Wall clock time and date at job start Mon Mar 30 2020 01:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42908 * 109.46754 * 2 1 4 4 C 1.42902 * 113.99868 * 180.02562 * 3 2 1 5 5 C 1.53778 * 113.61202 * 209.99845 * 4 3 2 6 6 C 1.53773 * 87.08255 * 220.01742 * 5 4 3 7 7 N 1.46497 * 113.61652 * 139.98099 * 6 5 4 8 8 C 1.39789 * 120.00165 * 155.00085 * 7 6 5 9 9 C 1.38945 * 120.00356 * 180.02562 * 8 7 6 10 10 C 1.38013 * 119.98987 * 179.97438 * 9 8 7 11 11 C 1.38902 * 120.00970 * 359.97058 * 10 9 8 12 12 O 1.35791 * 119.99602 * 180.02562 * 11 10 9 13 13 C 1.34814 * 117.00275 * 5.54237 * 12 11 10 14 14 H 1.08001 * 119.99433 * 354.94541 * 13 12 11 15 15 C 1.38623 * 120.00152 * 174.94460 * 13 12 11 16 16 N 1.31580 * 119.99790 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99810 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47073 * 90.00490 * 17 15 13 19 19 H 1.48497 * 109.46725 * 210.00116 * 17 15 13 20 20 H 1.48495 * 109.47445 * 330.00022 * 17 15 13 21 21 C 1.38899 * 120.00547 * 0.28614 * 11 10 9 22 22 C 1.38007 * 120.00976 * 359.48072 * 21 11 10 23 23 C 1.53774 * 113.61400 * 112.50275 * 4 3 2 24 24 H 1.08994 * 109.47258 * 299.99550 * 1 2 3 25 25 H 1.08997 * 109.47158 * 60.00314 * 1 2 3 26 26 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47499 * 240.00152 * 2 1 3 28 28 H 1.08997 * 109.47158 * 119.99686 * 2 1 3 29 29 H 1.08995 * 112.90766 * 341.24720 * 4 3 2 30 30 H 1.09007 * 113.61393 * 105.46577 * 5 4 3 31 31 H 1.09002 * 113.61632 * 334.56829 * 5 4 3 32 32 H 1.09002 * 113.62099 * 270.80336 * 6 5 4 33 33 H 0.97001 * 120.00301 * 335.00252 * 7 6 5 34 34 H 1.07999 * 120.00813 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.99563 * 180.02562 * 10 9 8 36 36 H 0.96996 * 119.99760 * 179.97438 * 16 15 13 37 37 H 1.08002 * 119.99383 * 179.74321 * 21 11 10 38 38 H 1.08001 * 120.00378 * 180.22691 * 22 21 11 39 39 H 1.08999 * 113.61772 * 25.42901 * 23 4 3 40 40 H 1.09003 * 113.61437 * 254.52918 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.9488 2.7253 0.7039 6 6 4.9895 2.8317 -0.4232 7 7 5.2203 4.2039 -0.8812 8 6 6.4365 4.5458 -1.4795 9 6 6.6557 5.8475 -1.9135 10 6 7.8568 6.1848 -2.5037 11 6 8.8466 5.2235 -2.6633 12 8 10.0285 5.5559 -3.2436 13 6 10.2215 6.8574 -3.5374 14 1 9.4234 7.5692 -3.3861 15 6 11.4443 7.2821 -4.0336 16 7 11.6327 8.5524 -4.3198 17 14 12.8247 6.0510 -4.2944 18 1 12.7401 5.4964 -5.6693 19 1 14.1334 6.7292 -4.1140 20 1 12.6983 4.9488 -3.3074 21 6 8.6256 3.9211 -2.2344 22 6 7.4266 3.5842 -1.6398 23 6 4.0017 2.0467 -1.3024 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9290 0.5460 0.3218 30 1 4.3847 2.5318 1.6840 31 1 3.2302 3.5449 0.7135 32 1 5.9144 2.2935 -0.2158 33 1 4.5292 4.8754 -0.7693 34 1 5.8863 6.5951 -1.7890 35 1 8.0274 7.1967 -2.8407 36 1 12.4884 8.8496 -4.6666 37 1 9.3939 3.1728 -2.3624 38 1 7.2563 2.5723 -1.3030 39 1 3.2977 2.6808 -1.8414 40 1 4.4806 1.3053 -1.9422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127845289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:36 Heat of formation + Delta-G solvation = -20.861082 kcal Electronic energy + Delta-G solvation = -20391.949092 eV Core-core repulsion = 17173.426145 eV Total energy + Delta-G solvation = -3218.522946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93042 -38.96186 -37.36858 -36.23038 -33.08738 -32.12243 -31.12525 -30.24443 -27.52083 -25.88859 -25.18194 -23.79291 -23.05765 -22.17146 -20.67321 -19.79886 -17.79699 -17.51311 -17.05990 -16.44829 -15.92347 -15.64113 -15.20528 -14.45123 -13.96272 -13.79907 -13.71555 -13.51976 -13.38527 -12.90348 -12.70504 -12.61778 -12.43078 -12.24114 -12.09400 -11.85619 -11.60491 -11.51563 -11.13091 -10.98322 -10.94234 -10.75677 -10.54134 -10.07998 -9.66924 -9.28184 -9.18823 -8.53463 -8.24598 -6.49510 -6.29579 -3.94042 2.12490 2.46694 3.29448 3.31329 3.31947 3.47299 3.93327 4.33287 4.34710 4.39363 4.57741 4.59887 4.72404 4.81790 4.87214 5.00058 5.02434 5.11604 5.22672 5.32094 5.53990 5.54950 5.58810 5.60118 5.67479 5.73645 5.78386 5.88064 5.96911 6.15869 6.21104 6.44119 6.79005 6.84047 7.00099 7.01870 7.35659 7.49577 7.80350 7.93932 8.10901 8.22299 9.06913 9.73019 10.78954 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.053629 B = 0.002697 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.981611 B =10380.917309 C =10662.543035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.375 6.375 4 C 0.063 3.937 5 C -0.145 4.145 6 C 0.143 3.857 7 N -0.743 5.743 8 C 0.131 3.869 9 C -0.143 4.143 10 C -0.176 4.176 11 C 0.117 3.883 12 O -0.228 6.228 13 C -0.384 4.384 14 H 0.103 0.897 15 C 0.059 3.941 16 N -0.888 5.888 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.261 1.261 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.173 4.173 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.393 0.607 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.277 0.723 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.719 -15.699 9.365 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.294 6.294 4 C 0.004 3.996 5 C -0.184 4.184 6 C 0.035 3.965 7 N -0.376 5.376 8 C 0.033 3.967 9 C -0.165 4.165 10 C -0.195 4.195 11 C 0.066 3.934 12 O -0.135 6.135 13 C -0.460 4.460 14 H 0.121 0.879 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.185 1.185 21 C -0.169 4.169 22 C -0.172 4.172 23 C -0.213 4.213 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.228 0.772 34 H 0.127 0.873 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.433 -15.676 9.248 25.203 hybrid contribution 0.436 -0.242 -0.171 0.528 sum -16.996 -15.919 9.077 24.993 Atomic orbital electron populations 1.21750 0.93885 1.02172 1.03125 1.22502 0.95549 0.84128 0.99957 1.87954 1.20658 1.26122 1.94642 1.23478 0.81021 0.97693 0.97380 1.23631 0.98174 0.97956 0.98595 1.21863 0.96446 0.84617 0.93583 1.44173 1.15537 1.09180 1.68753 1.17479 0.86828 0.93465 0.98915 1.20298 0.97971 0.94196 1.04064 1.21116 0.93445 1.00754 1.04226 1.18967 0.86788 0.93091 0.94569 1.83569 1.31527 1.28657 1.69702 1.20707 1.01022 0.80911 1.43327 0.87945 1.24433 0.97489 0.96183 0.96188 1.69663 1.25633 1.13850 1.43559 0.86174 0.80067 0.81177 0.79407 1.20086 1.21057 1.18466 1.20010 0.97925 0.94606 1.04375 1.20175 0.93539 0.97924 1.05572 1.24134 0.99391 1.00362 0.97407 0.91912 0.91837 0.91205 0.93386 0.93473 0.89473 0.90612 0.88928 0.87725 0.77247 0.87315 0.84876 0.91324 0.86571 0.86968 0.89026 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.41 6.50 37.16 0.24 0.66 16 3 O -0.37 -3.78 10.35 -35.23 -0.36 -4.15 16 4 C 0.06 0.56 4.31 -25.92 -0.11 0.45 16 5 C -0.15 -1.32 7.66 -25.92 -0.20 -1.52 16 6 C 0.14 1.52 4.05 -67.12 -0.27 1.25 16 7 N -0.74 -9.64 5.54 -51.33 -0.28 -9.92 16 8 C 0.13 2.18 6.66 -83.70 -0.56 1.62 16 9 C -0.14 -2.62 9.89 -39.40 -0.39 -3.00 16 10 C -0.18 -3.84 9.16 -39.42 -0.36 -4.20 16 11 C 0.12 2.74 6.65 -39.09 -0.26 2.48 16 12 O -0.23 -6.15 8.58 -0.03 0.00 -6.15 16 13 C -0.38 -11.04 9.94 30.87 0.31 -10.73 16 14 H 0.10 3.00 5.43 -52.49 -0.28 2.72 16 15 C 0.06 1.69 5.49 -17.52 -0.10 1.59 16 16 N -0.89 -26.22 13.96 55.48 0.77 -25.44 16 17 Si 0.91 22.21 28.62 -169.99 -4.86 17.34 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.26 -6.40 7.11 56.52 0.40 -5.99 16 21 C -0.15 -2.99 9.98 -39.42 -0.39 -3.38 16 22 C -0.15 -2.56 9.26 -39.40 -0.36 -2.93 16 23 C -0.17 -1.75 7.71 -25.92 -0.20 -1.95 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.64 7.87 -51.93 -0.41 0.23 16 30 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 32 H 0.10 1.10 6.13 -51.93 -0.32 0.78 16 33 H 0.39 4.59 8.74 -40.82 -0.36 4.23 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.13 3.06 5.63 -52.48 -0.30 2.76 16 36 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.11 1.59 6.05 -52.49 -0.32 1.27 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -30.85 333.44 -7.75 -38.61 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.77 Total: 4.92 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -2.27 Total: -20.24 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.49 Total: -35.36 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.37 Total: -10.29 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.85 -7.75 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127845289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.746 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds