Wall clock time and date at job start Mon Mar 30 2020 01:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42908 * 109.46754 * 2 1 4 4 C 1.42902 * 113.99868 * 180.02562 * 3 2 1 5 5 C 1.53778 * 113.61202 * 209.99845 * 4 3 2 6 6 C 1.53773 * 87.08255 * 220.01742 * 5 4 3 7 7 N 1.46497 * 113.61652 * 139.98099 * 6 5 4 8 8 C 1.39789 * 120.00165 * 155.00085 * 7 6 5 9 9 C 1.38945 * 120.00356 * 180.02562 * 8 7 6 10 10 C 1.38013 * 119.98987 * 179.97438 * 9 8 7 11 11 C 1.38902 * 120.00970 * 359.97058 * 10 9 8 12 12 O 1.35791 * 119.99602 * 180.02562 * 11 10 9 13 13 C 1.34814 * 117.00275 * 5.54237 * 12 11 10 14 14 H 1.08001 * 119.99433 * 354.94541 * 13 12 11 15 15 C 1.38623 * 120.00152 * 174.94460 * 13 12 11 16 16 N 1.31580 * 119.99790 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99810 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47073 * 90.00490 * 17 15 13 19 19 H 1.48497 * 109.46725 * 210.00116 * 17 15 13 20 20 H 1.48495 * 109.47445 * 330.00022 * 17 15 13 21 21 C 1.38899 * 120.00547 * 0.28614 * 11 10 9 22 22 C 1.38007 * 120.00976 * 359.48072 * 21 11 10 23 23 C 1.53774 * 113.61400 * 112.50275 * 4 3 2 24 24 H 1.08994 * 109.47258 * 299.99550 * 1 2 3 25 25 H 1.08997 * 109.47158 * 60.00314 * 1 2 3 26 26 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47499 * 240.00152 * 2 1 3 28 28 H 1.08997 * 109.47158 * 119.99686 * 2 1 3 29 29 H 1.08995 * 112.90766 * 341.24720 * 4 3 2 30 30 H 1.09007 * 113.61393 * 105.46577 * 5 4 3 31 31 H 1.09002 * 113.61632 * 334.56829 * 5 4 3 32 32 H 1.09002 * 113.62099 * 270.80336 * 6 5 4 33 33 H 0.97001 * 120.00301 * 335.00252 * 7 6 5 34 34 H 1.07999 * 120.00813 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.99563 * 180.02562 * 10 9 8 36 36 H 0.96996 * 119.99760 * 179.97438 * 16 15 13 37 37 H 1.08002 * 119.99383 * 179.74321 * 21 11 10 38 38 H 1.08001 * 120.00378 * 180.22691 * 22 21 11 39 39 H 1.08999 * 113.61772 * 25.42901 * 23 4 3 40 40 H 1.09003 * 113.61437 * 254.52918 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.9488 2.7253 0.7039 6 6 4.9895 2.8317 -0.4232 7 7 5.2203 4.2039 -0.8812 8 6 6.4365 4.5458 -1.4795 9 6 6.6557 5.8475 -1.9135 10 6 7.8568 6.1848 -2.5037 11 6 8.8466 5.2235 -2.6633 12 8 10.0285 5.5559 -3.2436 13 6 10.2215 6.8574 -3.5374 14 1 9.4234 7.5692 -3.3861 15 6 11.4443 7.2821 -4.0336 16 7 11.6327 8.5524 -4.3198 17 14 12.8247 6.0510 -4.2944 18 1 12.7401 5.4964 -5.6693 19 1 14.1334 6.7292 -4.1140 20 1 12.6983 4.9488 -3.3074 21 6 8.6256 3.9211 -2.2344 22 6 7.4266 3.5842 -1.6398 23 6 4.0017 2.0467 -1.3024 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9290 0.5460 0.3218 30 1 4.3847 2.5318 1.6840 31 1 3.2302 3.5449 0.7135 32 1 5.9144 2.2935 -0.2158 33 1 4.5292 4.8754 -0.7693 34 1 5.8863 6.5951 -1.7890 35 1 8.0274 7.1967 -2.8407 36 1 12.4884 8.8496 -4.6666 37 1 9.3939 3.1728 -2.3624 38 1 7.2563 2.5723 -1.3030 39 1 3.2977 2.6808 -1.8414 40 1 4.4806 1.3053 -1.9422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127845289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:35 Heat of formation + Delta-G solvation = -40.237833 kcal Electronic energy + Delta-G solvation = -20392.789330 eV Core-core repulsion = 17173.426145 eV Total energy + Delta-G solvation = -3219.363185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00373 -40.36130 -38.67663 -37.32311 -34.59186 -33.95592 -31.88789 -31.65194 -29.03685 -27.02883 -26.64144 -24.90338 -23.74094 -23.51520 -22.17149 -20.75895 -19.57011 -19.11787 -18.13989 -17.73164 -16.73762 -16.52279 -16.35773 -15.96264 -15.57830 -15.39295 -15.20812 -14.60118 -14.36783 -14.25078 -14.10465 -13.84979 -13.55826 -13.36247 -13.32485 -13.14867 -12.82542 -12.53074 -12.44954 -12.19965 -11.97560 -11.82890 -11.73903 -11.63909 -11.18371 -10.94401 -10.34735 -10.22471 -9.79496 -8.42584 -7.96965 -6.10406 0.57077 0.88401 1.34068 1.39349 1.55276 2.33516 2.49080 2.84656 3.00792 3.16190 3.31203 3.61385 3.67163 3.90333 3.97381 4.12197 4.14794 4.22466 4.32519 4.46569 4.52992 4.57882 4.61949 4.78043 4.83668 4.88598 4.90738 5.02729 5.06602 5.11726 5.12849 5.24713 5.28381 5.37347 5.49711 5.63788 5.84642 5.87583 6.15954 6.38513 6.63241 6.92967 6.99479 7.73355 8.69768 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.053629 B = 0.002697 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.981611 B =10380.917309 C =10662.543035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.396 6.396 4 C 0.067 3.933 5 C -0.138 4.138 6 C 0.133 3.867 7 N -0.733 5.733 8 C 0.160 3.840 9 C -0.153 4.153 10 C -0.188 4.188 11 C 0.065 3.935 12 O -0.254 6.254 13 C -0.390 4.390 14 H 0.077 0.923 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.973 3.027 18 H -0.267 1.267 19 H -0.270 1.270 20 H -0.262 1.262 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.173 4.173 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.402 0.598 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.282 0.718 37 H 0.130 0.870 38 H 0.153 0.847 39 H 0.077 0.923 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.099 -18.951 10.909 29.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.316 6.316 4 C 0.009 3.991 5 C -0.177 4.177 6 C 0.027 3.973 7 N -0.365 5.365 8 C 0.059 3.941 9 C -0.175 4.175 10 C -0.208 4.208 11 C 0.017 3.983 12 O -0.163 6.163 13 C -0.467 4.467 14 H 0.094 0.906 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.796 3.204 18 H -0.192 1.192 19 H -0.195 1.195 20 H -0.186 1.186 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.212 4.212 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.237 0.763 34 H 0.149 0.851 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.095 0.905 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.895 -18.963 10.828 28.877 hybrid contribution 0.470 0.627 -0.485 0.921 sum -18.425 -18.336 10.344 27.977 Atomic orbital electron populations 1.21775 0.93370 1.03249 1.02494 1.22697 0.96090 0.83171 1.00846 1.87933 1.21204 1.27780 1.94679 1.23513 0.80900 0.98424 0.96260 1.23569 0.97359 0.98020 0.98709 1.22148 0.97458 0.83069 0.94621 1.44337 1.14144 1.10759 1.67227 1.17604 0.87788 0.92511 0.96212 1.20464 0.97202 0.95889 1.03965 1.21068 0.94951 0.99526 1.05247 1.19482 0.86468 0.95052 0.97321 1.83495 1.33585 1.27051 1.72188 1.20669 1.00766 0.81825 1.43464 0.90558 1.25284 0.99920 0.98116 0.96169 1.69755 1.26640 1.15550 1.45397 0.85172 0.77266 0.78614 0.79370 1.19234 1.19508 1.18649 1.20312 0.99328 0.93230 1.03211 1.20554 0.92176 0.99788 1.04335 1.24077 0.98965 1.00231 0.97952 0.92286 0.92708 0.89320 0.92870 0.92126 0.87318 0.89182 0.89440 0.86678 0.76276 0.85062 0.87568 0.90876 0.85205 0.83005 0.90460 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 71.98 0.74 -0.86 16 2 C 0.05 0.59 6.50 71.98 0.47 1.05 16 3 O -0.40 -6.92 10.35 -148.98 -1.54 -8.47 16 4 C 0.07 0.96 4.31 31.12 0.13 1.09 16 5 C -0.14 -2.00 7.66 31.12 0.24 -1.76 16 6 C 0.13 2.30 4.05 45.52 0.18 2.48 16 7 N -0.73 -16.44 5.54 -316.32 -1.75 -18.19 16 8 C 0.16 4.87 6.66 38.21 0.25 5.13 16 9 C -0.15 -5.46 9.89 22.39 0.22 -5.24 16 10 C -0.19 -8.54 9.16 22.38 0.20 -8.33 16 11 C 0.07 3.13 6.65 22.59 0.15 3.28 16 12 O -0.25 -14.23 8.58 -23.04 -0.20 -14.43 16 13 C -0.39 -23.73 9.94 67.91 0.68 -23.05 16 14 H 0.08 4.86 5.43 -2.91 -0.02 4.85 16 15 C 0.00 0.11 5.49 84.82 0.47 0.58 16 16 N -0.93 -57.27 13.96 21.61 0.30 -56.97 16 17 Si 0.97 46.83 28.62 68.60 1.96 48.79 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 21 C -0.14 -5.45 9.98 22.37 0.22 -5.23 16 22 C -0.15 -4.52 9.26 22.39 0.21 -4.31 16 23 C -0.17 -2.90 7.71 31.12 0.24 -2.66 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.11 1.10 7.87 -2.39 -0.02 1.08 16 30 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 32 H 0.12 1.81 6.13 -2.39 -0.01 1.80 16 33 H 0.40 8.07 8.74 -92.71 -0.81 7.26 16 34 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 35 H 0.11 5.31 5.63 -2.91 -0.02 5.30 16 36 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 37 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.15 3.50 6.05 -2.91 -0.02 3.48 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -69.87 333.44 3.42 -66.46 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.23 Total: 20.63 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.41 Total: -37.83 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -1.45 Total: -75.16 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -1.74 Total: -22.90 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.96 Total: 48.79 kcal Total: -69.87 3.42 -66.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127845289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.218 kcal (2) G-P(sol) polarization free energy of solvation -69.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds