Wall clock time and date at job start Mon Mar 30 2020 02:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99849 * 2 1 4 4 C 1.53000 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47005 * 179.97438 * 4 3 2 6 6 O 1.21290 * 120.00067 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00181 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00556 * 180.02562 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.09002 * 109.46829 * 60.00440 * 1 2 3 26 26 H 1.09008 * 109.46440 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47628 * 300.00192 * 1 2 3 28 28 H 1.09003 * 109.47001 * 59.99744 * 3 2 1 29 29 H 1.09000 * 109.46834 * 299.99989 * 3 2 1 30 30 H 1.09003 * 109.46827 * 60.00297 * 4 3 2 31 31 H 1.08995 * 109.47370 * 300.00303 * 4 3 2 32 32 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 34 34 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 36 36 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 37 37 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 38 38 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 39 39 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1483 2.5615 0.0000 6 8 3.4353 3.5427 -0.0004 7 7 5.4886 2.7025 -0.0001 8 6 6.0845 4.0408 -0.0002 9 1 5.4631 4.7151 -0.5896 10 6 7.4861 3.9750 -0.6099 11 6 7.3846 3.5837 -2.0617 12 1 6.4170 3.4007 -2.5052 13 6 8.5265 3.4655 -2.8254 14 7 9.7047 3.6888 -2.2853 15 14 8.4000 2.9879 -4.6268 16 1 8.2715 4.2132 -5.4559 17 1 9.6210 2.2443 -5.0286 18 1 7.2072 2.1267 -4.8281 19 6 6.1758 4.5502 1.4152 20 6 6.5365 3.6916 2.4367 21 6 6.6245 4.1598 3.7344 22 6 6.3428 5.4845 4.0119 23 6 5.9770 6.3417 2.9910 24 6 5.8933 5.8745 1.6928 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8574 0.6437 -0.8892 31 1 3.8567 0.6440 0.8908 32 1 6.0588 1.9177 0.0006 33 1 8.0808 3.2346 -0.0748 34 1 7.9636 4.9515 -0.5294 35 1 10.5081 3.6052 -2.8225 36 1 6.7525 2.6557 2.2206 37 1 6.9107 3.4901 4.5319 38 1 6.4090 5.8496 5.0261 39 1 5.7574 7.3767 3.2077 40 1 5.6075 6.5443 0.8952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153626343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:45 Heat of formation + Delta-G solvation = -74.286889 kcal Electronic energy + Delta-G solvation = -21208.551238 eV Core-core repulsion = 17987.711575 eV Total energy + Delta-G solvation = -3220.839663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71686 -38.57583 -37.66274 -35.22270 -32.76532 -31.95091 -30.74648 -30.41817 -28.78641 -26.69085 -25.03823 -23.36146 -22.29352 -21.94896 -20.18362 -19.68104 -17.22526 -16.82723 -16.22839 -16.17591 -15.71127 -15.43513 -14.95330 -14.80778 -14.51647 -14.44902 -13.91378 -13.20761 -13.02142 -12.97726 -12.57247 -12.46752 -12.12026 -11.98753 -11.53994 -11.36696 -11.18438 -11.13555 -10.93600 -10.74167 -10.61476 -10.47172 -9.79554 -9.71622 -9.45138 -9.28723 -8.55745 -8.47133 -8.43438 -8.19139 -6.10274 -4.13887 1.77208 1.79665 3.08430 3.27003 3.34088 3.35724 3.37089 4.09499 4.29218 4.39229 4.94448 5.09169 5.19015 5.24614 5.26368 5.26530 5.26776 5.35405 5.40822 5.52078 5.53204 5.65107 5.84448 5.90218 5.90590 5.93848 6.16888 6.35042 6.43166 6.57064 6.84079 6.84620 6.89736 7.07409 7.10307 7.39820 7.48074 7.60685 7.86279 8.09964 8.24607 8.72869 8.91959 9.51338 11.00243 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.006590 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.060702 B = 4247.788407 C = 6788.545716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.078 3.922 4 C -0.141 4.141 5 C 0.515 3.485 6 O -0.554 6.554 7 N -0.698 5.698 8 C 0.184 3.816 9 H 0.087 0.913 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.071 4.071 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.403 0.597 33 H 0.025 0.975 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.941 -3.557 9.115 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C 0.001 3.999 4 C -0.181 4.181 5 C 0.301 3.699 6 O -0.433 6.433 7 N -0.347 5.347 8 C 0.080 3.920 9 H 0.105 0.895 10 C -0.014 4.014 11 C -0.559 4.559 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.072 4.072 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.237 0.763 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.127 -3.019 9.057 14.661 hybrid contribution 0.233 -0.374 -1.008 1.100 sum -10.894 -3.393 8.049 13.963 Atomic orbital electron populations 1.22705 0.80986 1.02458 1.00107 1.87801 1.19761 1.28463 1.95561 1.22170 0.92309 0.83753 1.01632 1.21476 0.95029 0.96096 1.05499 1.20256 0.82940 0.90528 0.76197 1.90666 1.61148 1.40750 1.50767 1.45953 1.05763 1.09905 1.73074 1.20255 0.98562 0.82923 0.90307 0.89524 1.19393 0.87809 0.98639 0.95533 1.21133 0.92860 1.47183 0.94741 0.92394 1.24988 0.95375 0.95293 0.98458 1.69961 0.97616 1.49144 1.36325 0.86590 0.77502 0.78656 0.85249 1.20638 1.21237 1.19861 1.20549 0.96297 0.93843 0.96537 1.20916 0.99692 0.99648 0.92414 1.21048 1.00965 0.95754 0.96537 1.20999 1.01594 0.94061 0.98680 1.21042 1.00678 0.99285 0.93081 1.21017 0.99658 0.95480 0.96536 0.94040 0.89761 0.94104 0.92553 0.92395 0.88043 0.88420 0.76285 0.95687 0.94760 0.92851 0.86522 0.86715 0.86840 0.86612 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.40 -5.15 10.70 -35.23 -0.38 -5.53 16 3 C 0.08 1.06 5.23 37.16 0.19 1.25 16 4 C -0.14 -1.90 6.07 -27.88 -0.17 -2.07 16 5 C 0.52 8.91 7.79 -10.99 -0.09 8.82 16 6 O -0.55 -11.38 15.65 5.55 0.09 -11.29 16 7 N -0.70 -12.36 4.02 -54.93 -0.22 -12.58 16 8 C 0.18 3.71 2.12 -69.08 -0.15 3.56 16 9 H 0.09 1.92 7.44 -51.92 -0.39 1.53 16 10 C 0.02 0.56 4.50 -27.88 -0.13 0.43 16 11 C -0.52 -13.69 8.84 -34.44 -0.30 -13.99 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 15 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.07 -1.31 4.91 -104.63 -0.51 -1.83 16 20 C -0.11 -1.81 9.33 -39.58 -0.37 -2.18 16 21 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 22 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 24 C -0.11 -1.89 9.67 -39.59 -0.38 -2.27 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.40 6.48 8.60 -40.82 -0.35 6.13 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.12 1.81 7.71 -52.49 -0.40 1.40 16 37 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.12 2.00 8.04 -52.48 -0.42 1.58 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -31.17 344.77 -7.85 -39.02 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.17 Total: 6.07 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.08 Total: -12.09 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.52 Total: -37.32 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.29 Total: -16.82 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.17 -7.85 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153626343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.267 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds