Wall clock time and date at job start Mon Mar 30 2020 01:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46738 * 2 1 4 4 C 1.37098 * 120.00054 * 82.08160 * 3 2 1 5 5 H 1.08000 * 120.00075 * 315.80397 * 4 3 2 6 6 C 1.38950 * 120.00232 * 136.08059 * 4 3 2 7 7 N 1.31414 * 120.00352 * 176.65171 * 6 4 3 8 8 Si 1.86808 * 119.99963 * 356.65473 * 6 4 3 9 9 H 1.48503 * 109.46770 * 96.41239 * 8 6 4 10 10 H 1.48501 * 109.46996 * 216.40933 * 8 6 4 11 11 H 1.48500 * 109.46860 * 336.41053 * 8 6 4 12 12 C 1.34781 * 120.00048 * 262.07112 * 3 2 1 13 13 O 1.21286 * 119.99874 * 177.42705 * 12 3 2 14 14 C 1.50694 * 119.99735 * 357.42850 * 12 3 2 15 15 C 1.52994 * 109.47431 * 289.94959 * 14 12 3 16 16 O 1.42900 * 109.47261 * 49.95266 * 14 12 3 17 17 C 1.42903 * 113.99949 * 58.23866 * 16 14 12 18 18 C 1.50701 * 109.46986 * 169.94851 * 14 12 3 19 19 C 1.38232 * 119.99755 * 45.60935 * 18 14 12 20 20 C 1.38239 * 120.00112 * 179.78431 * 19 18 14 21 21 C 1.38240 * 119.99769 * 0.44281 * 20 19 18 22 22 C 1.38244 * 119.99832 * 359.81168 * 21 20 19 23 23 C 1.38229 * 119.99890 * 359.97438 * 22 21 20 24 24 H 1.08993 * 109.47514 * 64.96146 * 1 2 3 25 25 H 1.09000 * 109.47110 * 184.96053 * 1 2 3 26 26 H 1.09000 * 109.47270 * 304.95660 * 1 2 3 27 27 H 1.08993 * 109.46971 * 239.99904 * 2 1 3 28 28 H 1.09001 * 109.46709 * 119.99778 * 2 1 3 29 29 H 0.96994 * 120.00032 * 179.97438 * 7 6 4 30 30 H 1.09011 * 109.47282 * 63.89526 * 15 14 12 31 31 H 1.08998 * 109.47336 * 183.89315 * 15 14 12 32 32 H 1.09000 * 109.47313 * 303.89330 * 15 14 12 33 33 H 1.08992 * 109.47337 * 305.40632 * 17 16 14 34 34 H 1.08999 * 109.46807 * 65.41129 * 17 16 14 35 35 H 1.09001 * 109.46798 * 185.41079 * 17 16 14 36 36 H 1.07995 * 120.00470 * 359.97438 * 19 18 14 37 37 H 1.07999 * 120.00501 * 180.26932 * 20 19 18 38 38 H 1.07999 * 120.00174 * 179.83144 * 21 20 19 39 39 H 1.07990 * 119.99843 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.00034 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.0925 2.0820 1.1760 5 1 1.2757 2.0411 1.8815 6 6 3.2160 2.8495 1.4577 7 7 3.2596 3.5731 2.5538 8 14 4.6646 2.8527 0.2782 9 1 4.5636 4.0260 -0.6266 10 1 5.9310 2.9304 1.0499 11 1 4.6508 1.6045 -0.5262 12 6 2.3946 1.9629 -1.1561 13 8 2.7546 3.1211 -1.1631 14 6 2.3682 1.1743 -2.4399 15 6 3.4740 0.1173 -2.4121 16 8 1.0991 0.5323 -2.5786 17 6 -0.0110 1.4323 -2.5755 18 6 2.5909 2.1037 -3.6051 19 6 3.5962 3.0509 -3.5512 20 6 3.8034 3.9006 -4.6218 21 6 2.9993 3.8091 -5.7425 22 6 1.9905 2.8653 -5.7942 23 6 1.7862 2.0128 -4.7254 24 1 -0.3634 0.4349 -0.9310 25 1 -0.3633 -1.0238 0.0889 26 1 -0.3634 0.5888 0.8422 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0440 4.1086 2.7506 30 1 3.2752 -0.5956 -1.6118 31 1 3.4998 -0.4068 -3.3674 32 1 4.4349 0.6013 -2.2372 33 1 0.0245 2.0500 -1.6782 34 1 0.0362 2.0703 -3.4580 35 1 -0.9403 0.8628 -2.5880 36 1 4.2218 3.1252 -2.6741 37 1 4.5917 4.6378 -4.5815 38 1 3.1594 4.4747 -6.5778 39 1 1.3626 2.7935 -6.6698 40 1 0.9983 1.2751 -4.7660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106635824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:15 Heat of formation + Delta-G solvation = -10.664671 kcal Electronic energy + Delta-G solvation = -23677.998342 eV Core-core repulsion = 20459.917546 eV Total energy + Delta-G solvation = -3218.080796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70211 -38.38210 -37.00843 -35.10008 -32.64244 -32.12279 -30.58444 -29.85682 -29.34151 -26.18285 -25.35151 -23.88106 -22.48524 -22.19637 -20.93073 -19.39169 -17.52922 -17.17185 -16.26601 -15.65370 -15.53036 -15.14228 -14.74092 -14.34116 -14.14092 -13.62985 -13.29213 -13.18881 -12.97012 -12.83763 -12.33768 -12.27047 -12.19597 -12.14113 -11.86395 -11.69963 -11.54033 -10.80975 -10.77603 -10.70808 -10.55893 -10.28714 -10.01164 -9.71847 -9.54222 -8.69993 -8.56480 -8.43942 -8.17018 -7.63541 -6.18284 -4.07427 1.59388 1.73352 3.09731 3.41433 3.62508 3.82807 3.93662 4.11821 4.42697 4.59742 4.87942 5.13355 5.18619 5.25204 5.33767 5.43131 5.46856 5.62071 5.65318 5.72053 5.79737 5.88170 5.92398 5.97010 6.03230 6.07691 6.17049 6.23017 6.30147 6.35964 6.48383 6.59100 6.70249 6.82388 6.84337 6.88553 7.28638 7.32352 7.79819 7.93363 8.69432 8.79615 9.35111 9.68647 10.82393 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.009627 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.061406 B = 2907.744209 C = 3870.717555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 N -0.441 5.441 4 C -0.340 4.340 5 H 0.096 0.904 6 C 0.071 3.929 7 N -0.874 5.874 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.330 1.330 11 H -0.289 1.289 12 C 0.424 3.576 13 O -0.541 6.541 14 C 0.145 3.855 15 C -0.142 4.142 16 O -0.364 6.364 17 C 0.013 3.987 18 C -0.097 4.097 19 C -0.069 4.069 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.136 4.136 23 C -0.107 4.107 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.273 0.727 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 -6.357 -13.879 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.031 4.031 3 N -0.160 5.160 4 C -0.466 4.466 5 H 0.114 0.886 6 C -0.137 4.137 7 N -0.509 5.509 8 Si 0.800 3.200 9 H -0.194 1.194 10 H -0.263 1.263 11 H -0.217 1.217 12 C 0.214 3.786 13 O -0.428 6.428 14 C 0.102 3.898 15 C -0.198 4.198 16 O -0.283 6.283 17 C -0.082 4.082 18 C -0.098 4.098 19 C -0.087 4.087 20 C -0.149 4.149 21 C -0.139 4.139 22 C -0.154 4.154 23 C -0.125 4.125 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.205 -5.898 -13.713 15.090 hybrid contribution 0.533 0.424 -0.266 0.732 sum -1.672 -5.474 -13.980 15.106 Atomic orbital electron populations 1.22445 0.96906 1.00916 1.03077 1.21878 0.94622 0.84622 1.02019 1.43753 1.55818 1.10648 1.05740 1.18935 1.04452 1.28268 0.94992 0.88640 1.25571 0.98662 0.93696 0.95727 1.69685 1.30086 1.26036 1.25079 0.85307 0.76821 0.79250 0.78587 1.19425 1.26335 1.21706 1.20613 0.85097 0.87859 0.85028 1.90250 1.50814 1.17360 1.84422 1.20448 0.85674 0.92154 0.91496 1.22039 0.96650 0.97951 1.03205 1.87925 1.13265 1.33130 1.93961 1.23037 0.88715 0.94770 1.01719 1.19966 0.97141 0.97736 0.94933 1.21321 0.97114 0.92958 0.97347 1.21141 1.00198 0.99812 0.93797 1.21088 0.96075 0.98644 0.98052 1.20981 0.98946 0.96993 0.98484 1.21017 0.99151 0.99448 0.92920 0.91190 0.93075 0.92716 0.89973 0.91598 0.91773 0.90314 0.91238 0.90438 0.92435 0.93209 0.89491 0.85053 0.86386 0.86626 0.86480 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 9.69 37.16 0.36 -2.57 16 2 C 0.09 1.75 5.30 -4.05 -0.02 1.73 16 3 N -0.44 -10.46 2.27 -114.82 -0.26 -10.72 16 4 C -0.34 -9.56 9.75 -14.93 -0.15 -9.71 16 5 H 0.10 2.83 8.06 -52.49 -0.42 2.41 16 6 C 0.07 2.10 5.24 -17.47 -0.09 2.00 16 7 N -0.87 -26.76 13.96 55.50 0.77 -25.98 16 8 Si 0.96 25.54 23.09 -169.99 -3.92 21.62 16 9 H -0.27 -7.36 6.21 56.52 0.35 -7.01 16 10 H -0.33 -8.77 7.11 56.52 0.40 -8.37 16 11 H -0.29 -7.12 4.61 56.52 0.26 -6.86 16 12 C 0.42 9.88 2.53 -10.99 -0.03 9.86 16 13 O -0.54 -14.44 8.48 5.55 0.05 -14.40 16 14 C 0.15 2.73 0.53 -92.93 -0.05 2.68 16 15 C -0.14 -2.37 8.15 37.15 0.30 -2.07 16 16 O -0.36 -6.07 6.81 -35.23 -0.24 -6.31 16 17 C 0.01 0.21 7.52 101.05 0.76 0.97 16 18 C -0.10 -1.77 4.26 -104.62 -0.45 -2.21 16 19 C -0.07 -1.34 8.16 -39.58 -0.32 -1.66 16 20 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 21 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 22 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 23 C -0.11 -1.66 7.56 -39.58 -0.30 -1.96 16 24 H 0.07 1.12 3.03 -51.93 -0.16 0.96 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 27 H 0.08 1.42 3.46 -51.93 -0.18 1.24 16 28 H 0.07 1.24 8.10 -51.93 -0.42 0.81 16 29 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 30 H 0.08 1.26 5.61 -51.92 -0.29 0.97 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.38 6.82 -51.93 -0.35 1.02 16 33 H 0.06 1.08 6.22 -51.93 -0.32 0.76 16 34 H 0.05 0.75 5.23 -51.93 -0.27 0.48 16 35 H 0.09 1.08 7.52 -51.93 -0.39 0.69 16 36 H 0.13 2.86 5.34 -52.49 -0.28 2.58 16 37 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.13 1.77 6.10 -52.48 -0.32 1.45 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -32.51 293.76 -5.62 -38.14 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.27 Total: 3.05 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.17 Total: -9.82 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.51 Total: -36.70 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.19 Total: -20.70 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -3.92 Total: 21.62 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.51 -5.62 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106635824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.473 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds