Wall clock time and date at job start Mon Mar 30 2020 01:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46807 * 2 1 4 4 C 1.42899 * 113.99607 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46876 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 10 10 C 1.52999 * 109.47481 * 154.99940 * 8 7 5 11 11 C 1.50698 * 109.47141 * 295.00678 * 10 8 7 12 12 H 1.07994 * 120.00042 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99710 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00499 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46891 * 59.99966 * 15 13 11 17 17 H 1.48496 * 109.47132 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46996 * 300.00451 * 15 13 11 19 19 C 1.50700 * 109.47514 * 275.00337 * 8 7 5 20 20 C 1.38235 * 119.99909 * 319.72923 * 19 8 7 21 21 C 1.38235 * 120.00203 * 179.78500 * 20 19 8 22 22 C 1.38243 * 119.99736 * 0.43880 * 21 20 19 23 23 C 1.38244 * 119.99802 * 359.81374 * 22 21 20 24 24 C 1.38234 * 120.00041 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46672 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46948 * 299.99486 * 1 2 3 27 27 H 1.08993 * 109.46974 * 59.99940 * 1 2 3 28 28 H 1.09003 * 109.47244 * 240.00176 * 2 1 3 29 29 H 1.09001 * 109.46822 * 119.99778 * 2 1 3 30 30 H 1.09004 * 109.47206 * 60.00168 * 4 3 2 31 31 H 1.08994 * 109.47548 * 299.99825 * 4 3 2 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.09006 * 109.46798 * 55.00299 * 10 8 7 34 34 H 1.08995 * 109.47322 * 174.99759 * 10 8 7 35 35 H 0.96993 * 120.00753 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99755 * 359.97438 * 20 19 8 37 37 H 1.07999 * 120.00430 * 180.26737 * 21 20 19 38 38 H 1.07994 * 120.00105 * 179.82908 * 22 21 20 39 39 H 1.07997 * 119.99648 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.99956 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 8 2.9609 3.7730 -0.0005 7 7 5.1209 3.2664 0.0059 8 6 5.4986 4.6818 0.0113 9 1 4.7767 5.2482 0.5996 10 6 6.8909 4.8358 0.6268 11 6 6.8467 4.4293 2.0772 12 1 5.9184 4.0950 2.5163 13 6 7.9915 4.4843 2.8437 14 7 9.1219 4.8919 2.3092 15 14 7.9366 3.9811 4.6419 16 1 7.5024 2.5649 4.7465 17 1 9.2880 4.1305 5.2391 18 1 6.9757 4.8485 5.3695 19 6 5.5139 5.2031 -1.4025 20 6 6.0195 4.4193 -2.4228 21 6 6.0295 4.8957 -3.7204 22 6 5.5422 6.1596 -3.9964 23 6 5.0414 6.9455 -2.9753 24 6 5.0274 6.4673 -1.6784 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8333 0.9768 0.8907 32 1 5.8075 2.5812 0.0065 33 1 7.5966 4.1997 0.0925 34 1 7.2090 5.8755 0.5502 35 1 9.9271 4.9309 2.8484 36 1 6.4039 3.4334 -2.2065 37 1 6.4205 4.2817 -4.5182 38 1 5.5525 6.5330 -5.0097 39 1 4.6603 7.9328 -3.1910 40 1 4.6358 7.0811 -0.8807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153666835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:21 Heat of formation + Delta-G solvation = -89.869139 kcal Electronic energy + Delta-G solvation = -21238.863358 eV Core-core repulsion = 18017.347998 eV Total energy + Delta-G solvation = -3221.515360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10827 -39.85614 -38.56592 -36.74660 -34.73211 -32.92242 -32.17037 -31.69488 -30.58024 -28.56902 -26.44523 -23.80148 -23.66469 -23.38172 -21.97402 -21.18855 -18.74158 -18.13275 -17.93311 -17.53295 -17.29726 -16.72775 -16.45626 -16.17520 -15.54931 -15.52369 -14.93082 -14.53502 -14.24426 -14.18884 -13.83757 -13.80796 -13.68431 -13.47307 -13.20902 -12.91679 -12.65201 -12.45678 -12.30862 -12.15776 -12.14301 -11.87619 -11.59658 -11.34736 -10.82261 -10.64896 -10.56013 -10.00648 -9.75440 -9.52211 -8.19990 -6.30480 0.50848 0.56117 1.40343 1.42652 1.50284 1.66850 1.96170 2.40291 2.93987 3.10869 3.17174 3.81719 3.99583 4.03595 4.17221 4.19359 4.21776 4.31806 4.34068 4.36923 4.45333 4.51359 4.65227 4.75913 4.78634 4.83860 5.03742 5.12442 5.20228 5.26546 5.27177 5.42688 5.59934 5.61119 5.64208 5.77711 5.89001 6.14638 6.16449 6.20731 6.69949 6.81856 7.33976 7.38771 8.90467 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.006682 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.337695 B = 4189.479842 C = 6704.709689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.402 6.402 4 C 0.052 3.948 5 C 0.505 3.495 6 O -0.580 6.580 7 N -0.693 5.693 8 C 0.201 3.799 9 H 0.054 0.946 10 C 0.039 3.961 11 C -0.531 4.531 12 H 0.053 0.947 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.956 3.044 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.278 1.278 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.135 4.135 25 H 0.099 0.901 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.412 0.588 33 H 0.016 0.984 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.125 0.875 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 -9.078 -10.406 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.321 6.321 4 C -0.027 4.027 5 C 0.292 3.708 6 O -0.460 6.460 7 N -0.344 5.344 8 C 0.096 3.904 9 H 0.072 0.928 10 C 0.001 3.999 11 C -0.569 4.569 12 H 0.071 0.929 13 C -0.186 4.186 14 N -0.565 5.565 15 Si 0.781 3.219 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.203 1.203 19 C -0.101 4.101 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.154 4.154 25 H 0.117 0.883 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.248 0.752 33 H 0.034 0.966 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.382 -8.298 -10.350 16.248 hybrid contribution 0.739 -0.262 1.329 1.543 sum -8.643 -8.560 -9.022 15.145 Atomic orbital electron populations 1.21773 0.93089 1.03534 1.02353 1.22814 0.96356 0.82026 1.01738 1.87985 1.19533 1.28846 1.95773 1.22240 0.83440 0.92062 1.04996 1.20980 0.82425 0.91871 0.75537 1.90655 1.50689 1.53586 1.51059 1.45735 1.06761 1.08346 1.73548 1.19716 0.97839 0.81426 0.91419 0.92771 1.19129 0.89732 0.96235 0.94772 1.21365 0.95040 1.44426 0.96114 0.92880 1.25762 0.95097 0.95148 1.02603 1.70056 1.00454 1.47902 1.38097 0.85648 0.77053 0.79263 0.79953 1.18831 1.20846 1.20330 1.20455 0.98349 0.95411 0.95847 1.21098 0.99634 1.00135 0.93039 1.21462 0.99620 0.96774 0.96317 1.21485 0.98737 0.94417 1.00100 1.21385 0.99871 1.00873 0.92102 1.21181 1.00496 0.95769 0.97956 0.88273 0.92970 0.92667 0.91301 0.91822 0.87164 0.88061 0.75188 0.96567 0.97881 0.92681 0.85699 0.83361 0.83064 0.83945 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 0.91 6.66 71.98 0.48 1.39 16 3 O -0.40 -12.04 9.88 -129.94 -1.28 -13.33 16 4 C 0.05 1.37 6.42 71.24 0.46 1.83 16 5 C 0.50 18.77 7.86 87.66 0.69 19.46 16 6 O -0.58 -27.30 16.16 16.00 0.26 -27.04 16 7 N -0.69 -25.40 4.04 -446.09 -1.80 -27.20 16 8 C 0.20 8.69 2.11 44.25 0.09 8.78 16 9 H 0.05 2.66 7.44 -2.39 -0.02 2.64 16 10 C 0.04 1.94 4.49 29.85 0.13 2.07 16 11 C -0.53 -28.73 8.84 25.60 0.23 -28.50 16 12 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 13 C 0.01 0.70 5.46 84.65 0.46 1.16 16 14 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 15 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 16 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 C -0.10 -3.87 4.91 -19.87 -0.10 -3.96 16 20 C -0.12 -4.01 9.32 22.27 0.21 -3.80 16 21 C -0.12 -3.39 10.05 22.27 0.22 -3.16 16 22 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 23 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 24 C -0.14 -4.99 9.67 22.27 0.22 -4.77 16 25 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.41 13.07 8.60 -92.71 -0.80 12.27 16 33 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.13 3.77 7.73 -2.91 -0.02 3.75 16 37 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 39 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.11 4.09 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -73.11 345.70 3.98 -69.13 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.22 Total: 24.73 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 4.28 Total: -18.00 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.52 Total: -80.57 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.02 Total: -40.37 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.11 3.98 -69.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153666835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.741 kcal (2) G-P(sol) polarization free energy of solvation -73.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds