.96886 1.32180 1.06402 0.92452 1.24931 0.97919 0.94828 0.96346 1.69918 1.35787 1.33230 1.14379 0.86545 0.84712 0.78248 0.77850 1.20226 1.21138 1.20127 1.19707 0.79684 0.87151 0.84284 1.90720 1.44278 1.17558 1.86697 1.22721 1.01625 0.93394 0.85966 1.86203 1.81933 1.40401 1.11337 1.19125 0.94418 0.92278 0.84811 1.21280 1.08069 0.95661 0.98743 1.20893 0.97392 0.99344 0.91812 1.20892 1.04502 0.94250 0.98763 1.19691 0.96726 0.94541 0.93975 1.20807 1.02117 0.99031 0.95134 1.20335 1.06375 1.00799 0.89711 0.91745 0.91945 0.93135 0.89454 0.91941 0.94674 0.93749 0.92600 0.89591 0.89661 0.85452 0.85871 0.86145 0.90931 0.91402 0.91246 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.41 2.46 -175.05 -0.43 -12.84 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.88 7.75 -10.99 -0.09 10.79 16 14 O -0.52 -13.77 16.08 -14.35 -0.23 -14.00 16 15 C 0.04 0.66 3.77 36.01 0.14 0.80 16 16 O -0.29 -5.07 9.67 -39.33 -0.38 -5.45 16 17 C 0.14 2.04 6.69 -39.22 -0.26 1.78 16 18 C -0.22 -2.63 9.04 -39.44 -0.36 -2.98 16 19 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 20 C -0.17 -1.66 9.70 -39.56 -0.38 -2.04 16 21 C -0.05 -0.54 5.88 -104.64 -0.62 -1.15 16 22 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 23 C -0.15 -2.04 9.64 -39.44 -0.38 -2.42 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 27 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.09 1.16 6.92 -51.93 -0.36 0.81 16 33 H 0.09 1.10 6.71 -51.93 -0.35 0.76 16 34 H 0.13 1.30 6.30 -52.48 -0.33 0.97 16 35 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 39 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 40 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -34.25 339.07 -8.18 -42.44 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.89 Total: -1.89 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.07 Total: -4.42 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.31 Total: -38.67 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.61 Total: -19.45 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.25 -8.18 -42.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.735 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds