Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46985 * 2 1 4 4 C 1.42905 * 114.00072 * 179.97438 * 3 2 1 5 5 C 1.53779 * 113.61148 * 149.99772 * 4 3 2 6 6 C 1.53781 * 87.07867 * 89.20302 * 5 4 3 7 7 N 1.46504 * 113.61416 * 139.97718 * 6 5 4 8 8 C 1.39678 * 119.99824 * 156.52774 * 7 6 5 9 9 C 1.39004 * 120.03795 * 359.97438 * 8 7 6 10 10 C 1.38148 * 120.05687 * 179.97438 * 9 8 7 11 11 C 1.38172 * 120.14824 * 0.04704 * 10 9 8 12 12 C 1.38918 * 120.07741 * 359.96845 * 11 10 9 13 13 O 1.35745 * 120.03251 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99917 * 174.48470 * 13 12 11 15 15 H 1.07996 * 120.00172 * 5.04345 * 14 13 12 16 16 C 1.38655 * 119.99896 * 185.05339 * 14 13 12 17 17 N 1.31560 * 119.99998 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99953 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46901 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47125 * 119.99575 * 18 16 14 21 21 H 1.48497 * 109.46962 * 239.99459 * 18 16 14 22 22 C 1.38750 * 120.03487 * 180.02562 * 8 7 6 23 23 C 1.53780 * 87.17108 * 25.39023 * 6 5 4 24 24 H 1.08998 * 109.47268 * 59.99952 * 1 2 3 25 25 H 1.08996 * 109.46668 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46782 * 299.99600 * 1 2 3 27 27 H 1.09005 * 109.47141 * 240.00396 * 2 1 3 28 28 H 1.08999 * 109.47787 * 119.99960 * 2 1 3 29 29 H 1.09002 * 112.84707 * 18.81180 * 4 3 2 30 30 H 1.08996 * 113.61721 * 334.65526 * 5 4 3 31 31 H 1.08999 * 113.61566 * 203.75139 * 5 4 3 32 32 H 1.09003 * 113.61544 * 270.79760 * 6 5 4 33 33 H 0.97000 * 119.99891 * 336.52936 * 7 6 5 34 34 H 1.07996 * 119.97142 * 359.97438 * 9 8 7 35 35 H 1.08002 * 119.92904 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.96097 * 180.02562 * 11 10 9 37 37 H 0.96994 * 120.00074 * 179.97438 * 17 16 14 38 38 H 1.07991 * 120.07491 * 0.27605 * 22 8 7 39 39 H 1.08997 * 113.61482 * 89.16277 * 23 6 5 40 40 H 1.09001 * 113.61140 * 220.06213 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9488 2.7252 -0.7040 6 6 3.8411 3.4323 0.6574 7 7 4.9545 4.3429 0.9355 8 6 4.7883 5.3930 1.8413 9 6 3.5666 5.5751 2.4790 10 6 3.4020 6.6133 3.3754 11 6 4.4498 7.4742 3.6403 12 6 5.6731 7.2979 3.0061 13 8 6.7017 8.1445 3.2666 14 6 7.8927 7.8511 2.7069 15 1 7.9767 7.0229 2.0189 16 6 9.0098 8.6127 3.0147 17 7 8.9074 9.6218 3.8526 18 14 10.6600 8.2058 2.2398 19 1 10.5091 7.0336 1.3407 20 1 11.1402 9.3724 1.4565 21 1 11.6428 7.8876 3.3066 22 6 5.8421 6.2563 2.1048 23 6 4.0026 2.0465 1.3042 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9280 0.5457 -0.3230 30 1 3.2638 3.1180 -1.4554 31 1 4.9718 2.6339 -1.0688 32 1 2.8670 3.8873 0.8373 33 1 5.8071 4.2166 0.4904 34 1 2.7455 4.9044 2.2735 35 1 2.4520 6.7525 3.8701 36 1 4.3178 8.2845 4.3420 37 1 9.6889 10.1543 4.0682 38 1 6.7906 6.1203 1.6068 39 1 5.0403 1.7693 1.4894 40 1 3.3609 1.8921 2.1717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131508853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = -43.984619 kcal Electronic energy + Delta-G solvation = -20706.600501 eV Core-core repulsion = 17487.074843 eV Total energy + Delta-G solvation = -3219.525658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03079 -40.37436 -38.56199 -37.24299 -34.70781 -34.07135 -31.73272 -30.66271 -29.51013 -27.25032 -26.66979 -25.19148 -23.71938 -23.39492 -22.25268 -20.75255 -19.67629 -19.03664 -17.77292 -17.16155 -16.81072 -16.62996 -16.44005 -15.97724 -15.92174 -15.50187 -15.29658 -14.53951 -14.40839 -14.22418 -14.02861 -13.66723 -13.52822 -13.45714 -13.18300 -12.81811 -12.76833 -12.47200 -12.39836 -12.20130 -12.11055 -11.93068 -11.73775 -11.37532 -11.19752 -10.88191 -10.55898 -10.40463 -9.10585 -8.44582 -8.21454 -6.12889 0.76519 0.91484 1.34854 1.44613 1.53581 2.19160 2.58160 2.63494 2.89618 3.25764 3.57020 3.60143 3.66783 3.94230 4.04536 4.22567 4.23363 4.26413 4.41181 4.46632 4.53271 4.61432 4.70059 4.75583 4.81507 4.87463 4.98844 5.04402 5.07545 5.09322 5.14433 5.17604 5.26509 5.30731 5.48769 5.76050 5.81148 6.05163 6.12343 6.34566 6.61638 6.90729 7.00820 7.84138 8.79383 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.003336 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.201111 B = 8392.158849 C = 9233.375113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.388 6.388 4 C 0.074 3.926 5 C -0.140 4.140 6 C 0.131 3.869 7 N -0.732 5.732 8 C 0.256 3.744 9 C -0.267 4.267 10 C -0.027 4.027 11 C -0.262 4.262 12 C 0.153 3.847 13 O -0.232 6.232 14 C -0.409 4.409 15 H 0.100 0.900 16 C -0.026 4.026 17 N -0.923 5.923 18 Si 1.020 2.980 19 H -0.251 1.251 20 H -0.268 1.268 21 H -0.269 1.269 22 C -0.315 4.315 23 C -0.172 4.172 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.401 0.599 34 H 0.136 0.864 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.272 0.728 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 -21.207 -10.015 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.308 6.308 4 C 0.015 3.985 5 C -0.178 4.178 6 C 0.026 3.974 7 N -0.360 5.360 8 C 0.152 3.848 9 C -0.289 4.289 10 C -0.045 4.045 11 C -0.283 4.283 12 C 0.102 3.898 13 O -0.139 6.139 14 C -0.486 4.486 15 H 0.117 0.883 16 C -0.223 4.223 17 N -0.561 5.561 18 Si 0.840 3.160 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.194 1.194 22 C -0.339 4.339 23 C -0.211 4.211 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.236 0.764 34 H 0.154 0.846 35 H 0.168 0.832 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.278 -20.800 -9.820 26.074 hybrid contribution 1.346 0.195 -0.078 1.363 sum -10.932 -20.605 -9.898 25.339 Atomic orbital electron populations 1.21775 0.93174 1.03322 1.02606 1.22727 0.96125 0.82800 1.00963 1.87880 1.20220 1.28089 1.94623 1.22843 0.81431 0.98325 0.95898 1.23599 1.02805 0.94954 0.96445 1.22489 0.90595 0.88000 0.96349 1.44710 1.15057 1.29799 1.46473 1.17584 0.92552 0.86490 0.88180 1.20559 0.97016 1.04808 1.06528 1.20809 0.97259 0.91803 0.94658 1.20252 0.92897 1.06392 1.08754 1.19636 0.89007 0.88759 0.92445 1.83950 1.17674 1.45844 1.66408 1.21836 0.83697 1.16931 1.26087 0.88285 1.26614 1.03203 0.95232 0.97225 1.70201 1.31995 1.19141 1.34809 0.84509 0.74605 0.78952 0.77972 1.17458 1.19347 1.19374 1.20515 1.00692 1.02642 1.10050 1.24070 1.02002 0.96679 0.98364 0.92260 0.89192 0.92599 0.92039 0.92732 0.88380 0.90202 0.87159 0.88272 0.76372 0.84608 0.83201 0.87522 0.91916 0.86682 0.88637 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.05 0.64 6.50 71.98 0.47 1.11 16 3 O -0.39 -7.21 10.27 -148.98 -1.53 -8.74 16 4 C 0.07 1.18 4.38 31.18 0.14 1.32 16 5 C -0.14 -2.38 7.66 31.12 0.24 -2.14 16 6 C 0.13 2.95 3.94 45.52 0.18 3.13 16 7 N -0.73 -20.69 5.54 -316.51 -1.75 -22.45 16 8 C 0.26 9.53 6.65 38.20 0.25 9.78 16 9 C -0.27 -9.24 9.26 22.43 0.21 -9.04 16 10 C -0.03 -0.97 10.03 22.23 0.22 -0.75 16 11 C -0.26 -12.02 9.99 22.42 0.22 -11.79 16 12 C 0.15 8.06 6.64 22.56 0.15 8.21 16 13 O -0.23 -14.58 9.76 -22.72 -0.22 -14.80 16 14 C -0.41 -24.57 9.49 67.92 0.64 -23.92 16 15 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 16 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 17 N -0.92 -58.00 13.67 21.61 0.30 -57.71 16 18 Si 1.02 43.74 29.55 68.60 2.03 45.77 16 19 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 C -0.32 -14.50 9.01 22.52 0.20 -14.30 16 23 C -0.17 -3.32 7.72 31.18 0.24 -3.08 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.10 1.15 7.87 -2.39 -0.02 1.13 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 32 H 0.10 2.45 6.20 -2.39 -0.01 2.43 16 33 H 0.40 10.35 8.72 -92.71 -0.81 9.54 16 34 H 0.14 3.92 6.07 -2.91 -0.02 3.91 16 35 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.12 5.37 5.64 -2.92 -0.02 5.35 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.70 334.53 3.43 -70.27 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.24 Total: 31.13 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 4.37 Total: -43.47 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -1.46 Total: -80.15 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.75 Total: -23.54 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -73.70 3.43 -70.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131508853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.286 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds