Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00129 * 2 1 4 4 C 1.53001 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47249 * 174.99777 * 4 3 2 6 6 N 1.46498 * 109.47116 * 294.99666 * 4 3 2 7 7 C 1.39776 * 120.00322 * 267.40779 * 6 4 3 8 8 C 1.38945 * 120.00631 * 6.54252 * 7 6 4 9 9 C 1.38014 * 119.99574 * 179.71960 * 8 7 6 10 10 C 1.38898 * 120.00046 * 0.55110 * 9 8 7 11 11 O 1.35806 * 119.99096 * 179.70100 * 10 9 8 12 12 C 1.34806 * 116.99916 * 177.56777 * 11 10 9 13 13 H 1.07999 * 120.00382 * 5.24027 * 12 11 10 14 14 C 1.38617 * 120.00042 * 185.24023 * 12 11 10 15 15 N 1.31584 * 120.00050 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00035 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47457 * 89.99731 * 16 14 12 18 18 H 1.48500 * 109.47141 * 209.99913 * 16 14 12 19 19 H 1.48507 * 109.46949 * 329.99663 * 16 14 12 20 20 C 1.38891 * 120.01535 * 359.72483 * 10 9 8 21 21 C 1.38007 * 120.00778 * 359.97438 * 20 10 9 22 22 C 1.52999 * 109.47061 * 55.00102 * 4 3 2 23 23 C 1.52996 * 117.49729 * 242.91209 * 22 4 3 24 24 C 1.53009 * 117.49715 * 174.25314 * 22 4 3 25 25 H 1.08998 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47099 * 300.00565 * 1 2 3 27 27 H 1.09007 * 109.47089 * 59.99703 * 1 2 3 28 28 H 1.09003 * 109.47330 * 300.00222 * 3 2 1 29 29 H 1.08997 * 109.47430 * 59.99876 * 3 2 1 30 30 H 0.97006 * 119.99715 * 87.41178 * 6 4 3 31 31 H 1.07998 * 120.00251 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.99886 * 180.25442 * 9 8 7 33 33 H 0.97001 * 119.99818 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.99676 * 179.97438 * 20 10 9 35 35 H 1.08000 * 120.00495 * 179.97438 * 21 20 10 36 36 H 1.08994 * 115.55078 * 28.58501 * 22 4 3 37 37 H 1.09007 * 117.49944 * 359.97438 * 23 22 4 38 38 H 1.08996 * 117.50153 * 145.02257 * 23 22 4 39 39 H 1.09004 * 117.49518 * 214.97571 * 24 22 4 40 40 H 1.09000 * 117.49841 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0903 6 7 3.9767 0.5640 1.2509 7 6 4.3260 1.3639 2.3426 8 6 4.1266 2.7380 2.2892 9 6 4.4663 3.5270 3.3695 10 6 5.0179 2.9488 4.5055 11 8 5.3577 3.7261 5.5661 12 6 5.8412 3.0970 6.6559 13 1 6.0228 2.0328 6.6290 14 6 6.1051 3.8162 7.8112 15 7 6.5766 3.2021 8.8752 16 14 5.7903 5.6568 7.8581 17 1 4.4003 5.9098 8.3151 18 1 6.7448 6.2985 8.7974 19 1 5.9756 6.2255 6.4987 20 6 5.2226 1.5760 4.5570 21 6 4.8775 0.7859 3.4795 22 6 3.9780 0.3198 -1.1826 23 6 4.6947 -0.9946 -0.8670 24 6 5.4809 0.1882 -1.4381 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 4.0265 -0.4022 1.3219 31 1 3.7021 3.1881 1.4040 32 1 4.3075 4.5945 3.3296 33 1 6.7617 3.7054 9.6835 34 1 5.6520 1.1269 5.4404 35 1 5.0371 -0.2815 3.5194 36 1 3.3196 0.3381 -2.0510 37 1 4.8513 -1.2430 0.1828 38 1 4.5081 -1.8409 -1.5279 39 1 5.8110 0.1195 -2.4746 40 1 6.1542 0.7181 -0.7643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126031756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = -6.348107 kcal Electronic energy + Delta-G solvation = -21146.261599 eV Core-core repulsion = 17928.367983 eV Total energy + Delta-G solvation = -3217.893616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.60132 -38.64953 -37.25208 -36.57392 -33.66505 -32.18882 -30.56800 -29.74542 -27.28481 -26.39344 -24.87025 -23.49962 -22.61174 -22.15378 -20.94744 -19.64248 -17.67120 -17.48442 -16.84983 -16.42794 -16.01855 -15.78462 -15.11736 -14.61902 -14.46379 -13.96654 -13.74836 -13.67435 -13.05815 -12.81327 -12.70904 -12.45295 -12.23033 -12.09111 -11.77264 -11.69449 -11.45716 -11.36072 -11.14581 -10.84903 -10.63398 -10.36629 -10.14575 -10.03562 -9.74716 -9.26835 -9.19573 -8.53239 -8.23770 -6.48031 -6.29524 -3.93875 2.12912 2.48386 3.28705 3.32207 3.47448 3.52761 3.76313 3.90997 4.33424 4.49300 4.60108 4.81867 4.89634 5.03142 5.04232 5.09930 5.20990 5.23179 5.29511 5.40206 5.47520 5.52777 5.55196 5.59132 5.63776 5.69612 5.84658 6.05478 6.07484 6.16352 6.19783 6.45473 6.79982 6.83775 7.02153 7.05632 7.36840 7.51111 7.81954 7.95827 8.13008 8.25151 9.07151 9.73411 10.79080 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027315 B = 0.003666 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.840281 B = 7635.946244 C = 7957.651794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.046 3.954 4 C 0.191 3.809 5 H 0.096 0.904 6 N -0.746 5.746 7 C 0.134 3.866 8 C -0.154 4.154 9 C -0.149 4.149 10 C 0.116 3.884 11 O -0.228 6.228 12 C -0.384 4.384 13 H 0.103 0.897 14 C 0.060 3.940 15 N -0.888 5.888 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.175 4.175 21 C -0.143 4.143 22 C -0.151 4.151 23 C -0.170 4.170 24 C -0.178 4.178 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.395 0.605 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.277 0.723 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 -5.327 -20.224 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.033 4.033 4 C 0.084 3.916 5 H 0.114 0.886 6 N -0.383 5.383 7 C 0.035 3.965 8 C -0.176 4.176 9 C -0.169 4.169 10 C 0.065 3.935 11 O -0.134 6.134 12 C -0.460 4.460 13 H 0.120 0.880 14 C -0.142 4.142 15 N -0.527 5.527 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.194 4.194 21 C -0.165 4.165 22 C -0.170 4.170 23 C -0.207 4.207 24 C -0.215 4.215 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.233 0.767 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.065 -5.088 -20.068 22.219 hybrid contribution -0.369 0.470 0.266 0.654 sum -8.435 -4.618 -19.802 22.014 Atomic orbital electron populations 1.22707 0.81757 1.02393 0.99700 1.87906 1.18926 1.27595 1.95312 1.23191 0.94891 0.85068 1.00131 1.20280 0.90749 0.96897 0.83703 0.88613 1.44481 1.76571 1.07226 1.09988 1.17482 1.00056 0.90481 0.88432 1.20179 1.07035 0.91774 0.98602 1.19994 1.05055 0.99337 0.92496 1.18965 0.96004 0.89789 0.88750 1.83577 1.73571 1.34768 1.21530 1.20704 1.41779 0.95538 0.88003 0.87952 1.24423 0.96134 0.99974 0.93686 1.69666 1.43780 1.36825 1.02466 0.86186 0.78195 0.83780 0.78724 1.20102 1.21013 1.18461 1.21114 1.05243 0.93464 0.99626 1.20290 1.04132 0.98697 0.93357 1.22458 0.94811 1.00075 0.99692 1.22855 1.04146 0.91793 1.01950 1.22987 0.94030 1.02811 1.01694 0.89956 0.94194 0.94529 0.93334 0.92628 0.76743 0.87112 0.86629 0.91325 0.84901 0.87404 0.87407 0.88471 0.89149 0.89116 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.35 10.14 -35.23 -0.36 -4.70 16 3 C 0.05 0.49 5.73 37.16 0.21 0.70 16 4 C 0.19 2.12 2.46 -67.93 -0.17 1.95 16 5 H 0.10 1.06 6.34 -51.93 -0.33 0.73 16 6 N -0.75 -9.88 4.74 -52.12 -0.25 -10.13 16 7 C 0.13 2.22 6.65 -83.71 -0.56 1.66 16 8 C -0.15 -2.60 9.15 -39.40 -0.36 -2.96 16 9 C -0.15 -2.96 9.98 -39.42 -0.39 -3.36 16 10 C 0.12 2.71 6.65 -39.10 -0.26 2.45 16 11 O -0.23 -6.14 8.58 -0.06 0.00 -6.14 16 12 C -0.38 -11.06 9.94 30.87 0.31 -10.76 16 13 H 0.10 3.01 5.42 -52.49 -0.28 2.72 16 14 C 0.06 1.71 5.49 -17.52 -0.10 1.61 16 15 N -0.89 -26.25 13.96 55.48 0.77 -25.48 16 16 Si 0.91 22.20 28.61 -169.99 -4.86 17.34 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.26 -6.40 7.11 56.52 0.40 -5.99 16 20 C -0.17 -3.82 9.16 -39.42 -0.36 -4.18 16 21 C -0.14 -2.61 9.89 -39.40 -0.39 -3.00 16 22 C -0.15 -1.48 5.27 -90.62 -0.48 -1.95 16 23 C -0.17 -1.65 9.71 -26.69 -0.26 -1.91 16 24 C -0.18 -1.70 10.24 -26.69 -0.27 -1.98 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.40 5.05 6.25 -40.82 -0.26 4.79 16 31 H 0.11 1.55 6.27 -52.49 -0.33 1.22 16 32 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.13 3.07 5.61 -52.48 -0.29 2.77 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.11 0.97 8.07 -51.93 -0.42 0.55 16 37 H 0.10 1.01 5.84 -51.92 -0.30 0.71 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -30.45 332.06 -7.23 -37.68 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.58 Total: 6.76 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -1.96 Total: -20.33 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.53 Total: -35.61 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.36 Total: -10.85 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.45 -7.23 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126031756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.333 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds