Wall clock time and date at job start Mon Mar 30 2020 01:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46883 * 2 1 4 4 C 1.46504 * 119.99888 * 269.99740 * 3 2 1 5 5 C 1.50696 * 109.47455 * 270.00102 * 4 3 2 6 6 H 1.07999 * 120.00088 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99876 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47298 * 59.99867 * 9 7 5 11 11 H 1.48499 * 109.46881 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46986 * 300.00120 * 9 7 5 13 13 C 1.34777 * 119.99851 * 90.00589 * 3 2 1 14 14 O 1.21279 * 119.99740 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99843 * 359.97438 * 13 3 2 16 16 O 1.42903 * 109.46938 * 180.02562 * 15 13 3 17 17 C 1.35900 * 117.00220 * 180.02562 * 16 15 13 18 18 C 1.38749 * 120.05349 * 0.02562 * 17 16 15 19 19 C 1.38119 * 119.94390 * 179.97438 * 18 17 16 20 20 C 1.38285 * 120.05600 * 359.74265 * 19 18 17 21 21 C 1.38242 * 120.10971 * 0.51459 * 20 19 18 22 22 C 1.50706 * 119.97255 * 179.76825 * 21 20 19 23 23 C 1.38164 * 120.05477 * 359.48677 * 21 20 19 24 24 H 1.08993 * 109.47389 * 60.00344 * 1 2 3 25 25 H 1.09001 * 109.47043 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47207 * 299.99711 * 1 2 3 27 27 H 1.09005 * 109.47383 * 240.00069 * 2 1 3 28 28 H 1.09005 * 109.47532 * 120.00005 * 2 1 3 29 29 H 1.09002 * 109.46922 * 30.00742 * 4 3 2 30 30 H 1.09001 * 109.46417 * 150.00011 * 4 3 2 31 31 H 0.97001 * 120.00160 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47087 * 60.00565 * 15 13 3 33 33 H 1.08997 * 109.47599 * 300.00347 * 15 13 3 34 34 H 1.08004 * 120.02880 * 359.95538 * 18 17 16 35 35 H 1.08003 * 119.97250 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.94810 * 180.27303 * 20 19 18 37 37 H 1.09001 * 109.46953 * 269.71760 * 22 21 20 38 38 H 1.09000 * 109.47318 * 29.71358 * 22 21 20 39 39 H 1.09000 * 109.47161 * 149.71989 * 22 21 20 40 40 H 1.08002 * 120.02382 * 180.23677 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2304 -1.0963 7 6 4.1492 2.3907 -2.8775 8 7 3.3494 3.1275 -3.6171 9 14 5.9132 2.0966 -3.4172 10 1 6.1401 0.6399 -3.5955 11 1 6.1610 2.7978 -4.7025 12 1 6.8411 2.6189 -2.3820 13 6 2.2430 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3005 2.1819 3.5585 17 6 2.1275 1.6921 4.8143 18 6 1.6700 0.3951 4.9974 19 6 1.4955 -0.1006 6.2747 20 6 1.7814 0.6930 7.3706 21 6 2.2322 1.9874 7.1908 22 6 2.5378 2.8512 8.3873 23 6 2.4084 2.4878 5.9151 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5816 1.6878 -2.0284 30 1 2.0954 3.1411 -1.1384 31 1 3.6754 3.5180 -4.4430 32 1 2.6213 0.4186 2.5301 33 1 0.9433 1.0124 2.5299 34 1 1.4503 -0.2264 4.1418 35 1 1.1398 -1.1103 6.4178 36 1 1.6485 0.3022 8.3686 37 1 1.6425 3.4017 8.6762 38 1 2.8608 2.2220 9.2167 39 1 3.3311 3.5547 8.1345 40 1 2.7643 3.4979 5.7753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:27 Heat of formation + Delta-G solvation = -73.786060 kcal Electronic energy + Delta-G solvation = -21028.640853 eV Core-core repulsion = 17807.822908 eV Total energy + Delta-G solvation = -3220.817945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47702 -40.43992 -38.49360 -37.02755 -34.95483 -33.39693 -31.90176 -31.49180 -30.06283 -28.31654 -27.66136 -24.92840 -24.18371 -23.48190 -22.15822 -20.11450 -19.09456 -18.63057 -17.85336 -17.41293 -17.31591 -16.82642 -16.63039 -16.05018 -15.60869 -15.10992 -14.84041 -14.63740 -14.53483 -14.23681 -14.17672 -13.69917 -13.58918 -13.31029 -13.16597 -13.00494 -12.91496 -12.66256 -12.53469 -12.41871 -12.20620 -12.04076 -11.81916 -11.79680 -11.74882 -10.69999 -10.66234 -9.73411 -9.54831 -9.16163 -8.24892 -6.39893 0.37535 0.49138 1.35260 1.40254 1.46876 1.62013 1.66658 2.36005 2.67483 2.80973 3.05066 3.45813 3.79932 3.95363 3.96773 4.01605 4.16165 4.21989 4.37242 4.39218 4.45720 4.55844 4.60531 4.84105 4.86866 4.91185 4.95469 5.00993 5.02537 5.17908 5.25751 5.37607 5.38101 5.50330 5.52902 5.66062 5.77929 5.88390 6.02522 6.39142 6.63544 6.70055 7.21934 7.36550 8.82449 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.003679 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.548317 B = 7608.983040 C = 8196.640359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.548 4.548 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.495 3.505 14 O -0.586 6.586 15 C 0.058 3.942 16 O -0.326 6.326 17 C 0.107 3.893 18 C -0.222 4.222 19 C -0.074 4.074 20 C -0.163 4.163 21 C -0.053 4.053 22 C -0.114 4.114 23 C -0.181 4.181 24 H 0.040 0.960 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.030 0.970 30 H -0.005 1.005 31 H 0.268 0.732 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 -11.884 21.178 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.586 4.586 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.181 1.181 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.283 3.717 14 O -0.467 6.467 15 C -0.020 4.020 16 O -0.240 6.240 17 C 0.062 3.938 18 C -0.241 4.241 19 C -0.092 4.092 20 C -0.181 4.181 21 C -0.053 4.053 22 C -0.170 4.170 23 C -0.199 4.199 24 H 0.059 0.941 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.048 0.952 30 H 0.013 0.987 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.132 -11.014 20.921 24.426 hybrid contribution 0.837 0.459 -1.102 1.458 sum -5.295 -10.555 19.819 23.070 Atomic orbital electron populations 1.22187 0.94273 1.03897 1.01809 1.21897 0.95569 0.80780 1.04570 1.48212 1.63625 1.15380 1.05535 1.18756 0.95577 0.91498 0.79969 1.21695 0.97879 1.32342 1.06693 0.92708 1.25872 1.02499 0.94363 0.96389 1.70042 1.37891 1.33987 1.14826 0.85460 0.78810 0.79192 0.77309 1.18133 1.20252 1.20556 1.20773 0.78129 0.86626 0.86205 1.90676 1.47388 1.20715 1.87890 1.22608 1.04224 0.92610 0.82568 1.86136 1.83112 1.41939 1.12801 1.19416 0.96811 0.93988 0.83546 1.21540 1.07492 0.94538 1.00480 1.21338 0.96125 1.00770 0.90956 1.21337 1.02794 0.93551 1.00383 1.20043 0.96032 0.95578 0.93683 1.20873 1.02539 0.99062 0.94556 1.20516 1.07820 1.00642 0.90969 0.94124 0.88042 0.92224 0.90199 0.87827 0.95224 0.98725 0.92318 0.86575 0.86125 0.83469 0.82491 0.83095 0.89939 0.89337 0.91584 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 10.24 71.98 0.74 -3.02 16 2 C 0.09 2.69 5.93 86.38 0.51 3.20 16 3 N -0.60 -25.38 2.46 -826.13 -2.03 -27.41 16 4 C 0.26 14.40 5.16 85.63 0.44 14.84 16 5 C -0.55 -32.02 9.39 25.60 0.24 -31.78 16 6 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.01 0.46 5.46 84.66 0.46 0.93 16 8 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 9 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 C 0.50 21.83 7.75 87.66 0.68 22.51 16 14 O -0.59 -33.30 16.08 16.01 0.26 -33.04 16 15 C 0.06 1.76 3.77 71.24 0.27 2.03 16 16 O -0.33 -11.75 9.67 -73.39 -0.71 -12.46 16 17 C 0.11 3.08 6.69 22.50 0.15 3.24 16 18 C -0.22 -4.69 9.04 22.36 0.20 -4.49 16 19 C -0.07 -1.22 10.04 22.25 0.22 -0.99 16 20 C -0.16 -2.68 9.70 22.28 0.22 -2.46 16 21 C -0.05 -1.07 5.88 -19.88 -0.12 -1.19 16 22 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 23 C -0.18 -4.88 9.64 22.36 0.22 -4.66 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 27 H 0.08 2.43 8.07 -2.38 -0.02 2.41 16 28 H 0.10 2.14 6.44 -2.38 -0.02 2.12 16 29 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 30 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.12 2.80 6.92 -2.39 -0.02 2.79 16 33 H 0.12 2.78 6.71 -2.39 -0.02 2.76 16 34 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 35 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 0.86 8.08 -2.39 -0.02 0.85 16 39 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 40 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -81.01 339.07 5.80 -75.22 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.02 Total: 9.54 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.95 Total: -2.72 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -1.74 Total: -83.95 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.45 Total: -45.50 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -81.01 5.80 -75.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.429 kcal (2) G-P(sol) polarization free energy of solvation -81.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds