Wall clock time and date at job start Mon Mar 30 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99948 * 2 1 4 4 C 1.52996 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47159 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 10 10 C 1.52999 * 109.47481 * 154.99940 * 8 7 5 11 11 C 1.50698 * 109.47141 * 295.00678 * 10 8 7 12 12 H 1.07994 * 120.00042 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99710 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00499 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47105 * 90.00059 * 15 13 11 17 17 H 1.48498 * 109.47057 * 210.00456 * 15 13 11 18 18 H 1.48503 * 109.46745 * 330.00438 * 15 13 11 19 19 C 1.50700 * 109.47514 * 275.00337 * 8 7 5 20 20 C 1.38235 * 119.99909 * 319.72923 * 19 8 7 21 21 C 1.38235 * 120.00203 * 179.78500 * 20 19 8 22 22 C 1.38243 * 119.99736 * 0.43880 * 21 20 19 23 23 C 1.38244 * 119.99802 * 359.81374 * 22 21 20 24 24 C 1.38234 * 120.00041 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46704 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47093 * 300.00015 * 1 2 3 27 27 H 1.08994 * 109.46971 * 59.99650 * 1 2 3 28 28 H 1.09004 * 109.47053 * 60.00021 * 3 2 1 29 29 H 1.09000 * 109.47521 * 300.00363 * 3 2 1 30 30 H 1.09004 * 109.47066 * 60.00083 * 4 3 2 31 31 H 1.08994 * 109.47405 * 299.99913 * 4 3 2 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.09006 * 109.46798 * 55.00299 * 10 8 7 34 34 H 1.08995 * 109.47322 * 174.99759 * 10 8 7 35 35 H 0.96993 * 120.00753 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99755 * 359.97438 * 20 19 8 37 37 H 1.07999 * 120.00430 * 180.26737 * 21 20 19 38 38 H 1.07994 * 120.00105 * 179.82908 * 22 21 20 39 39 H 1.07997 * 119.99648 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.99956 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4355 3.5426 -0.0004 7 7 5.4888 2.7023 0.0061 8 6 6.0846 4.0406 0.0115 9 1 5.4609 4.7136 0.5998 10 6 7.4838 3.9735 0.6270 11 6 7.3761 3.5790 2.0774 12 1 6.4067 3.3950 2.5165 13 6 8.5153 3.4530 2.8439 14 7 9.6957 3.6776 2.3094 15 14 8.3819 2.9647 4.6421 16 1 8.4393 1.4854 4.7588 17 1 9.5068 3.5653 5.4028 18 1 7.0933 3.4551 5.1938 19 6 6.1819 4.5531 -1.4023 20 6 6.5577 3.6995 -2.4226 21 6 6.6426 4.1684 -3.7202 22 6 6.3604 5.4933 -3.9962 23 6 5.9896 6.3482 -2.9750 24 6 5.9005 5.8781 -1.6781 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8574 0.6436 -0.8891 31 1 3.8567 0.6440 0.8908 32 1 6.0590 1.9176 0.0067 33 1 8.0806 3.2342 0.0927 34 1 7.9616 4.9501 0.5505 35 1 10.4971 3.5893 2.8487 36 1 6.7821 2.6654 -2.2063 37 1 6.9321 3.5005 -4.5180 38 1 6.4294 5.8604 -5.0095 39 1 5.7687 7.3831 -3.1907 40 1 5.6104 6.5459 -0.8805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153626240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:42 Heat of formation + Delta-G solvation = -74.320000 kcal Electronic energy + Delta-G solvation = -21207.345046 eV Core-core repulsion = 17986.503947 eV Total energy + Delta-G solvation = -3220.841099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71606 -38.57624 -37.66321 -35.22334 -32.76531 -31.95184 -30.74652 -30.41920 -28.78418 -26.69175 -25.03869 -23.36136 -22.29588 -21.94690 -20.18443 -19.68165 -17.22547 -16.82757 -16.22898 -16.17465 -15.71132 -15.43492 -14.95500 -14.80823 -14.51698 -14.44867 -13.91397 -13.20795 -13.02173 -12.97779 -12.57156 -12.46591 -12.12009 -11.98855 -11.53754 -11.36797 -11.18462 -11.15210 -10.92628 -10.74137 -10.61300 -10.47013 -9.79590 -9.71665 -9.45594 -9.28500 -8.55813 -8.47224 -8.43356 -8.19077 -6.10219 -4.13911 1.77189 1.79700 3.08280 3.26361 3.33923 3.35748 3.37793 4.09460 4.29226 4.39224 4.94390 5.09101 5.19023 5.24565 5.26363 5.26546 5.26809 5.35413 5.40813 5.52080 5.53231 5.65040 5.84350 5.90212 5.90548 5.93898 6.16905 6.35096 6.43221 6.57134 6.84092 6.84642 6.89773 7.07358 7.10284 7.39850 7.48042 7.60656 7.86299 8.09913 8.24611 8.72832 8.91979 9.51357 11.00290 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.006604 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.608949 B = 4238.883583 C = 6787.273089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.078 3.922 4 C -0.141 4.141 5 C 0.515 3.485 6 O -0.554 6.554 7 N -0.698 5.698 8 C 0.184 3.816 9 H 0.087 0.913 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.071 4.071 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.403 0.597 33 H 0.025 0.975 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 -3.526 -9.144 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C 0.001 3.999 4 C -0.181 4.181 5 C 0.301 3.699 6 O -0.433 6.433 7 N -0.347 5.347 8 C 0.080 3.920 9 H 0.105 0.895 10 C -0.014 4.014 11 C -0.559 4.559 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.072 4.072 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.237 0.763 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.084 -2.978 -9.084 14.637 hybrid contribution 0.231 -0.406 0.998 1.102 sum -10.853 -3.384 -8.086 13.950 Atomic orbital electron populations 1.22704 0.80984 1.02458 1.00109 1.87801 1.19761 1.28461 1.95561 1.22168 0.92309 0.83755 1.01634 1.21476 0.95028 0.96093 1.05500 1.20258 0.82939 0.90527 0.76204 1.90664 1.61151 1.40746 1.50749 1.45956 1.05767 1.09902 1.73083 1.20254 0.98566 0.82909 0.90317 0.89521 1.19395 0.87848 0.98642 0.95489 1.21129 0.92860 1.47059 0.94863 0.92389 1.24985 0.95363 0.95297 0.98452 1.69953 0.97625 1.49039 1.36440 0.86597 0.77756 0.78646 0.85050 1.20633 1.21213 1.19862 1.20552 0.96282 0.93856 0.96547 1.20917 0.99621 0.99696 0.92422 1.21048 1.00990 0.95745 0.96529 1.21001 1.01588 0.94058 0.98683 1.21044 1.00663 0.99298 0.93088 1.21020 0.99677 0.95442 0.96547 0.89761 0.94031 0.94112 0.92402 0.92547 0.88434 0.88030 0.76288 0.95696 0.94752 0.92844 0.86518 0.86716 0.86841 0.86613 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.40 -5.15 10.70 -35.23 -0.38 -5.52 16 3 C 0.08 1.06 5.23 37.16 0.19 1.25 16 4 C -0.14 -1.90 6.07 -27.88 -0.17 -2.07 16 5 C 0.52 8.89 7.79 -10.98 -0.09 8.81 16 6 O -0.55 -11.37 15.64 5.55 0.09 -11.29 16 7 N -0.70 -12.35 4.04 -54.93 -0.22 -12.57 16 8 C 0.18 3.71 2.11 -69.08 -0.15 3.56 16 9 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16 10 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 11 C -0.52 -13.69 8.84 -34.44 -0.30 -13.99 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 15 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 20 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 21 C -0.13 -1.85 10.05 -39.58 -0.40 -2.24 16 22 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 24 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.40 6.47 8.60 -40.82 -0.35 6.12 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.12 1.81 7.73 -52.48 -0.41 1.41 16 37 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -31.17 344.80 -7.86 -39.03 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.18 Total: 6.06 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.08 Total: -12.09 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.51 Total: -37.31 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.29 Total: -16.81 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.17 -7.86 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153626240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.295 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds