Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47035 * 2 1 4 4 C 1.34225 * 117.00098 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00228 * 0.02562 * 4 3 2 6 6 C 1.50709 * 120.00164 * 180.02562 * 4 3 2 7 7 N 1.46496 * 109.47024 * 179.97438 * 6 4 3 8 8 C 1.36933 * 120.00283 * 263.88468 * 7 6 4 9 9 H 1.08007 * 120.00416 * 143.18824 * 8 7 6 10 10 C 1.38814 * 119.99903 * 323.18756 * 8 7 6 11 11 N 1.31616 * 120.00007 * 340.41713 * 10 8 7 12 12 Si 1.86802 * 119.99881 * 160.41563 * 10 8 7 13 13 H 1.48500 * 109.47031 * 90.00390 * 12 10 8 14 14 H 1.48500 * 109.46844 * 209.99924 * 12 10 8 15 15 H 1.48492 * 109.47258 * 330.00073 * 12 10 8 16 16 C 1.46505 * 119.99813 * 83.88553 * 7 6 4 17 17 H 1.08996 * 109.47045 * 352.53926 * 16 7 6 18 18 C 1.53000 * 109.47142 * 232.54098 * 16 7 6 19 19 C 1.50699 * 109.47191 * 112.54431 * 16 7 6 20 20 C 1.38239 * 119.99974 * 230.13253 * 19 16 7 21 21 C 1.38229 * 120.00285 * 179.97438 * 20 19 16 22 22 C 1.38236 * 119.99791 * 359.96864 * 21 20 19 23 23 C 1.38239 * 119.99923 * 0.03136 * 22 21 20 24 24 C 1.38224 * 119.99981 * 359.97034 * 23 22 21 25 25 H 1.09001 * 109.47101 * 299.99436 * 1 2 3 26 26 H 1.09000 * 109.47204 * 59.99877 * 1 2 3 27 27 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47101 * 240.00564 * 2 1 3 29 29 H 1.08992 * 109.47514 * 120.00233 * 2 1 3 30 30 H 1.08998 * 109.47229 * 60.00051 * 6 4 3 31 31 H 1.08997 * 109.46723 * 299.99878 * 6 4 3 32 32 H 0.96995 * 119.99843 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.47522 * 59.99798 * 18 16 7 34 34 H 1.09000 * 109.47195 * 179.97438 * 18 16 7 35 35 H 1.09005 * 109.47448 * 300.00243 * 18 16 7 36 36 H 1.08001 * 119.99727 * 359.97438 * 20 19 16 37 37 H 1.08000 * 120.00260 * 179.69681 * 21 20 19 38 38 H 1.08000 * 119.99881 * 179.97438 * 22 21 20 39 39 H 1.08005 * 119.99547 * 180.02562 * 23 22 21 40 40 H 1.08008 * 119.99770 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 7 5.3836 2.8608 -0.0001 8 6 6.0741 2.9506 1.1790 9 1 6.9628 2.3559 1.3311 10 6 5.6319 3.8061 2.1788 11 7 4.8128 4.7936 1.8853 12 14 6.1995 3.5556 3.9408 13 1 7.4457 4.3289 4.1740 14 1 5.1433 4.0262 4.8726 15 1 6.4606 2.1130 4.1764 16 6 6.1080 2.6880 -1.2618 17 1 5.3965 2.5049 -2.0670 18 6 7.0617 1.4976 -1.1434 19 6 6.8973 3.9360 -1.5629 20 6 6.8016 4.5310 -2.8070 21 6 7.5251 5.6760 -3.0830 22 6 8.3439 6.2264 -2.1148 23 6 8.4396 5.6314 -0.8707 24 6 7.7161 4.4864 -0.5947 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.5852 3.4691 0.8905 31 1 3.5843 3.4701 -0.8895 32 1 4.5035 5.3910 2.5840 33 1 6.4910 0.5949 -0.9256 34 1 7.6003 1.3687 -2.0823 35 1 7.7732 1.6806 -0.3381 36 1 6.1614 4.1013 -3.5633 37 1 7.4541 6.1381 -4.0566 38 1 8.9096 7.1208 -2.3306 39 1 9.0791 6.0617 -0.1141 40 1 7.7906 4.0217 0.3775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119100681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = -43.229679 kcal Electronic energy + Delta-G solvation = -22133.461498 eV Core-core repulsion = 18913.968577 eV Total energy + Delta-G solvation = -3219.492921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.51334 -38.63593 -36.31909 -35.24136 -32.52716 -31.43736 -30.40484 -30.10679 -28.37670 -26.81133 -24.33790 -22.83573 -21.98959 -21.64975 -20.24974 -19.50707 -16.92219 -16.79092 -16.02804 -15.84807 -15.30004 -14.84141 -14.61196 -14.25030 -13.81029 -13.32657 -13.27217 -12.94742 -12.62197 -12.52680 -12.44393 -12.18651 -11.74594 -11.44591 -11.37182 -11.23672 -11.12335 -10.92748 -10.86194 -10.61799 -10.41151 -10.17698 -9.98369 -9.95370 -9.68206 -9.42920 -8.64030 -8.11531 -7.86295 -6.80678 -5.99899 -3.52705 2.14311 2.24844 3.24009 3.28589 3.36324 3.41348 3.49991 4.35390 4.61300 5.15831 5.17309 5.25456 5.26922 5.49072 5.57840 5.59227 5.64688 5.70831 5.94641 5.98470 6.06548 6.08145 6.21251 6.22755 6.36558 6.44922 6.48050 6.52750 6.72847 6.87406 6.91519 7.09785 7.14086 7.21661 7.29507 7.38735 7.60756 7.69996 7.86669 8.31340 8.72948 9.01247 9.57572 10.14523 11.02686 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.006866 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.280082 B = 4077.066781 C = 5293.570247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.374 6.374 4 C 0.424 3.576 5 O -0.511 6.511 6 C 0.156 3.844 7 N -0.546 5.546 8 C -0.254 4.254 9 H 0.069 0.931 10 C 0.015 3.985 11 N -0.879 5.879 12 Si 0.896 3.104 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.206 3.794 17 H 0.054 0.946 18 C -0.149 4.149 19 C -0.073 4.073 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.072 4.072 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.137 0.863 31 H 0.069 0.931 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -2.436 -6.069 6.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.291 6.291 4 C 0.264 3.736 5 O -0.397 6.397 6 C 0.026 3.974 7 N -0.263 5.263 8 C -0.383 4.383 9 H 0.086 0.914 10 C -0.186 4.186 11 N -0.520 5.520 12 Si 0.725 3.275 13 H -0.209 1.209 14 H -0.213 1.213 15 H -0.201 1.201 16 C 0.100 3.900 17 H 0.072 0.928 18 C -0.208 4.208 19 C -0.075 4.075 20 C -0.146 4.146 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.090 4.090 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.685 -2.622 -5.953 6.719 hybrid contribution 0.126 -0.177 0.981 1.005 sum -1.559 -2.800 -4.972 5.915 Atomic orbital electron populations 1.21768 0.93660 1.02062 1.03163 1.22770 0.94582 0.82710 1.01601 1.86652 1.27188 1.30397 1.84903 1.27138 0.78977 0.96321 0.71137 1.90513 1.60176 1.43544 1.45502 1.20808 0.84641 0.86600 1.05392 1.43535 0.98835 1.81898 1.02049 1.18943 1.10216 1.17951 0.91209 0.91395 1.25229 0.99480 0.94475 0.99438 1.69914 1.35334 1.14394 1.32371 0.86401 0.78212 0.78355 0.84573 1.20875 1.21271 1.20118 1.19406 0.92036 0.90070 0.88515 0.92774 1.22079 0.99734 0.98924 1.00024 1.20611 0.95931 0.98266 0.92695 1.20956 1.00306 0.96507 0.96796 1.20850 0.98949 0.97090 0.98702 1.20921 1.00350 0.99884 0.94473 1.21140 1.00603 0.97055 0.96273 1.21575 0.92971 0.94651 0.99805 0.91734 0.91843 0.91141 0.92286 0.92141 0.84648 0.91284 0.93014 0.92044 0.94316 0.92364 0.87422 0.87517 0.87624 0.87332 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.29 37.16 0.38 -1.35 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -7.18 10.22 -39.24 -0.40 -7.59 16 4 C 0.42 9.23 8.01 36.01 0.29 9.52 16 5 O -0.51 -12.13 15.55 -18.75 -0.29 -12.42 16 6 C 0.16 3.52 5.73 -5.19 -0.03 3.49 16 7 N -0.55 -12.78 1.86 -168.34 -0.31 -13.09 16 8 C -0.25 -6.37 5.92 -15.06 -0.09 -6.46 16 9 H 0.07 1.73 6.40 -52.48 -0.34 1.40 16 10 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 11 N -0.88 -23.18 11.39 55.49 0.63 -22.55 16 12 Si 0.90 20.57 29.60 -169.99 -5.03 15.54 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.21 4.29 3.01 -69.08 -0.21 4.08 16 17 H 0.05 1.08 7.70 -51.93 -0.40 0.68 16 18 C -0.15 -2.92 8.91 37.16 0.33 -2.59 16 19 C -0.07 -1.48 4.95 -104.62 -0.52 -2.00 16 20 C -0.13 -2.30 9.67 -39.58 -0.38 -2.68 16 21 C -0.14 -2.31 10.05 -39.59 -0.40 -2.70 16 22 C -0.14 -2.34 10.05 -39.58 -0.40 -2.74 16 23 C -0.13 -2.49 10.05 -39.59 -0.40 -2.88 16 24 C -0.07 -1.51 8.70 -39.59 -0.34 -1.85 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.14 3.37 5.47 -51.93 -0.28 3.09 16 31 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.06 1.28 7.55 -51.93 -0.39 0.89 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.18 6.62 -51.93 -0.34 0.83 16 36 H 0.11 1.72 7.97 -52.49 -0.42 1.30 16 37 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 40 H 0.15 3.31 5.41 -52.48 -0.28 3.02 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -28.09 332.96 -7.82 -35.91 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.82 Total: 5.92 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.62 Total: -6.74 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.32 Total: -35.64 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.69 Total: -20.01 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.09 -7.82 -35.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119100681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.317 kcal (2) G-P(sol) polarization free energy of solvation -28.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds