Wall clock time and date at job start Mon Mar 30 2020 01:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 119.99773 * 2 1 4 4 C 1.50703 * 109.47114 * 124.99522 * 3 2 1 5 5 C 1.38258 * 119.92169 * 90.00045 * 4 3 2 6 6 C 1.38243 * 120.14372 * 179.97438 * 5 4 3 7 7 C 1.50694 * 119.99739 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.47266 * 105.02186 * 7 6 5 9 9 C 1.46501 * 120.00082 * 269.99856 * 8 7 6 10 10 C 1.36935 * 120.00137 * 89.99848 * 8 7 6 11 11 H 1.08003 * 120.00403 * 22.74762 * 10 8 7 12 12 C 1.38811 * 120.00187 * 202.74757 * 10 8 7 13 13 N 1.31621 * 120.00278 * 11.07721 * 12 10 8 14 14 Si 1.86804 * 120.00142 * 191.07484 * 12 10 8 15 15 H 1.48495 * 109.47423 * 59.99946 * 14 12 10 16 16 H 1.48499 * 109.46995 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46829 * 299.99964 * 14 12 10 18 18 C 1.38560 * 119.99916 * 359.97438 * 6 5 4 19 19 O 1.35999 * 120.07166 * 179.97438 * 18 6 5 20 20 C 1.39156 * 119.85464 * 0.28068 * 18 6 5 21 21 O 1.35997 * 120.07065 * 179.72108 * 20 18 6 22 22 C 1.42901 * 116.99757 * 179.97438 * 21 20 18 23 23 C 1.38238 * 119.92942 * 269.97691 * 4 3 2 24 24 H 1.07996 * 119.99486 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00152 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00152 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47199 * 4.99935 * 3 2 1 28 28 H 1.09000 * 109.47176 * 244.99899 * 3 2 1 29 29 H 1.07999 * 119.92618 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.47173 * 225.02185 * 7 6 5 31 31 H 1.09002 * 109.47318 * 345.01853 * 7 6 5 32 32 H 1.08995 * 109.47291 * 94.27530 * 9 8 7 33 33 H 1.09006 * 109.46885 * 214.27159 * 9 8 7 34 34 H 1.09003 * 109.47006 * 334.27091 * 9 8 7 35 35 H 0.96999 * 120.00532 * 180.02562 * 13 12 10 36 36 H 0.96699 * 113.99772 * 90.00451 * 19 18 6 37 37 H 1.09002 * 109.47068 * 60.00554 * 22 21 20 38 38 H 1.08998 * 109.47008 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47224 * 300.00125 * 22 21 20 40 40 H 1.08004 * 119.99984 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3327 1.1640 5 6 4.3084 0.8546 1.0094 6 6 5.1901 0.8783 2.0739 7 6 6.5931 0.3557 1.9019 8 7 7.5272 1.4815 1.8228 9 6 7.8511 2.0747 0.5231 10 6 8.0976 1.9793 2.9639 11 1 8.1705 1.3600 3.8457 12 6 8.5822 3.2798 2.9872 13 7 8.3034 4.1039 1.9994 14 14 9.6299 3.8607 4.4205 15 1 10.8512 3.0212 4.5132 16 1 10.0179 5.2782 4.2075 17 1 8.8527 3.7447 5.6806 18 6 4.7838 1.3824 3.2989 19 8 5.6498 1.4059 4.3472 20 6 3.4858 1.8587 3.4559 21 8 3.0806 2.3492 4.6579 22 6 1.7347 2.8214 4.7455 23 6 2.6085 1.8365 2.3836 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 4.6266 0.4626 0.0547 30 1 6.8534 -0.2733 2.7531 31 1 6.6525 -0.2308 0.9850 32 1 7.1972 2.9272 0.3396 33 1 8.8893 2.4068 0.5239 34 1 7.7079 1.3315 -0.2613 35 1 8.6423 5.0126 2.0155 36 1 6.1709 2.2181 4.4088 37 1 1.0482 2.0068 4.5152 38 1 1.5422 3.1849 5.7549 39 1 1.5874 3.6332 4.0331 40 1 1.6017 2.2094 2.5017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164237892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:34 Heat of formation + Delta-G solvation = -15.174226 kcal Electronic energy + Delta-G solvation = -22036.750724 eV Core-core repulsion = 18818.474378 eV Total energy + Delta-G solvation = -3218.276345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.96982 -37.66405 -36.55706 -35.24197 -34.22632 -31.76519 -29.99570 -29.65704 -27.39607 -26.21402 -25.64294 -25.12725 -21.78347 -21.54242 -20.11569 -19.51870 -17.65622 -16.90605 -16.62317 -16.13783 -15.51523 -15.09401 -14.87436 -14.42969 -13.94212 -13.81326 -13.55249 -13.47700 -13.16468 -12.92068 -12.44086 -11.91612 -11.73485 -11.69417 -11.37458 -11.33592 -11.12136 -10.90626 -10.73273 -10.59144 -10.50688 -10.21959 -10.00955 -9.87663 -9.66997 -9.36328 -8.56916 -7.99090 -7.48480 -6.79492 -5.75570 -3.20970 1.77361 1.94109 2.30016 3.38027 3.44059 3.45492 3.63057 4.11419 4.49452 4.90212 5.05918 5.08258 5.18113 5.26515 5.30098 5.31989 5.41172 5.54299 5.63717 5.72618 5.73948 5.82754 5.94385 5.97299 6.02821 6.31232 6.50419 6.58104 6.63823 6.71490 6.75742 6.82457 6.95456 7.17310 7.30038 7.39100 7.74697 7.75615 7.81093 8.37404 8.67327 9.21061 9.83643 10.33922 11.28188 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.005817 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.985883 B = 4812.407274 C = 5691.325668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.051 4.051 4 C -0.063 4.063 5 C -0.135 4.135 6 C -0.070 4.070 7 C 0.186 3.814 8 N -0.592 5.592 9 C 0.164 3.836 10 C -0.254 4.254 11 H 0.076 0.924 12 C 0.001 3.999 13 N -0.904 5.904 14 Si 0.902 3.098 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.280 1.280 18 C 0.109 3.891 19 O -0.489 6.489 20 C 0.089 3.911 21 O -0.310 6.310 22 C 0.029 3.971 23 C -0.203 4.203 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.045 0.955 34 H -0.003 1.003 35 H 0.253 0.747 36 H 0.398 0.602 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.569 -4.741 -2.094 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.152 4.152 3 C -0.088 4.088 4 C -0.064 4.064 5 C -0.154 4.154 6 C -0.075 4.075 7 C 0.059 3.941 8 N -0.313 5.313 9 C 0.019 3.981 10 C -0.384 4.384 11 H 0.094 0.906 12 C -0.198 4.198 13 N -0.549 5.549 14 Si 0.732 3.268 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.206 1.206 18 C 0.062 3.938 19 O -0.302 6.302 20 C 0.044 3.956 21 O -0.223 6.223 22 C -0.066 4.066 23 C -0.223 4.223 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.015 0.985 35 H 0.064 0.936 36 H 0.258 0.742 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.561 -5.072 -1.831 14.593 hybrid contribution 0.345 1.206 0.547 1.368 sum -13.215 -3.866 -1.285 13.829 Atomic orbital electron populations 1.23777 0.95852 1.01551 1.03098 1.22943 0.95777 0.98423 0.98076 1.19711 0.96923 0.95404 0.96811 1.19316 0.94353 0.98893 0.93793 1.20667 0.92651 1.03541 0.98569 1.21343 0.98096 0.97293 0.90729 1.19882 0.83981 0.90740 0.99524 1.44044 1.46363 1.36762 1.04123 1.20820 1.00118 0.93780 0.83375 1.19304 1.32189 0.94694 0.92201 0.90589 1.25102 1.01015 0.95766 0.97911 1.70065 1.46969 1.05517 1.32307 0.86376 0.80804 0.77530 0.82137 1.20980 1.21742 1.20637 1.17518 0.86636 1.01345 0.88271 1.84646 1.54526 1.45280 1.45747 1.19493 0.94404 0.96764 0.84923 1.86153 1.29730 1.76464 1.29983 1.22955 0.82298 0.98497 1.02881 1.20709 0.99396 1.08961 0.93184 0.88686 0.88811 0.87234 0.91047 0.89940 0.86428 0.92053 0.93333 0.95372 0.93585 0.98479 0.93635 0.74235 0.93216 0.88815 0.93146 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.04 14.32 29.01 0.42 -1.62 16 2 C -0.13 -1.52 9.50 -36.03 -0.34 -1.86 16 3 C -0.05 -0.64 5.78 -29.04 -0.17 -0.81 16 4 C -0.06 -1.02 5.12 -104.61 -0.54 -1.55 16 5 C -0.13 -2.39 9.31 -39.57 -0.37 -2.76 16 6 C -0.07 -1.44 5.47 -104.50 -0.57 -2.01 16 7 C 0.19 3.93 5.53 -5.20 -0.03 3.90 16 8 N -0.59 -14.57 2.91 -182.51 -0.53 -15.10 16 9 C 0.16 3.99 9.01 59.85 0.54 4.53 16 10 C -0.25 -6.66 7.17 -15.06 -0.11 -6.77 16 11 H 0.08 1.97 7.51 -52.48 -0.39 1.58 16 12 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 13 N -0.90 -25.63 10.59 55.49 0.59 -25.05 16 14 Si 0.90 21.30 29.57 -169.99 -5.03 16.28 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.11 2.33 6.67 -39.12 -0.26 2.07 16 19 O -0.49 -11.00 11.55 -34.24 -0.40 -11.40 16 20 C 0.09 1.73 6.70 -39.12 -0.26 1.47 16 21 O -0.31 -5.65 10.28 -34.23 -0.35 -6.00 16 22 C 0.03 0.37 9.81 101.05 0.99 1.36 16 23 C -0.20 -3.39 8.69 -39.46 -0.34 -3.73 16 24 H 0.09 0.82 8.06 -52.49 -0.42 0.40 16 25 H 0.09 0.85 7.84 -52.49 -0.41 0.44 16 26 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 27 H 0.07 0.82 7.74 -51.93 -0.40 0.42 16 28 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.12 1.86 8.00 -52.49 -0.42 1.44 16 30 H 0.06 1.31 7.89 -51.93 -0.41 0.90 16 31 H 0.05 0.91 7.67 -51.93 -0.40 0.52 16 32 H 0.03 0.75 7.41 -51.93 -0.38 0.36 16 33 H 0.05 1.20 7.21 -51.93 -0.37 0.83 16 34 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.40 9.16 7.31 45.56 0.33 9.49 16 37 H 0.05 0.55 7.67 -51.93 -0.40 0.16 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 40 H 0.12 1.67 6.30 -52.48 -0.33 1.34 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -29.89 333.14 -7.05 -36.93 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.22 Total: 7.17 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.13 Total: -7.86 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.06 Total: -40.14 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.75 Total: -17.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.89 -7.05 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164237892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.757 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds