Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46863 * 2 1 4 4 C 1.42907 * 113.99985 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46874 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00208 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99469 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99717 * 175.03884 * 7 5 4 9 9 H 1.09001 * 109.47081 * 38.67413 * 8 7 5 10 10 C 1.53001 * 109.47016 * 278.67071 * 8 7 5 11 11 C 1.50701 * 109.46726 * 174.20469 * 10 8 7 12 12 H 1.08000 * 120.00052 * 354.86058 * 11 10 8 13 13 C 1.37877 * 119.99782 * 174.58567 * 11 10 8 14 14 N 1.31518 * 119.99836 * 0.27267 * 13 11 10 15 15 Si 1.86795 * 120.00105 * 180.27528 * 13 11 10 16 16 H 1.48496 * 109.47258 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47439 * 119.99670 * 15 13 11 18 18 H 1.48497 * 109.47215 * 239.99676 * 15 13 11 19 19 C 1.50700 * 109.46855 * 158.67031 * 8 7 5 20 20 C 1.38227 * 119.99988 * 39.72685 * 19 8 7 21 21 C 1.38237 * 119.99683 * 179.78655 * 20 19 8 22 22 C 1.38236 * 120.00247 * 0.44407 * 21 20 19 23 23 C 1.38236 * 119.99844 * 359.80810 * 22 21 20 24 24 C 1.38233 * 119.99580 * 220.00096 * 19 8 7 25 25 H 1.08992 * 109.47711 * 300.00088 * 1 2 3 26 26 H 1.09001 * 109.47022 * 60.00231 * 1 2 3 27 27 H 1.08994 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47294 * 240.00193 * 2 1 3 29 29 H 1.09001 * 109.47022 * 119.99769 * 2 1 3 30 30 H 1.08996 * 109.46549 * 60.00072 * 4 3 2 31 31 H 1.08998 * 109.46626 * 300.00196 * 4 3 2 32 32 H 0.96995 * 120.00341 * 355.03350 * 7 5 4 33 33 H 1.09001 * 109.47044 * 54.20777 * 10 8 7 34 34 H 1.08997 * 109.47226 * 294.20257 * 10 8 7 35 35 H 0.97005 * 119.99678 * 180.02562 * 14 13 11 36 36 H 1.07998 * 120.00026 * 359.97438 * 20 19 8 37 37 H 1.08003 * 119.99871 * 180.27742 * 21 20 19 38 38 H 1.08000 * 119.99817 * 179.83930 * 22 21 20 39 39 H 1.07996 * 119.99953 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00544 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8193 2.9163 0.0012 6 8 2.9609 3.7730 0.0006 7 7 5.1209 3.2664 0.0013 8 6 5.4998 4.6774 -0.1079 9 1 4.8046 5.2861 0.4702 10 6 5.4537 5.1057 -1.5760 11 6 5.7039 6.5885 -1.6747 12 1 5.7958 7.1816 -0.7768 13 6 5.8212 7.1870 -2.9112 14 7 5.7094 6.4648 -4.0046 15 14 6.1391 9.0237 -3.0335 16 1 6.2240 9.6033 -1.6690 17 1 7.4182 9.2581 -3.7507 18 1 5.0286 9.6697 -3.7782 19 6 6.8962 4.8652 0.4266 20 6 7.8704 3.9210 0.1619 21 6 9.1525 4.0956 0.6485 22 6 9.4580 5.2098 1.4075 23 6 8.4824 6.1514 1.6766 24 6 7.2014 5.9790 1.1863 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8339 0.9766 -0.8892 31 1 3.8332 0.9768 0.8908 32 1 5.8066 2.5843 0.0737 33 1 4.4728 4.8744 -1.9913 34 1 6.2206 4.5698 -2.1351 35 1 5.7923 6.8858 -4.8746 36 1 7.6307 3.0484 -0.4277 37 1 9.9148 3.3600 0.4379 38 1 10.4590 5.3448 1.7898 39 1 8.7212 7.0221 2.2692 40 1 6.4393 6.7147 1.3966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153666954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = -65.776144 kcal Electronic energy + Delta-G solvation = -21177.169155 eV Core-core repulsion = 17956.698545 eV Total energy + Delta-G solvation = -3220.470609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70084 -38.67070 -37.46027 -35.02432 -32.83065 -31.67963 -31.05641 -30.43862 -28.72738 -27.37585 -24.55621 -22.85791 -22.36347 -22.11699 -20.53615 -19.51595 -17.40110 -16.89911 -16.44422 -16.28984 -15.90595 -15.06949 -14.76930 -14.60846 -14.35834 -14.18539 -13.61246 -13.12840 -12.98560 -12.77922 -12.63910 -12.48766 -12.41279 -12.12935 -11.54137 -11.44893 -11.29144 -11.11828 -10.85632 -10.69094 -10.63424 -10.01536 -9.92791 -9.70958 -9.42769 -9.05698 -8.52942 -8.47824 -8.33007 -8.03258 -5.97984 -3.99077 1.81226 1.84954 3.03861 3.15048 3.33954 3.41279 3.45092 4.13015 4.29693 4.50108 4.92228 4.95343 5.15306 5.18555 5.23719 5.24751 5.27874 5.29610 5.37208 5.40315 5.52021 5.54713 5.80555 5.91032 5.98926 6.02938 6.20035 6.38299 6.51001 6.73185 6.81723 6.85844 6.90084 7.05743 7.17050 7.43044 7.63816 7.70985 7.99395 8.02118 8.37726 8.71290 9.05035 9.63830 11.13889 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013150 B = 0.005234 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.750596 B = 5348.288129 C = 6952.327544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.045 3.955 5 C 0.510 3.490 6 O -0.514 6.514 7 N -0.724 5.724 8 C 0.183 3.817 9 H 0.086 0.914 10 C 0.024 3.976 11 C -0.510 4.510 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.046 4.046 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.098 4.098 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.391 0.609 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.259 0.741 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -12.784 10.454 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.281 6.281 4 C -0.035 4.035 5 C 0.295 3.705 6 O -0.388 6.388 7 N -0.377 5.377 8 C 0.080 3.920 9 H 0.104 0.896 10 C -0.014 4.014 11 C -0.549 4.549 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.718 3.282 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.047 4.047 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.116 4.116 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.225 0.775 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.847 -11.977 10.250 15.787 hybrid contribution 0.869 0.443 -0.379 1.047 sum 1.716 -11.534 9.871 15.278 Atomic orbital electron populations 1.21723 0.93568 1.01978 1.03551 1.22520 0.95919 0.83762 0.99961 1.88051 1.18782 1.25879 1.95368 1.22226 0.83664 0.95477 1.02116 1.20053 0.83033 0.90101 0.77353 1.90745 1.49220 1.51534 1.47304 1.46168 1.06439 1.09794 1.75287 1.20328 0.91020 0.79522 1.01130 0.89564 1.19439 0.97995 0.96749 0.87239 1.21086 1.48752 0.92721 0.92368 0.92327 1.24944 0.95370 0.97985 0.95842 1.69977 1.50447 1.35444 0.97503 0.86554 0.77716 0.85725 0.78169 1.19641 1.21113 1.21021 1.19888 0.95586 0.94411 0.94803 1.20830 0.93207 0.99546 1.00260 1.20973 0.96232 0.98033 0.98704 1.20983 0.98810 0.95255 1.00268 1.21046 0.93420 0.98871 1.00527 1.20985 0.96816 0.97049 0.96760 0.91744 0.91589 0.91189 0.93275 0.93444 0.90394 0.90815 0.77485 0.95690 0.95835 0.93106 0.86692 0.86714 0.86868 0.86599 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.58 6.66 37.16 0.25 0.83 16 3 O -0.36 -5.59 9.88 -55.14 -0.54 -6.14 16 4 C 0.05 0.61 6.42 36.01 0.23 0.84 16 5 C 0.51 9.40 7.77 -10.98 -0.09 9.31 16 6 O -0.51 -12.18 16.20 -14.35 -0.23 -12.41 16 7 N -0.72 -12.39 5.05 -54.93 -0.28 -12.67 16 8 C 0.18 3.80 2.19 -69.08 -0.15 3.65 16 9 H 0.09 1.96 7.49 -51.93 -0.39 1.57 16 10 C 0.02 0.61 4.68 -27.88 -0.13 0.48 16 11 C -0.51 -14.36 8.53 -34.44 -0.29 -14.65 16 12 H 0.06 1.59 6.79 -52.49 -0.36 1.24 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 15 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 C -0.05 -0.86 4.50 -104.63 -0.47 -1.33 16 20 C -0.12 -1.95 9.02 -39.59 -0.36 -2.30 16 21 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 22 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 24 C -0.10 -1.74 8.83 -39.58 -0.35 -2.09 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.39 5.22 6.87 -40.82 -0.28 4.94 16 33 H 0.02 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.12 1.65 6.95 -52.49 -0.36 1.29 16 37 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.12 2.15 7.84 -52.49 -0.41 1.74 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -35.15 341.37 -8.47 -43.62 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.01 Total: 3.25 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.27 Total: -11.42 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.46 Total: -39.10 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.78 Total: -18.55 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.15 -8.47 -43.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153666954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.154 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds