Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00129 * 2 1 4 4 C 1.53001 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47249 * 174.99777 * 4 3 2 6 6 N 1.46498 * 109.47116 * 294.99666 * 4 3 2 7 7 C 1.39776 * 120.00322 * 267.40779 * 6 4 3 8 8 C 1.38945 * 120.00631 * 6.54252 * 7 6 4 9 9 C 1.38014 * 119.99574 * 179.71960 * 8 7 6 10 10 C 1.38898 * 120.00046 * 0.55110 * 9 8 7 11 11 O 1.35806 * 119.99096 * 179.70100 * 10 9 8 12 12 C 1.34806 * 116.99916 * 177.56777 * 11 10 9 13 13 H 1.07999 * 120.00382 * 5.24027 * 12 11 10 14 14 C 1.38617 * 120.00042 * 185.24023 * 12 11 10 15 15 N 1.31584 * 120.00050 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00035 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47457 * 89.99731 * 16 14 12 18 18 H 1.48500 * 109.47141 * 209.99913 * 16 14 12 19 19 H 1.48507 * 109.46949 * 329.99663 * 16 14 12 20 20 C 1.38891 * 120.01535 * 359.72483 * 10 9 8 21 21 C 1.38007 * 120.00778 * 359.97438 * 20 10 9 22 22 C 1.52999 * 109.47061 * 55.00102 * 4 3 2 23 23 C 1.52996 * 117.49729 * 242.91209 * 22 4 3 24 24 C 1.53009 * 117.49715 * 174.25314 * 22 4 3 25 25 H 1.08998 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47099 * 300.00565 * 1 2 3 27 27 H 1.09007 * 109.47089 * 59.99703 * 1 2 3 28 28 H 1.09003 * 109.47330 * 300.00222 * 3 2 1 29 29 H 1.08997 * 109.47430 * 59.99876 * 3 2 1 30 30 H 0.97006 * 119.99715 * 87.41178 * 6 4 3 31 31 H 1.07998 * 120.00251 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.99886 * 180.25442 * 9 8 7 33 33 H 0.97001 * 119.99818 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.99676 * 179.97438 * 20 10 9 35 35 H 1.08000 * 120.00495 * 179.97438 * 21 20 10 36 36 H 1.08994 * 115.55078 * 28.58501 * 22 4 3 37 37 H 1.09007 * 117.49944 * 359.97438 * 23 22 4 38 38 H 1.08996 * 117.50153 * 145.02257 * 23 22 4 39 39 H 1.09004 * 117.49518 * 214.97571 * 24 22 4 40 40 H 1.09000 * 117.49841 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0903 6 7 3.9767 0.5640 1.2509 7 6 4.3260 1.3639 2.3426 8 6 4.1266 2.7380 2.2892 9 6 4.4663 3.5270 3.3695 10 6 5.0179 2.9488 4.5055 11 8 5.3577 3.7261 5.5661 12 6 5.8412 3.0970 6.6559 13 1 6.0228 2.0328 6.6290 14 6 6.1051 3.8162 7.8112 15 7 6.5766 3.2021 8.8752 16 14 5.7903 5.6568 7.8581 17 1 4.4003 5.9098 8.3151 18 1 6.7448 6.2985 8.7974 19 1 5.9756 6.2255 6.4987 20 6 5.2226 1.5760 4.5570 21 6 4.8775 0.7859 3.4795 22 6 3.9780 0.3198 -1.1826 23 6 4.6947 -0.9946 -0.8670 24 6 5.4809 0.1882 -1.4381 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 4.0265 -0.4022 1.3219 31 1 3.7021 3.1881 1.4040 32 1 4.3075 4.5945 3.3296 33 1 6.7617 3.7054 9.6835 34 1 5.6520 1.1269 5.4404 35 1 5.0371 -0.2815 3.5194 36 1 3.3196 0.3381 -2.0510 37 1 4.8513 -1.2430 0.1828 38 1 4.5081 -1.8409 -1.5279 39 1 5.8110 0.1195 -2.4746 40 1 6.1542 0.7181 -0.7643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126031756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = -25.012663 kcal Electronic energy + Delta-G solvation = -21147.070955 eV Core-core repulsion = 17928.367983 eV Total energy + Delta-G solvation = -3218.702972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96353 -39.96586 -38.35885 -37.78854 -34.96792 -34.21934 -31.99798 -30.95962 -28.74639 -27.27819 -26.67933 -24.37909 -23.87178 -23.24570 -22.36408 -20.79515 -19.49566 -19.12170 -18.20745 -17.40792 -16.87208 -16.68324 -16.52176 -15.88630 -15.64696 -15.55181 -15.36524 -15.26168 -14.35086 -14.29583 -14.03657 -13.88998 -13.69319 -13.28467 -13.16518 -12.95453 -12.61079 -12.41638 -12.32684 -12.24624 -12.00157 -11.90283 -11.22140 -11.20108 -11.00924 -10.83736 -10.52830 -10.24210 -9.79690 -8.42994 -7.97550 -6.10831 0.56485 0.89021 1.33749 1.38635 1.55332 2.33329 2.52654 2.84337 2.98099 3.01164 3.19258 3.29378 3.69304 4.02568 4.07376 4.12278 4.17617 4.27617 4.42145 4.51758 4.55920 4.57516 4.60963 4.65264 4.69208 4.79951 4.85317 4.89264 4.91873 5.09826 5.24024 5.25313 5.31239 5.33787 5.49647 5.63301 5.84045 5.87020 6.14759 6.29279 6.64866 6.92707 6.98701 7.73057 8.69480 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027315 B = 0.003666 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.840281 B = 7635.946244 C = 7957.651794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.047 3.953 4 C 0.184 3.816 5 H 0.103 0.897 6 N -0.735 5.735 7 C 0.163 3.837 8 C -0.148 4.148 9 C -0.140 4.140 10 C 0.065 3.935 11 O -0.254 6.254 12 C -0.392 4.392 13 H 0.076 0.924 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.972 3.028 17 H -0.267 1.267 18 H -0.269 1.269 19 H -0.262 1.262 20 C -0.186 4.186 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.176 4.176 24 C -0.177 4.177 25 H 0.091 0.909 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.400 0.600 31 H 0.150 0.850 32 H 0.130 0.870 33 H 0.282 0.718 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -4.853 -23.712 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.031 4.031 4 C 0.078 3.922 5 H 0.120 0.880 6 N -0.370 5.370 7 C 0.062 3.938 8 C -0.171 4.171 9 C -0.159 4.159 10 C 0.017 3.983 11 O -0.163 6.163 12 C -0.469 4.469 13 H 0.094 0.906 14 C -0.193 4.193 15 N -0.574 5.574 16 Si 0.795 3.205 17 H -0.192 1.192 18 H -0.194 1.194 19 H -0.186 1.186 20 C -0.206 4.206 21 C -0.175 4.175 22 C -0.165 4.165 23 C -0.213 4.213 24 C -0.214 4.214 25 H 0.110 0.890 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.238 0.762 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.659 -4.656 -23.629 25.948 hybrid contribution -0.001 0.084 1.003 1.007 sum -9.660 -4.572 -22.626 25.023 Atomic orbital electron populations 1.22845 0.80486 1.03321 1.00298 1.87873 1.20362 1.27988 1.95460 1.23161 0.94088 0.85080 1.00805 1.20535 0.91458 0.97371 0.82836 0.87957 1.44642 1.75119 1.07395 1.09842 1.17584 0.96962 0.90887 0.88359 1.20536 1.06009 0.91614 0.98893 1.20294 1.03437 1.00475 0.91720 1.19467 0.99050 0.90510 0.89289 1.83502 1.75642 1.35225 1.21889 1.20669 1.42084 0.94788 0.89331 0.90607 1.25265 0.96112 1.04720 0.93195 1.69757 1.45686 1.38682 1.03260 0.85187 0.78609 0.78022 0.78691 1.19238 1.19427 1.18640 1.21047 1.05959 0.93621 0.99996 1.20431 1.04483 0.99499 0.93098 1.22434 0.95071 0.99590 0.99408 1.22902 1.04341 0.92349 1.01699 1.22997 0.93680 1.02379 1.02294 0.89005 0.94666 0.92822 0.90740 0.93892 0.76171 0.83220 0.85200 0.90855 0.87633 0.85421 0.85902 0.89469 0.87971 0.87522 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.80 10.14 -148.98 -1.51 -9.31 16 3 C 0.05 0.82 5.73 71.98 0.41 1.23 16 4 C 0.18 3.38 2.46 44.99 0.11 3.49 16 5 H 0.10 1.80 6.34 -2.38 -0.02 1.78 16 6 N -0.73 -17.29 4.74 -318.80 -1.51 -18.80 16 7 C 0.16 5.04 6.65 38.22 0.25 5.29 16 8 C -0.15 -4.59 9.15 22.39 0.20 -4.39 16 9 C -0.14 -5.39 9.98 22.37 0.22 -5.17 16 10 C 0.07 3.14 6.65 22.58 0.15 3.29 16 11 O -0.25 -14.22 8.58 -23.11 -0.20 -14.42 16 12 C -0.39 -23.88 9.94 67.91 0.67 -23.20 16 13 H 0.08 4.85 5.42 -2.91 -0.02 4.84 16 14 C 0.00 0.24 5.49 84.82 0.47 0.70 16 15 N -0.93 -57.38 13.96 21.61 0.30 -57.08 16 16 Si 0.97 46.82 28.61 68.60 1.96 48.78 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 20 C -0.19 -8.51 9.16 22.37 0.20 -8.31 16 21 C -0.15 -5.54 9.89 22.39 0.22 -5.32 16 22 C -0.15 -2.30 5.27 -10.79 -0.06 -2.36 16 23 C -0.18 -2.89 9.71 30.62 0.30 -2.59 16 24 C -0.18 -2.83 10.24 30.62 0.31 -2.51 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.40 9.13 6.25 -92.70 -0.58 8.55 16 31 H 0.15 3.49 6.27 -2.91 -0.02 3.48 16 32 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 34 H 0.11 5.32 5.61 -2.91 -0.02 5.31 16 35 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.12 1.64 8.07 -2.39 -0.02 1.62 16 37 H 0.09 1.61 5.84 -2.38 -0.01 1.59 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -68.88 332.06 4.24 -64.64 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.47 Total: 24.37 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 4.73 Total: -38.20 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.21 Total: -75.87 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.71 Total: -23.72 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.96 Total: 48.78 kcal Total: -68.88 4.24 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126031756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.628 kcal (2) G-P(sol) polarization free energy of solvation -68.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds