Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46985 * 2 1 4 4 C 1.42905 * 114.00072 * 179.97438 * 3 2 1 5 5 C 1.53779 * 113.61148 * 149.99772 * 4 3 2 6 6 C 1.53781 * 87.07867 * 89.20302 * 5 4 3 7 7 N 1.46504 * 113.61416 * 139.97718 * 6 5 4 8 8 C 1.39678 * 119.99824 * 156.52774 * 7 6 5 9 9 C 1.39004 * 120.03795 * 359.97438 * 8 7 6 10 10 C 1.38148 * 120.05687 * 179.97438 * 9 8 7 11 11 C 1.38172 * 120.14824 * 0.04704 * 10 9 8 12 12 C 1.38918 * 120.07741 * 359.96845 * 11 10 9 13 13 O 1.35745 * 120.03251 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99917 * 174.48470 * 13 12 11 15 15 H 1.07996 * 120.00172 * 5.04345 * 14 13 12 16 16 C 1.38655 * 119.99896 * 185.05339 * 14 13 12 17 17 N 1.31560 * 119.99998 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99953 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46901 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47125 * 119.99575 * 18 16 14 21 21 H 1.48497 * 109.46962 * 239.99459 * 18 16 14 22 22 C 1.38750 * 120.03487 * 180.02562 * 8 7 6 23 23 C 1.53780 * 87.17108 * 25.39023 * 6 5 4 24 24 H 1.08998 * 109.47268 * 59.99952 * 1 2 3 25 25 H 1.08996 * 109.46668 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46782 * 299.99600 * 1 2 3 27 27 H 1.09005 * 109.47141 * 240.00396 * 2 1 3 28 28 H 1.08999 * 109.47787 * 119.99960 * 2 1 3 29 29 H 1.09002 * 112.84707 * 18.81180 * 4 3 2 30 30 H 1.08996 * 113.61721 * 334.65526 * 5 4 3 31 31 H 1.08999 * 113.61566 * 203.75139 * 5 4 3 32 32 H 1.09003 * 113.61544 * 270.79760 * 6 5 4 33 33 H 0.97000 * 119.99891 * 336.52936 * 7 6 5 34 34 H 1.07996 * 119.97142 * 359.97438 * 9 8 7 35 35 H 1.08002 * 119.92904 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.96097 * 180.02562 * 11 10 9 37 37 H 0.96994 * 120.00074 * 179.97438 * 17 16 14 38 38 H 1.07991 * 120.07491 * 0.27605 * 22 8 7 39 39 H 1.08997 * 113.61482 * 89.16277 * 23 6 5 40 40 H 1.09001 * 113.61140 * 220.06213 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9488 2.7252 -0.7040 6 6 3.8411 3.4323 0.6574 7 7 4.9545 4.3429 0.9355 8 6 4.7883 5.3930 1.8413 9 6 3.5666 5.5751 2.4790 10 6 3.4020 6.6133 3.3754 11 6 4.4498 7.4742 3.6403 12 6 5.6731 7.2979 3.0061 13 8 6.7017 8.1445 3.2666 14 6 7.8927 7.8511 2.7069 15 1 7.9767 7.0229 2.0189 16 6 9.0098 8.6127 3.0147 17 7 8.9074 9.6218 3.8526 18 14 10.6600 8.2058 2.2398 19 1 10.5091 7.0336 1.3407 20 1 11.1402 9.3724 1.4565 21 1 11.6428 7.8876 3.3066 22 6 5.8421 6.2563 2.1048 23 6 4.0026 2.0465 1.3042 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9280 0.5457 -0.3230 30 1 3.2638 3.1180 -1.4554 31 1 4.9718 2.6339 -1.0688 32 1 2.8670 3.8873 0.8373 33 1 5.8071 4.2166 0.4904 34 1 2.7455 4.9044 2.2735 35 1 2.4520 6.7525 3.8701 36 1 4.3178 8.2845 4.3420 37 1 9.6889 10.1543 4.0682 38 1 6.7906 6.1203 1.6068 39 1 5.0403 1.7693 1.4894 40 1 3.3609 1.8921 2.1717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131508853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = -23.382711 kcal Electronic energy + Delta-G solvation = -20705.707135 eV Core-core repulsion = 17487.074843 eV Total energy + Delta-G solvation = -3218.632292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92673 -38.81296 -37.15167 -36.02599 -33.28765 -32.10726 -31.06068 -28.99035 -27.93096 -25.84530 -25.19283 -24.11467 -23.13679 -21.72422 -20.73876 -19.67755 -17.89661 -17.30041 -16.87691 -15.99684 -15.76543 -15.24766 -15.20845 -14.66826 -14.24340 -13.78628 -13.65063 -13.40124 -13.27595 -12.93498 -12.80349 -12.66266 -12.29252 -12.12987 -11.90997 -11.62147 -11.55737 -11.43518 -11.06245 -10.76363 -10.68758 -10.51166 -10.41477 -10.29669 -9.67767 -9.32193 -9.30593 -8.71752 -7.30272 -6.70355 -6.37295 -3.96278 2.44121 2.62073 3.16058 3.16978 3.22214 3.30272 3.85697 4.02638 4.40803 4.46823 4.69468 4.77445 4.83509 4.91763 4.98891 5.06136 5.09990 5.20525 5.39746 5.43883 5.55193 5.59346 5.66483 5.77170 5.80800 5.92328 5.93862 6.00444 6.13165 6.34015 6.44231 6.71946 6.72378 7.02203 7.10690 7.20602 7.45734 7.54688 7.73317 8.08769 8.09543 8.27714 9.09053 9.82618 10.81344 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.003336 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.201111 B = 8392.158849 C = 9233.375113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.367 6.367 4 C 0.065 3.935 5 C -0.149 4.149 6 C 0.146 3.854 7 N -0.743 5.743 8 C 0.248 3.752 9 C -0.278 4.278 10 C -0.040 4.040 11 C -0.237 4.237 12 C 0.189 3.811 13 O -0.180 6.180 14 C -0.387 4.387 15 H 0.091 0.909 16 C 0.037 3.963 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.302 4.302 23 C -0.176 4.176 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.394 0.606 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.268 0.732 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -18.040 -8.265 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.286 6.286 4 C 0.007 3.993 5 C -0.188 4.188 6 C 0.039 3.961 7 N -0.373 5.373 8 C 0.147 3.853 9 C -0.301 4.301 10 C -0.059 4.059 11 C -0.258 4.258 12 C 0.135 3.865 13 O -0.083 6.083 14 C -0.464 4.464 15 H 0.108 0.892 16 C -0.167 4.167 17 N -0.501 5.501 18 Si 0.765 3.235 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.326 4.326 23 C -0.215 4.215 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.228 0.772 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.327 -17.561 -8.032 22.387 hybrid contribution 1.386 -0.584 -0.575 1.611 sum -9.941 -18.145 -8.607 22.409 Atomic orbital electron populations 1.21749 0.93713 1.02197 1.03286 1.22521 0.95589 0.83842 0.99993 1.87899 1.19795 1.26284 1.94611 1.22889 0.81485 0.97626 0.97345 1.23619 1.01737 0.95414 0.98006 1.22202 0.92098 0.87980 0.93774 1.44572 1.13782 1.30914 1.48023 1.17500 0.93277 0.86436 0.88067 1.20126 0.96659 1.05191 1.08115 1.20382 0.96833 0.93273 0.95433 1.20037 0.92622 1.05114 1.08008 1.19074 0.88859 0.87787 0.90806 1.83987 1.16557 1.43423 1.64328 1.21339 0.83174 1.16294 1.25575 0.89183 1.25270 0.98955 0.95670 0.96758 1.70052 1.30474 1.17269 1.32286 0.85667 0.80660 0.78515 0.78660 1.19261 1.20242 1.20247 1.20512 0.99856 1.02202 1.10000 1.24112 1.01642 0.97931 0.97839 0.91832 0.91164 0.91700 0.93448 0.93335 0.90751 0.90160 0.88779 0.87351 0.77193 0.87710 0.87234 0.86954 0.92216 0.85858 0.89137 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.45 6.50 37.16 0.24 0.69 16 3 O -0.37 -3.94 10.27 -35.23 -0.36 -4.30 16 4 C 0.07 0.64 4.38 -25.83 -0.11 0.52 16 5 C -0.15 -1.52 7.66 -25.92 -0.20 -1.72 16 6 C 0.15 1.86 3.94 -67.12 -0.26 1.59 16 7 N -0.74 -11.34 5.54 -51.39 -0.28 -11.62 16 8 C 0.25 4.79 6.65 -83.81 -0.56 4.23 16 9 C -0.28 -5.18 9.26 -39.33 -0.36 -5.54 16 10 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16 11 C -0.24 -5.32 9.99 -39.35 -0.39 -5.71 16 12 C 0.19 4.78 6.64 -39.13 -0.26 4.52 16 13 O -0.18 -5.29 9.76 0.06 0.00 -5.29 16 14 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 15 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 16 C 0.04 1.04 5.49 -17.51 -0.10 0.94 16 17 N -0.87 -25.91 13.67 55.48 0.76 -25.15 16 18 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 C -0.30 -6.83 9.01 -39.19 -0.35 -7.18 16 23 C -0.18 -1.96 7.72 -25.83 -0.20 -2.16 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.11 1.50 6.20 -51.93 -0.32 1.18 16 33 H 0.39 5.50 8.72 -40.82 -0.36 5.15 16 34 H 0.10 1.72 6.07 -52.49 -0.32 1.40 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 37 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 38 H 0.12 2.79 5.64 -52.49 -0.30 2.50 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -31.96 334.53 -7.91 -39.87 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.76 Total: 7.99 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.28 Total: -22.43 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.47 Total: -36.77 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.36 Total: -9.60 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.96 -7.91 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131508853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.486 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds