Wall clock time and date at job start Mon Mar 30 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99948 * 2 1 4 4 C 1.52996 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47159 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 10 10 C 1.52999 * 109.47481 * 154.99940 * 8 7 5 11 11 C 1.50698 * 109.47141 * 295.00678 * 10 8 7 12 12 H 1.07994 * 120.00042 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99710 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00499 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47105 * 90.00059 * 15 13 11 17 17 H 1.48498 * 109.47057 * 210.00456 * 15 13 11 18 18 H 1.48503 * 109.46745 * 330.00438 * 15 13 11 19 19 C 1.50700 * 109.47514 * 275.00337 * 8 7 5 20 20 C 1.38235 * 119.99909 * 319.72923 * 19 8 7 21 21 C 1.38235 * 120.00203 * 179.78500 * 20 19 8 22 22 C 1.38243 * 119.99736 * 0.43880 * 21 20 19 23 23 C 1.38244 * 119.99802 * 359.81374 * 22 21 20 24 24 C 1.38234 * 120.00041 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46704 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47093 * 300.00015 * 1 2 3 27 27 H 1.08994 * 109.46971 * 59.99650 * 1 2 3 28 28 H 1.09004 * 109.47053 * 60.00021 * 3 2 1 29 29 H 1.09000 * 109.47521 * 300.00363 * 3 2 1 30 30 H 1.09004 * 109.47066 * 60.00083 * 4 3 2 31 31 H 1.08994 * 109.47405 * 299.99913 * 4 3 2 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.09006 * 109.46798 * 55.00299 * 10 8 7 34 34 H 1.08995 * 109.47322 * 174.99759 * 10 8 7 35 35 H 0.96993 * 120.00753 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99755 * 359.97438 * 20 19 8 37 37 H 1.07999 * 120.00430 * 180.26737 * 21 20 19 38 38 H 1.07994 * 120.00105 * 179.82908 * 22 21 20 39 39 H 1.07997 * 119.99648 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.99956 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4355 3.5426 -0.0004 7 7 5.4888 2.7023 0.0061 8 6 6.0846 4.0406 0.0115 9 1 5.4609 4.7136 0.5998 10 6 7.4838 3.9735 0.6270 11 6 7.3761 3.5790 2.0774 12 1 6.4067 3.3950 2.5165 13 6 8.5153 3.4530 2.8439 14 7 9.6957 3.6776 2.3094 15 14 8.3819 2.9647 4.6421 16 1 8.4393 1.4854 4.7588 17 1 9.5068 3.5653 5.4028 18 1 7.0933 3.4551 5.1938 19 6 6.1819 4.5531 -1.4023 20 6 6.5577 3.6995 -2.4226 21 6 6.6426 4.1684 -3.7202 22 6 6.3604 5.4933 -3.9962 23 6 5.9896 6.3482 -2.9750 24 6 5.9005 5.8781 -1.6781 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8574 0.6436 -0.8891 31 1 3.8567 0.6440 0.8908 32 1 6.0590 1.9176 0.0067 33 1 8.0806 3.2342 0.0927 34 1 7.9616 4.9501 0.5505 35 1 10.4971 3.5893 2.8487 36 1 6.7821 2.6654 -2.2063 37 1 6.9321 3.5005 -4.5180 38 1 6.4294 5.8604 -5.0095 39 1 5.7687 7.3831 -3.1907 40 1 5.6104 6.5459 -0.8805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153626240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:42 Heat of formation + Delta-G solvation = -93.397450 kcal Electronic energy + Delta-G solvation = -21208.172306 eV Core-core repulsion = 17986.503947 eV Total energy + Delta-G solvation = -3221.668359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12403 -39.82787 -38.68890 -36.80690 -34.72540 -33.25716 -31.98721 -31.64805 -30.51773 -27.61822 -26.68870 -24.60265 -23.78145 -23.32017 -21.60509 -21.10924 -18.72976 -18.31501 -17.71006 -17.30304 -17.02671 -16.76932 -16.32420 -16.21948 -15.84033 -15.63955 -15.20534 -14.61537 -14.42092 -14.19587 -14.16689 -13.77997 -13.68426 -13.46173 -12.93178 -12.80957 -12.60196 -12.47819 -12.37669 -12.14017 -12.13642 -11.87266 -11.59287 -11.33447 -10.90868 -10.67571 -10.56924 -9.98198 -9.75121 -9.51818 -8.20214 -6.30503 0.51364 0.56366 1.39776 1.41624 1.51703 1.70130 2.14450 2.40159 2.92573 3.07149 3.15631 3.78823 3.97449 4.03905 4.06191 4.18495 4.22112 4.32949 4.44501 4.52331 4.52742 4.57783 4.66171 4.76701 4.79021 4.81204 4.84867 4.85601 5.13150 5.20647 5.28521 5.43424 5.61160 5.61660 5.64714 5.78039 5.90818 6.14400 6.16155 6.20711 6.68977 6.82336 7.33221 7.38891 8.90518 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.006604 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.608949 B = 4238.883583 C = 6787.273089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.083 3.917 4 C -0.130 4.130 5 C 0.514 3.486 6 O -0.590 6.590 7 N -0.695 5.695 8 C 0.200 3.800 9 H 0.057 0.943 10 C 0.037 3.963 11 C -0.530 4.530 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.956 3.044 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.134 4.134 25 H 0.105 0.895 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.411 0.589 33 H 0.013 0.987 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.608 -4.670 -10.357 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.006 3.994 4 C -0.170 4.170 5 C 0.301 3.699 6 O -0.471 6.471 7 N -0.344 5.344 8 C 0.094 3.906 9 H 0.076 0.924 10 C 0.000 4.000 11 C -0.568 4.568 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.781 3.219 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.153 4.153 25 H 0.123 0.877 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.247 0.753 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.803 -4.148 -10.300 16.205 hybrid contribution 0.416 -0.013 1.304 1.369 sum -11.387 -4.161 -8.996 15.097 Atomic orbital electron populations 1.22954 0.79236 1.04107 1.00766 1.87770 1.21690 1.27752 1.95626 1.22028 0.92267 0.84133 1.00939 1.21428 0.94897 0.93448 1.07238 1.20896 0.82284 0.91742 0.74931 1.90645 1.61769 1.42420 1.52302 1.45862 1.06332 1.09155 1.73095 1.19721 0.95650 0.83814 0.91378 0.92446 1.19137 0.89824 0.96270 0.94779 1.21399 0.92662 1.46602 0.96094 0.92778 1.25771 0.95013 0.95299 1.02634 1.70065 0.98306 1.50177 1.38058 0.85584 0.77559 0.78789 0.79921 1.19388 1.21016 1.19728 1.20448 0.98826 0.94871 0.95791 1.21091 0.99918 0.99862 0.93095 1.21451 0.99762 0.96705 0.96302 1.21477 0.99533 0.93605 1.00126 1.21386 0.99757 1.00937 0.92113 1.21176 1.00955 0.95199 0.97922 0.87656 0.93588 0.93284 0.93525 0.92967 0.85965 0.86792 0.75341 0.96842 0.97908 0.92717 0.85932 0.83532 0.83131 0.83912 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.92 10.70 -148.98 -1.59 -11.51 16 3 C 0.08 2.18 5.23 71.98 0.38 2.56 16 4 C -0.13 -3.35 6.07 29.85 0.18 -3.17 16 5 C 0.51 17.84 7.79 87.66 0.68 18.52 16 6 O -0.59 -24.83 15.64 -3.04 -0.05 -24.88 16 7 N -0.70 -25.05 4.04 -446.09 -1.80 -26.85 16 8 C 0.20 8.44 2.11 44.25 0.09 8.54 16 9 H 0.06 2.73 7.44 -2.39 -0.02 2.71 16 10 C 0.04 1.86 4.49 29.85 0.13 2.00 16 11 C -0.53 -28.57 8.84 25.60 0.23 -28.35 16 12 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 13 C 0.01 0.63 5.46 84.65 0.46 1.10 16 14 N -0.93 -53.89 13.29 21.45 0.28 -53.61 16 15 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.10 -3.73 4.91 -19.87 -0.10 -3.83 16 20 C -0.12 -3.99 9.32 22.27 0.21 -3.78 16 21 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 22 C -0.13 -3.29 10.05 22.27 0.22 -3.06 16 23 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 24 C -0.13 -4.78 9.67 22.27 0.22 -4.56 16 25 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 1.31 8.10 -2.38 -0.02 1.29 16 29 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 30 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 31 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.41 13.27 8.60 -92.71 -0.80 12.47 16 33 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.12 3.74 7.73 -2.91 -0.02 3.72 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.11 3.99 8.04 -2.91 -0.02 3.96 16 Total: -1.00 -68.44 344.80 3.49 -64.95 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.22 Total: 25.48 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.40 Total: -18.83 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.52 Total: -80.46 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.64 Total: -36.39 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.44 3.49 -64.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153626240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.444 kcal (2) G-P(sol) polarization free energy of solvation -68.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds