Wall clock time and date at job start Mon Mar 30 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99849 * 2 1 4 4 C 1.53000 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47005 * 179.97438 * 4 3 2 6 6 O 1.21290 * 120.00067 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00181 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00556 * 180.02562 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.09002 * 109.46829 * 60.00440 * 1 2 3 26 26 H 1.09008 * 109.46440 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47628 * 300.00192 * 1 2 3 28 28 H 1.09003 * 109.47001 * 59.99744 * 3 2 1 29 29 H 1.09000 * 109.46834 * 299.99989 * 3 2 1 30 30 H 1.09003 * 109.46827 * 60.00297 * 4 3 2 31 31 H 1.08995 * 109.47370 * 300.00303 * 4 3 2 32 32 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 34 34 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 36 36 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 37 37 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 38 38 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 39 39 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1483 2.5615 0.0000 6 8 3.4353 3.5427 -0.0004 7 7 5.4886 2.7025 -0.0001 8 6 6.0845 4.0408 -0.0002 9 1 5.4631 4.7151 -0.5896 10 6 7.4861 3.9750 -0.6099 11 6 7.3846 3.5837 -2.0617 12 1 6.4170 3.4007 -2.5052 13 6 8.5265 3.4655 -2.8254 14 7 9.7047 3.6888 -2.2853 15 14 8.4000 2.9879 -4.6268 16 1 8.2715 4.2132 -5.4559 17 1 9.6210 2.2443 -5.0286 18 1 7.2072 2.1267 -4.8281 19 6 6.1758 4.5502 1.4152 20 6 6.5365 3.6916 2.4367 21 6 6.6245 4.1598 3.7344 22 6 6.3428 5.4845 4.0119 23 6 5.9770 6.3417 2.9910 24 6 5.8933 5.8745 1.6928 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8574 0.6437 -0.8892 31 1 3.8567 0.6440 0.8908 32 1 6.0588 1.9177 0.0006 33 1 8.0808 3.2346 -0.0748 34 1 7.9636 4.9515 -0.5294 35 1 10.5081 3.6052 -2.8225 36 1 6.7525 2.6557 2.2206 37 1 6.9107 3.4901 4.5319 38 1 6.4090 5.8496 5.0261 39 1 5.7574 7.3767 3.2077 40 1 5.6075 6.5443 0.8952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153626343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:44 Heat of formation + Delta-G solvation = -93.348577 kcal Electronic energy + Delta-G solvation = -21209.377815 eV Core-core repulsion = 17987.711575 eV Total energy + Delta-G solvation = -3221.666240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12509 -39.82742 -38.68942 -36.80636 -34.72545 -33.25697 -31.98755 -31.64673 -30.51987 -27.61798 -26.68866 -24.60358 -23.77935 -23.32135 -21.60481 -21.10910 -18.72955 -18.31518 -17.71129 -17.30337 -17.02708 -16.76967 -16.32356 -16.21850 -15.84056 -15.64043 -15.20442 -14.61490 -14.42108 -14.19443 -14.16900 -13.77959 -13.68611 -13.46570 -12.91300 -12.81510 -12.62715 -12.46504 -12.37554 -12.14050 -12.13193 -11.87242 -11.59130 -11.32665 -10.91145 -10.67626 -10.57317 -9.98255 -9.75112 -9.51812 -8.20269 -6.30477 0.51422 0.56376 1.40055 1.41653 1.51638 1.70160 2.14331 2.40203 2.92608 3.07091 3.15686 3.78749 3.97420 4.03918 4.06134 4.18472 4.22059 4.32973 4.44512 4.52285 4.52720 4.57730 4.66064 4.76769 4.79027 4.81137 4.84804 4.85484 5.13168 5.20641 5.28472 5.43463 5.61133 5.61656 5.64728 5.78041 5.90854 6.14367 6.16162 6.20701 6.68925 6.82335 7.33141 7.38850 8.90477 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.006590 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.060702 B = 4247.788407 C = 6788.545716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.083 3.917 4 C -0.131 4.131 5 C 0.514 3.486 6 O -0.590 6.590 7 N -0.695 5.695 8 C 0.200 3.800 9 H 0.058 0.942 10 C 0.037 3.963 11 C -0.529 4.529 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.956 3.044 16 H -0.279 1.279 17 H -0.281 1.281 18 H -0.265 1.265 19 C -0.098 4.098 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.134 4.134 25 H 0.045 0.955 26 H 0.105 0.895 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.411 0.589 33 H 0.013 0.987 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 -4.672 10.319 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.006 3.994 4 C -0.170 4.170 5 C 0.302 3.698 6 O -0.471 6.471 7 N -0.344 5.344 8 C 0.094 3.906 9 H 0.076 0.924 10 C 0.000 4.000 11 C -0.567 4.567 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.205 1.205 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.153 4.153 25 H 0.064 0.936 26 H 0.123 0.877 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.247 0.753 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.881 -4.156 10.264 16.241 hybrid contribution 0.429 0.008 -1.310 1.378 sum -11.452 -4.148 8.954 15.117 Atomic orbital electron populations 1.22955 0.79233 1.04109 1.00767 1.87770 1.21694 1.27756 1.95627 1.22030 0.92260 0.84131 1.00943 1.21427 0.94907 0.93457 1.07224 1.20892 0.82287 0.91740 0.74930 1.90646 1.61762 1.42416 1.52311 1.45862 1.06326 1.09162 1.73089 1.19723 0.95642 0.83819 0.91378 0.92422 1.19137 0.89802 0.96263 0.94814 1.21405 0.92669 1.46703 0.95969 0.92758 1.25776 0.95028 0.95286 1.02658 1.70072 0.98296 1.50277 1.37959 0.85582 0.77814 0.78366 0.80084 1.20521 1.20646 1.18958 1.20446 0.98848 0.94863 0.95775 1.21091 0.99990 0.99814 0.93081 1.21452 0.99734 0.96721 0.96313 1.21475 0.99539 0.93605 1.00128 1.21383 0.99772 1.00928 0.92106 1.21174 1.00933 0.95237 0.97912 0.93597 0.87655 0.93270 0.92962 0.93515 0.86839 0.85946 0.75343 0.96844 0.97918 0.92726 0.85922 0.83533 0.83133 0.83913 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.93 10.70 -148.98 -1.59 -11.53 16 3 C 0.08 2.18 5.23 71.98 0.38 2.56 16 4 C -0.13 -3.36 6.07 29.85 0.18 -3.18 16 5 C 0.51 17.85 7.79 87.66 0.68 18.53 16 6 O -0.59 -24.82 15.65 -3.06 -0.05 -24.87 16 7 N -0.70 -25.06 4.02 -446.09 -1.79 -26.86 16 8 C 0.20 8.44 2.12 44.24 0.09 8.53 16 9 H 0.06 2.73 7.44 -2.38 -0.02 2.72 16 10 C 0.04 1.86 4.50 29.85 0.13 1.99 16 11 C -0.53 -28.56 8.84 25.60 0.23 -28.33 16 12 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 13 C 0.01 0.62 5.46 84.66 0.46 1.08 16 14 N -0.93 -53.92 13.29 21.45 0.28 -53.63 16 15 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 C -0.10 -3.73 4.91 -19.87 -0.10 -3.83 16 20 C -0.12 -3.99 9.33 22.27 0.21 -3.78 16 21 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 22 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 23 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 24 C -0.13 -4.77 9.67 22.27 0.22 -4.56 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 1.39 8.10 -2.39 -0.02 1.38 16 29 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 30 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.41 13.29 8.60 -92.71 -0.80 12.49 16 33 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 36 H 0.12 3.74 7.71 -2.91 -0.02 3.72 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.11 3.99 8.04 -2.91 -0.02 3.96 16 Total: -1.00 -68.41 344.77 3.50 -64.91 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.22 Total: 25.54 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.40 Total: -18.83 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.51 Total: -80.49 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.64 Total: -36.40 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.41 3.50 -64.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153626343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.435 kcal (2) G-P(sol) polarization free energy of solvation -68.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds