Wall clock time and date at job start Mon Mar 30 2020 01:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 119.99773 * 2 1 4 4 C 1.50703 * 109.47114 * 124.99522 * 3 2 1 5 5 C 1.38258 * 119.92169 * 90.00045 * 4 3 2 6 6 C 1.38243 * 120.14372 * 179.97438 * 5 4 3 7 7 C 1.50694 * 119.99739 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.47266 * 105.02186 * 7 6 5 9 9 C 1.46501 * 120.00082 * 269.99856 * 8 7 6 10 10 C 1.36935 * 120.00137 * 89.99848 * 8 7 6 11 11 H 1.08003 * 120.00403 * 22.74762 * 10 8 7 12 12 C 1.38811 * 120.00187 * 202.74757 * 10 8 7 13 13 N 1.31621 * 120.00278 * 11.07721 * 12 10 8 14 14 Si 1.86804 * 120.00142 * 191.07484 * 12 10 8 15 15 H 1.48495 * 109.47423 * 59.99946 * 14 12 10 16 16 H 1.48499 * 109.46995 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46829 * 299.99964 * 14 12 10 18 18 C 1.38560 * 119.99916 * 359.97438 * 6 5 4 19 19 O 1.35999 * 120.07166 * 179.97438 * 18 6 5 20 20 C 1.39156 * 119.85464 * 0.28068 * 18 6 5 21 21 O 1.35997 * 120.07065 * 179.72108 * 20 18 6 22 22 C 1.42901 * 116.99757 * 179.97438 * 21 20 18 23 23 C 1.38238 * 119.92942 * 269.97691 * 4 3 2 24 24 H 1.07996 * 119.99486 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00152 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00152 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47199 * 4.99935 * 3 2 1 28 28 H 1.09000 * 109.47176 * 244.99899 * 3 2 1 29 29 H 1.07999 * 119.92618 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.47173 * 225.02185 * 7 6 5 31 31 H 1.09002 * 109.47318 * 345.01853 * 7 6 5 32 32 H 1.08995 * 109.47291 * 94.27530 * 9 8 7 33 33 H 1.09006 * 109.46885 * 214.27159 * 9 8 7 34 34 H 1.09003 * 109.47006 * 334.27091 * 9 8 7 35 35 H 0.96999 * 120.00532 * 180.02562 * 13 12 10 36 36 H 0.96699 * 113.99772 * 90.00451 * 19 18 6 37 37 H 1.09002 * 109.47068 * 60.00554 * 22 21 20 38 38 H 1.08998 * 109.47008 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47224 * 300.00125 * 22 21 20 40 40 H 1.08004 * 119.99984 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3327 1.1640 5 6 4.3084 0.8546 1.0094 6 6 5.1901 0.8783 2.0739 7 6 6.5931 0.3557 1.9019 8 7 7.5272 1.4815 1.8228 9 6 7.8511 2.0747 0.5231 10 6 8.0976 1.9793 2.9639 11 1 8.1705 1.3600 3.8457 12 6 8.5822 3.2798 2.9872 13 7 8.3034 4.1039 1.9994 14 14 9.6299 3.8607 4.4205 15 1 10.8512 3.0212 4.5132 16 1 10.0179 5.2782 4.2075 17 1 8.8527 3.7447 5.6806 18 6 4.7838 1.3824 3.2989 19 8 5.6498 1.4059 4.3472 20 6 3.4858 1.8587 3.4559 21 8 3.0806 2.3492 4.6579 22 6 1.7347 2.8214 4.7455 23 6 2.6085 1.8365 2.3836 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 4.6266 0.4626 0.0547 30 1 6.8534 -0.2733 2.7531 31 1 6.6525 -0.2308 0.9850 32 1 7.1972 2.9272 0.3396 33 1 8.8893 2.4068 0.5239 34 1 7.7079 1.3315 -0.2613 35 1 8.6423 5.0126 2.0155 36 1 6.1709 2.2181 4.4088 37 1 1.0482 2.0068 4.5152 38 1 1.5422 3.1849 5.7549 39 1 1.5874 3.6332 4.0331 40 1 1.6017 2.2094 2.5017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164237892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:34 Heat of formation + Delta-G solvation = -32.880253 kcal Electronic energy + Delta-G solvation = -22037.518515 eV Core-core repulsion = 18818.474378 eV Total energy + Delta-G solvation = -3219.044136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36619 -39.06109 -37.95605 -37.07441 -35.37598 -33.54513 -31.54284 -30.99607 -28.49110 -28.01059 -27.35783 -26.45778 -23.57102 -22.88694 -21.49379 -20.54164 -19.19646 -18.75141 -18.06227 -17.53616 -16.88371 -16.70679 -16.16517 -15.80592 -15.43951 -15.23902 -15.10200 -14.82772 -14.71027 -14.31271 -13.88626 -13.35304 -13.20001 -12.96585 -12.92356 -12.75896 -12.55959 -12.42361 -12.27423 -12.17501 -12.03788 -11.97846 -11.74082 -11.50928 -11.29815 -10.59073 -10.19858 -9.43892 -8.90642 -8.78135 -7.79949 -5.27166 0.36220 0.52268 1.47639 1.49227 1.50090 1.56452 2.40884 2.50936 2.71503 3.31920 3.60581 3.81993 3.87325 4.05326 4.17043 4.25931 4.30805 4.37298 4.41286 4.47190 4.50043 4.67665 4.71339 4.84963 4.88309 4.94367 4.97970 5.12644 5.14279 5.30850 5.37917 5.56059 5.67822 5.71365 5.74827 5.77476 5.91136 5.95934 6.35677 6.40914 6.99242 7.18201 7.88320 8.33335 9.22684 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.005817 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.985883 B = 4812.407274 C = 5691.325668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C -0.047 4.047 4 C -0.052 4.052 5 C -0.141 4.141 6 C -0.087 4.087 7 C 0.188 3.812 8 N -0.606 5.606 9 C 0.179 3.821 10 C -0.249 4.249 11 H 0.073 0.927 12 C -0.046 4.046 13 N -0.935 5.935 14 Si 0.959 3.041 15 H -0.281 1.281 16 H -0.298 1.298 17 H -0.274 1.274 18 C 0.062 3.938 19 O -0.499 6.499 20 C 0.082 3.918 21 O -0.337 6.337 22 C 0.019 3.981 23 C -0.200 4.200 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.001 0.999 33 H 0.020 0.980 34 H 0.031 0.969 35 H 0.246 0.754 36 H 0.386 0.614 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 -5.294 -2.721 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.173 4.173 3 C -0.084 4.084 4 C -0.053 4.053 5 C -0.160 4.160 6 C -0.091 4.091 7 C 0.062 3.938 8 N -0.328 5.328 9 C 0.034 3.966 10 C -0.379 4.379 11 H 0.091 0.909 12 C -0.242 4.242 13 N -0.582 5.582 14 Si 0.788 3.212 15 H -0.208 1.208 16 H -0.224 1.224 17 H -0.200 1.200 18 C 0.016 3.984 19 O -0.310 6.310 20 C 0.036 3.964 21 O -0.251 6.251 22 C -0.075 4.075 23 C -0.218 4.218 24 H 0.126 0.874 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.019 0.981 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.244 0.756 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.084 -5.669 -2.449 17.229 hybrid contribution 0.902 1.292 0.721 1.733 sum -15.182 -4.377 -1.728 15.895 Atomic orbital electron populations 1.24009 0.95392 1.02799 1.00375 1.22854 0.96291 0.97674 1.00518 1.19747 0.96553 0.96759 0.95344 1.19762 0.94263 0.96397 0.94833 1.20919 0.93153 1.03566 0.98402 1.21261 0.98186 0.98132 0.91507 1.19906 0.84081 0.89591 1.00259 1.44199 1.47724 1.37157 1.03685 1.20552 0.97813 0.93800 0.84391 1.19454 1.31362 0.94556 0.92497 0.90926 1.25687 1.02497 0.95970 1.00019 1.70225 1.48525 1.05389 1.34059 0.85461 0.79369 0.76449 0.79918 1.20756 1.22429 1.19974 1.17938 0.87668 1.04099 0.88660 1.84644 1.54956 1.44710 1.46734 1.19622 0.94108 0.96524 0.86114 1.86113 1.32752 1.76505 1.29715 1.23318 0.80024 0.99375 1.04796 1.21077 1.00278 1.08015 0.92468 0.87378 0.87654 0.87460 0.89505 0.89224 0.84567 0.93089 0.90871 0.98087 0.96142 0.95100 0.94428 0.75580 0.91457 0.86526 0.92112 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 14.32 67.77 0.97 -2.02 16 2 C -0.16 -2.99 9.50 25.64 0.24 -2.75 16 3 C -0.05 -1.02 5.78 29.10 0.17 -0.85 16 4 C -0.05 -1.55 5.12 -19.86 -0.10 -1.65 16 5 C -0.14 -4.81 9.31 22.28 0.21 -4.60 16 6 C -0.09 -3.57 5.47 -19.79 -0.11 -3.68 16 7 C 0.19 7.94 5.53 85.63 0.47 8.41 16 8 N -0.61 -30.23 2.91 -731.32 -2.13 -32.35 16 9 C 0.18 8.83 9.01 127.77 1.15 9.98 16 10 C -0.25 -13.32 7.17 84.03 0.60 -12.72 16 11 H 0.07 3.88 7.51 -2.91 -0.02 3.86 16 12 C -0.05 -2.55 5.13 84.86 0.44 -2.11 16 13 N -0.94 -54.60 10.59 21.65 0.23 -54.37 16 14 Si 0.96 44.88 29.57 68.60 2.03 46.91 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 C 0.06 2.72 6.67 22.57 0.15 2.87 16 19 O -0.50 -23.38 11.55 -79.67 -0.92 -24.30 16 20 C 0.08 3.12 6.70 22.57 0.15 3.28 16 21 O -0.34 -12.06 10.28 -79.65 -0.82 -12.88 16 22 C 0.02 0.44 9.81 113.37 1.11 1.55 16 23 C -0.20 -6.20 8.69 22.35 0.19 -6.00 16 24 H 0.11 1.44 8.06 -2.91 -0.02 1.41 16 25 H 0.11 1.43 7.84 -2.91 -0.02 1.41 16 26 H 0.11 2.10 8.06 -2.91 -0.02 2.08 16 27 H 0.09 1.62 7.74 -2.38 -0.02 1.60 16 28 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 29 H 0.14 4.02 8.00 -2.91 -0.02 4.00 16 30 H 0.05 2.23 7.89 -2.39 -0.02 2.21 16 31 H 0.07 2.67 7.67 -2.39 -0.02 2.65 16 32 H 0.00 0.04 7.41 -2.39 -0.02 0.03 16 33 H 0.02 1.07 7.21 -2.38 -0.02 1.06 16 34 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 35 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.39 18.80 7.31 -74.06 -0.54 18.26 16 37 H 0.07 1.29 7.67 -2.39 -0.02 1.27 16 38 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.26 7.65 -2.39 -0.02 1.24 16 40 H 0.15 3.63 6.30 -2.91 -0.02 3.61 16 Total: -1.00 -66.00 333.14 4.54 -61.47 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.49 Total: 25.82 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.65 Total: -10.30 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -1.90 Total: -86.72 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.74 Total: -37.18 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.00 4.54 -61.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164237892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.589 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds