Wall clock time and date at job start Mon Mar 30 2020 01:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46631 * 2 1 4 4 C 1.36001 * 116.99844 * 179.97438 * 3 2 1 5 5 C 1.38530 * 119.99998 * 359.97438 * 4 3 2 6 6 C 1.38472 * 120.33756 * 180.02562 * 5 4 3 7 7 C 1.37829 * 120.33368 * 359.78303 * 6 5 4 8 8 C 1.39770 * 119.99344 * 0.47288 * 7 6 5 9 9 C 1.47396 * 120.16173 * 179.78967 * 8 7 6 10 10 N 1.29422 * 119.99921 * 179.72276 * 9 8 7 11 11 C 1.46500 * 120.00143 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46998 * 114.99807 * 11 10 9 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46819 * 59.99744 * 18 16 14 20 20 H 1.48494 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47196 * 300.00241 * 18 16 14 22 22 C 1.39068 * 120.00354 * 179.97438 * 4 3 2 23 23 O 1.35799 * 120.16528 * 359.95881 * 22 4 3 24 24 H 1.08993 * 109.47316 * 60.00009 * 1 2 3 25 25 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47053 * 299.99845 * 1 2 3 27 27 H 1.09002 * 109.47053 * 240.00155 * 2 1 3 28 28 H 1.09002 * 109.46817 * 119.99691 * 2 1 3 29 29 H 1.07996 * 119.83104 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.83162 * 179.97438 * 6 5 4 31 31 H 1.07993 * 120.00024 * 180.23810 * 7 6 5 32 32 H 1.08001 * 120.00147 * 359.71760 * 9 8 7 33 33 H 1.08993 * 109.47452 * 354.99886 * 11 10 9 34 34 H 1.09000 * 109.47175 * 234.99676 * 11 10 9 35 35 H 1.09000 * 109.47050 * 299.99945 * 12 11 10 36 36 H 1.09001 * 109.46801 * 60.00058 * 12 11 10 37 37 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 38 38 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 39 39 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 40 40 H 0.96702 * 113.99861 * 270.01975 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1985 0.4271 0.0016 6 6 5.5723 0.6005 0.0027 7 6 6.1139 1.8679 -0.0018 8 6 5.2754 2.9861 0.0026 9 6 5.8506 4.3432 0.0025 10 7 5.0712 5.3764 0.0011 11 6 5.6429 6.7252 0.0016 12 6 5.2826 7.4324 -1.3065 13 6 5.8792 8.8412 -1.3057 14 6 5.5248 9.5376 -2.5944 15 1 4.9330 9.0265 -3.3393 16 6 5.9562 10.8271 -2.8225 17 7 6.6765 11.4496 -1.9152 18 14 5.5176 11.6899 -4.4201 19 1 4.0405 11.7782 -4.5456 20 1 6.0965 13.0574 -4.4193 21 1 6.0665 10.9202 -5.5653 22 6 3.8861 2.8107 0.0000 23 8 3.0620 3.8900 -0.0018 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7828 -0.5697 0.0016 30 1 6.2226 -0.2618 0.0039 31 1 7.1861 1.9969 -0.0048 32 1 6.9225 4.4753 0.0037 33 1 6.7271 6.6603 0.0928 34 1 5.2407 7.2900 0.8426 35 1 5.6848 6.8676 -2.1476 36 1 4.1983 7.4973 -1.3977 37 1 5.4766 9.4058 -0.4646 38 1 6.9634 8.7767 -1.2143 39 1 6.9798 12.3570 -2.0754 40 1 2.8240 4.2017 -0.8858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171417187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:11 Heat of formation + Delta-G solvation = -47.997558 kcal Electronic energy + Delta-G solvation = -20273.366834 eV Core-core repulsion = 17053.667162 eV Total energy + Delta-G solvation = -3219.699672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49985 -38.27756 -36.37964 -36.25351 -33.70868 -32.19245 -31.72507 -30.18668 -29.12061 -26.91765 -24.67281 -23.44817 -22.67223 -21.84063 -20.26269 -19.88016 -18.22159 -17.72478 -16.57524 -16.39619 -16.12711 -15.51208 -15.06423 -14.76472 -14.40273 -14.30781 -13.88911 -13.67444 -13.26335 -12.92148 -12.77605 -12.37497 -12.28187 -12.19508 -12.00899 -11.50382 -11.32580 -11.18561 -10.93181 -10.85098 -10.59103 -10.44783 -10.25654 -9.73307 -9.45392 -9.12598 -8.88787 -8.40169 -8.34304 -8.24042 -5.99442 -4.01942 0.73852 1.22533 2.59923 2.92802 3.34340 3.38321 3.41194 3.65143 4.19039 4.32800 4.47532 4.54485 4.59425 4.77785 4.87343 4.96597 5.02446 5.08517 5.25342 5.36166 5.38496 5.46564 5.57960 5.72034 5.74634 5.92467 6.00195 6.10232 6.18595 6.22286 6.31945 6.53293 6.66884 6.85042 7.09944 7.13401 7.66478 7.79964 7.94075 7.99701 8.07189 8.42911 9.04511 9.61959 11.11964 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.002842 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.609625 B = 9849.312188 C =10510.849581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.306 6.306 4 C 0.094 3.906 5 C -0.192 4.192 6 C -0.097 4.097 7 C -0.119 4.119 8 C -0.049 4.049 9 C 0.144 3.856 10 N -0.467 5.467 11 C 0.030 3.970 12 C -0.098 4.098 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.118 3.882 23 O -0.459 6.459 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.101 0.899 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.018 0.982 38 H 0.015 0.985 39 H 0.261 0.739 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 -26.752 4.552 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.220 6.220 4 C 0.048 3.952 5 C -0.212 4.212 6 C -0.115 4.115 7 C -0.140 4.140 8 C -0.050 4.050 9 C -0.067 4.067 10 N -0.175 5.175 11 C -0.099 4.099 12 C -0.136 4.136 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.069 3.931 23 O -0.268 6.268 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.417 -26.030 5.199 27.309 hybrid contribution 0.831 0.429 -1.315 1.614 sum -5.586 -25.601 3.884 26.489 Atomic orbital electron populations 1.21767 0.92706 1.02694 1.03761 1.22788 0.96001 0.82276 1.01152 1.86180 1.18359 1.28767 1.88653 1.19419 0.82943 0.93599 0.99229 1.21194 0.94318 0.97622 1.08040 1.20784 0.94096 0.97187 0.99479 1.21075 0.99766 0.91151 1.01991 1.19145 0.91555 0.92898 1.01408 1.23907 0.95556 0.90610 0.96619 1.71937 1.39056 1.00725 1.05736 1.22728 0.97295 0.88411 1.01467 1.21615 1.01168 0.98156 0.92664 1.19087 0.95919 0.89199 0.97313 1.21191 1.33224 0.98739 1.02719 0.92714 1.25027 0.95162 0.97492 0.96795 1.69953 1.36546 1.12789 1.34265 0.86634 0.78771 0.78602 0.83866 1.20182 1.21268 1.20257 1.17902 0.88292 0.84396 1.02477 1.84835 1.65268 1.43906 1.32828 0.91431 0.90480 0.91409 0.92168 0.92167 0.85353 0.85399 0.85012 0.88184 0.94219 0.89450 0.93601 0.92339 0.96383 0.96685 0.92925 0.75526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.64 9.92 -34.32 -0.34 -3.98 16 4 C 0.09 1.15 6.69 -39.17 -0.26 0.88 16 5 C -0.19 -1.84 9.03 -39.39 -0.36 -2.19 16 6 C -0.10 -0.85 10.02 -39.64 -0.40 -1.25 16 7 C -0.12 -1.20 9.78 -39.16 -0.38 -1.58 16 8 C -0.05 -0.63 5.88 -104.93 -0.62 -1.25 16 9 C 0.14 2.07 10.44 -14.84 -0.15 1.92 16 10 N -0.47 -8.02 8.35 -59.08 -0.49 -8.52 16 11 C 0.03 0.55 6.39 -4.04 -0.03 0.53 16 12 C -0.10 -2.13 5.48 -26.73 -0.15 -2.27 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.12 1.65 6.73 -38.60 -0.26 1.39 16 23 O -0.46 -7.04 11.16 -33.69 -0.38 -7.41 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.13 0.90 6.27 -52.49 -0.33 0.57 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.10 1.24 7.76 -52.49 -0.41 0.84 16 33 H 0.04 0.70 7.69 -51.93 -0.40 0.31 16 34 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.39 4.98 9.06 45.56 0.41 5.39 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -33.48 342.71 -8.18 -41.66 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.29 Total: -0.10 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -2.57 Total: -17.19 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.24 Total: -35.11 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.72 Total: -11.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.48 -8.18 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171417187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.338 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds