Wall clock time and date at job start Mon Mar 30 2020 01:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46807 * 2 1 4 4 C 1.42899 * 113.99607 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46876 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 10 10 C 1.52999 * 109.47481 * 154.99940 * 8 7 5 11 11 C 1.50698 * 109.47141 * 295.00678 * 10 8 7 12 12 H 1.07994 * 120.00042 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99710 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00499 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46891 * 59.99966 * 15 13 11 17 17 H 1.48496 * 109.47132 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46996 * 300.00451 * 15 13 11 19 19 C 1.50700 * 109.47514 * 275.00337 * 8 7 5 20 20 C 1.38235 * 119.99909 * 319.72923 * 19 8 7 21 21 C 1.38235 * 120.00203 * 179.78500 * 20 19 8 22 22 C 1.38243 * 119.99736 * 0.43880 * 21 20 19 23 23 C 1.38244 * 119.99802 * 359.81374 * 22 21 20 24 24 C 1.38234 * 120.00041 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46672 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46948 * 299.99486 * 1 2 3 27 27 H 1.08993 * 109.46974 * 59.99940 * 1 2 3 28 28 H 1.09003 * 109.47244 * 240.00176 * 2 1 3 29 29 H 1.09001 * 109.46822 * 119.99778 * 2 1 3 30 30 H 1.09004 * 109.47206 * 60.00168 * 4 3 2 31 31 H 1.08994 * 109.47548 * 299.99825 * 4 3 2 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.09006 * 109.46798 * 55.00299 * 10 8 7 34 34 H 1.08995 * 109.47322 * 174.99759 * 10 8 7 35 35 H 0.96993 * 120.00753 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99755 * 359.97438 * 20 19 8 37 37 H 1.07999 * 120.00430 * 180.26737 * 21 20 19 38 38 H 1.07994 * 120.00105 * 179.82908 * 22 21 20 39 39 H 1.07997 * 119.99648 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.99956 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 8 2.9609 3.7730 -0.0005 7 7 5.1209 3.2664 0.0059 8 6 5.4986 4.6818 0.0113 9 1 4.7767 5.2482 0.5996 10 6 6.8909 4.8358 0.6268 11 6 6.8467 4.4293 2.0772 12 1 5.9184 4.0950 2.5163 13 6 7.9915 4.4843 2.8437 14 7 9.1219 4.8919 2.3092 15 14 7.9366 3.9811 4.6419 16 1 7.5024 2.5649 4.7465 17 1 9.2880 4.1305 5.2391 18 1 6.9757 4.8485 5.3695 19 6 5.5139 5.2031 -1.4025 20 6 6.0195 4.4193 -2.4228 21 6 6.0295 4.8957 -3.7204 22 6 5.5422 6.1596 -3.9964 23 6 5.0414 6.9455 -2.9753 24 6 5.0274 6.4673 -1.6784 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8333 0.9768 0.8907 32 1 5.8075 2.5812 0.0065 33 1 7.5966 4.1997 0.0925 34 1 7.2090 5.8755 0.5502 35 1 9.9271 4.9309 2.8484 36 1 6.4039 3.4334 -2.2065 37 1 6.4205 4.2817 -4.5182 38 1 5.5525 6.5330 -5.0097 39 1 4.6603 7.9328 -3.1910 40 1 4.6358 7.0811 -0.8807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153666835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:22 Heat of formation + Delta-G solvation = -70.394864 kcal Electronic energy + Delta-G solvation = -21238.018890 eV Core-core repulsion = 18017.347998 eV Total energy + Delta-G solvation = -3220.670892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67405 -38.59605 -37.41853 -35.11737 -32.75363 -31.70717 -31.05970 -30.45027 -28.91587 -27.25434 -24.71426 -22.85154 -22.29222 -21.95090 -20.51942 -19.70330 -17.09044 -16.87797 -16.40438 -16.26565 -16.14099 -15.31169 -14.87273 -14.54725 -14.36124 -14.23894 -13.54528 -13.20691 -12.96965 -12.73678 -12.56668 -12.47285 -12.43340 -12.10550 -11.57702 -11.43915 -11.27679 -11.13876 -10.92461 -10.72201 -10.63239 -10.45071 -9.78742 -9.68700 -9.37064 -9.24777 -8.54151 -8.46278 -8.42047 -8.17341 -6.10091 -4.13793 1.78933 1.81699 3.09279 3.18611 3.27642 3.33066 3.36085 4.15221 4.32165 4.39260 4.92858 5.00533 5.19724 5.23106 5.25390 5.26422 5.28352 5.29721 5.34802 5.40357 5.54183 5.56531 5.79875 5.91752 5.95231 6.00888 6.17509 6.36566 6.44384 6.58198 6.85447 6.86554 6.89768 7.06128 7.14018 7.41732 7.48215 7.62390 7.86435 8.11567 8.24944 8.77053 8.91972 9.51311 11.00361 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.006682 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.337695 B = 4189.479842 C = 6704.709689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.044 3.956 5 C 0.511 3.489 6 O -0.530 6.530 7 N -0.700 5.700 8 C 0.186 3.814 9 H 0.087 0.913 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.072 4.072 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.108 4.108 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.025 0.975 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 -7.231 -9.141 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.282 6.282 4 C -0.036 4.036 5 C 0.295 3.705 6 O -0.406 6.406 7 N -0.351 5.351 8 C 0.082 3.918 9 H 0.105 0.895 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.126 4.126 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.246 -6.415 -9.082 14.461 hybrid contribution 0.718 -0.869 1.005 1.510 sum -8.528 -7.283 -8.077 13.821 Atomic orbital electron populations 1.21721 0.93642 1.01967 1.03415 1.22519 0.95813 0.83842 1.00038 1.88025 1.18980 1.25833 1.95403 1.22234 0.83391 0.95666 1.02309 1.20110 0.83286 0.90010 0.77081 1.90685 1.49497 1.51652 1.48755 1.45860 1.06098 1.09205 1.73925 1.20248 1.01120 0.80053 0.90362 0.89473 1.19391 0.87841 0.98625 0.95447 1.21102 0.95255 1.44744 0.94886 0.92421 1.24983 0.95483 0.95186 0.98420 1.69944 0.99830 1.46812 1.36486 0.86653 0.77075 0.79107 0.85147 1.20285 1.21300 1.20186 1.20553 0.95865 0.94317 0.96548 1.20901 0.99510 0.99814 0.92433 1.21039 1.00647 0.96154 0.96501 1.20999 1.00687 0.94944 0.98678 1.21046 1.00408 0.99520 0.93077 1.21026 0.99259 0.95753 0.96582 0.91194 0.91703 0.91787 0.93409 0.93279 0.90733 0.90293 0.76465 0.95684 0.94682 0.92790 0.86573 0.86740 0.86838 0.86586 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.59 6.66 37.16 0.25 0.84 16 3 O -0.36 -5.65 9.88 -55.14 -0.54 -6.20 16 4 C 0.04 0.62 6.42 36.01 0.23 0.85 16 5 C 0.51 9.40 7.86 -10.98 -0.09 9.31 16 6 O -0.53 -11.99 16.16 -14.35 -0.23 -12.23 16 7 N -0.70 -12.60 4.04 -54.93 -0.22 -12.82 16 8 C 0.19 3.82 2.11 -69.08 -0.15 3.67 16 9 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 10 C 0.02 0.58 4.49 -27.88 -0.13 0.45 16 11 C -0.52 -13.72 8.84 -34.44 -0.30 -14.02 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.07 -1.35 4.91 -104.62 -0.51 -1.86 16 20 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 21 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 22 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16 23 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 24 C -0.11 -1.91 9.67 -39.58 -0.38 -2.30 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 6.39 8.60 -40.82 -0.35 6.04 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.12 1.80 7.73 -52.48 -0.41 1.40 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.12 2.06 8.04 -52.49 -0.42 1.63 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -32.49 345.70 -8.61 -41.10 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.18 Total: 5.34 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.36 Total: -11.63 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.51 Total: -37.50 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.78 Total: -18.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.49 -8.61 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153666835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.291 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds