Wall clock time and date at job start Mon Mar 30 2020 01:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46631 * 2 1 4 4 C 1.36001 * 116.99844 * 179.97438 * 3 2 1 5 5 C 1.38530 * 119.99998 * 359.97438 * 4 3 2 6 6 C 1.38472 * 120.33756 * 180.02562 * 5 4 3 7 7 C 1.37829 * 120.33368 * 359.78303 * 6 5 4 8 8 C 1.39770 * 119.99344 * 0.47288 * 7 6 5 9 9 C 1.47396 * 120.16173 * 179.78967 * 8 7 6 10 10 N 1.29422 * 119.99921 * 179.72276 * 9 8 7 11 11 C 1.46500 * 120.00143 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46998 * 114.99807 * 11 10 9 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46819 * 59.99744 * 18 16 14 20 20 H 1.48494 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47196 * 300.00241 * 18 16 14 22 22 C 1.39068 * 120.00354 * 179.97438 * 4 3 2 23 23 O 1.35799 * 120.16528 * 359.95881 * 22 4 3 24 24 H 1.08993 * 109.47316 * 60.00009 * 1 2 3 25 25 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47053 * 299.99845 * 1 2 3 27 27 H 1.09002 * 109.47053 * 240.00155 * 2 1 3 28 28 H 1.09002 * 109.46817 * 119.99691 * 2 1 3 29 29 H 1.07996 * 119.83104 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.83162 * 179.97438 * 6 5 4 31 31 H 1.07993 * 120.00024 * 180.23810 * 7 6 5 32 32 H 1.08001 * 120.00147 * 359.71760 * 9 8 7 33 33 H 1.08993 * 109.47452 * 354.99886 * 11 10 9 34 34 H 1.09000 * 109.47175 * 234.99676 * 11 10 9 35 35 H 1.09000 * 109.47050 * 299.99945 * 12 11 10 36 36 H 1.09001 * 109.46801 * 60.00058 * 12 11 10 37 37 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 38 38 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 39 39 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 40 40 H 0.96702 * 113.99861 * 270.01975 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1985 0.4271 0.0016 6 6 5.5723 0.6005 0.0027 7 6 6.1139 1.8679 -0.0018 8 6 5.2754 2.9861 0.0026 9 6 5.8506 4.3432 0.0025 10 7 5.0712 5.3764 0.0011 11 6 5.6429 6.7252 0.0016 12 6 5.2826 7.4324 -1.3065 13 6 5.8792 8.8412 -1.3057 14 6 5.5248 9.5376 -2.5944 15 1 4.9330 9.0265 -3.3393 16 6 5.9562 10.8271 -2.8225 17 7 6.6765 11.4496 -1.9152 18 14 5.5176 11.6899 -4.4201 19 1 4.0405 11.7782 -4.5456 20 1 6.0965 13.0574 -4.4193 21 1 6.0665 10.9202 -5.5653 22 6 3.8861 2.8107 0.0000 23 8 3.0620 3.8900 -0.0018 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7828 -0.5697 0.0016 30 1 6.2226 -0.2618 0.0039 31 1 7.1861 1.9969 -0.0048 32 1 6.9225 4.4753 0.0037 33 1 6.7271 6.6603 0.0928 34 1 5.2407 7.2900 0.8426 35 1 5.6848 6.8676 -2.1476 36 1 4.1983 7.4973 -1.3977 37 1 5.4766 9.4058 -0.4646 38 1 6.9634 8.7767 -1.2143 39 1 6.9798 12.3570 -2.0754 40 1 2.8240 4.2017 -0.8858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171417187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:11 Heat of formation + Delta-G solvation = -70.118723 kcal Electronic energy + Delta-G solvation = -20274.326080 eV Core-core repulsion = 17053.667162 eV Total energy + Delta-G solvation = -3220.658918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33029 -39.16778 -37.62503 -37.31254 -35.61355 -33.63488 -32.66587 -31.39131 -29.93890 -28.63864 -25.95440 -24.63817 -23.62843 -22.91340 -21.94124 -21.01179 -19.16302 -18.62583 -18.47890 -17.32531 -17.09897 -16.57260 -16.41346 -16.28187 -15.81137 -15.31824 -15.04038 -14.61394 -14.51148 -14.15854 -13.99930 -13.53431 -13.37175 -13.16520 -13.01316 -12.86640 -12.74931 -12.68992 -12.46894 -12.05375 -11.90723 -11.69762 -11.54828 -11.44086 -11.37117 -11.08128 -10.58345 -10.12068 -9.43507 -9.06150 -8.22928 -6.34799 -0.18624 0.41424 1.38144 1.41837 1.49807 1.55784 2.22707 2.39086 2.78474 3.09775 3.12643 3.39236 3.82671 4.03326 4.05041 4.07531 4.17089 4.24873 4.32842 4.37865 4.41410 4.53287 4.58366 4.71406 4.83636 4.90565 4.93734 4.94508 5.10123 5.16020 5.21493 5.33202 5.36662 5.46009 5.51680 5.66404 5.76660 5.79599 6.20052 6.37847 6.79939 6.88368 6.97179 7.34360 8.88831 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.002842 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.609625 B = 9849.312188 C =10510.849581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.078 3.922 5 C -0.181 4.181 6 C -0.089 4.089 7 C -0.111 4.111 8 C -0.075 4.075 9 C 0.162 3.838 10 N -0.505 5.505 11 C 0.042 3.958 12 C -0.081 4.081 13 C 0.027 3.973 14 C -0.547 4.547 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.266 1.266 22 C 0.086 3.914 23 O -0.481 6.481 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.124 0.876 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.050 0.950 37 H -0.007 1.007 38 H -0.005 1.005 39 H 0.265 0.735 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 -29.659 3.687 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.032 3.968 5 C -0.201 4.201 6 C -0.107 4.107 7 C -0.131 4.131 8 C -0.077 4.077 9 C -0.047 4.047 10 N -0.213 5.213 11 C -0.087 4.087 12 C -0.119 4.119 13 C -0.011 4.011 14 C -0.585 4.585 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.190 1.190 22 C 0.038 3.962 23 O -0.291 6.291 24 H 0.077 0.923 25 H 0.122 0.878 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.176 0.824 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.141 0.859 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.011 0.989 38 H 0.014 0.986 39 H 0.074 0.926 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.886 -28.963 4.338 29.871 hybrid contribution 0.681 1.110 -1.003 1.644 sum -5.205 -27.852 3.335 28.530 Atomic orbital electron populations 1.21810 0.92047 1.04135 1.02815 1.23098 0.96631 0.80789 1.02520 1.86154 1.18472 1.31341 1.88794 1.19560 0.83595 0.93704 0.99941 1.21607 0.94586 0.98080 1.05782 1.21267 0.94212 0.97902 0.97322 1.21445 1.00835 0.90671 1.00177 1.19259 0.91682 0.92963 1.03753 1.24420 0.96642 0.90776 0.92908 1.72005 1.39284 1.00141 1.09877 1.22404 0.97528 0.89700 0.99078 1.21309 1.00125 0.95712 0.94771 1.18970 0.94700 0.91698 0.95697 1.21625 1.33587 0.99601 1.03685 0.92400 1.26005 0.94794 0.98274 1.00742 1.70085 1.37430 1.13278 1.36453 0.85465 0.78852 0.77412 0.79117 1.19258 1.20529 1.19035 1.18302 0.88823 0.84807 1.04272 1.84802 1.65958 1.45014 1.33358 0.92259 0.87792 0.92488 0.90538 0.90805 0.82448 0.81482 0.82290 0.85941 0.93587 0.90603 0.93534 0.93104 0.98854 0.98620 0.92618 0.75380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -0.99 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.33 -7.82 9.92 -79.62 -0.79 -8.61 16 4 C 0.08 1.82 6.69 22.54 0.15 1.97 16 5 C -0.18 -2.87 9.03 22.40 0.20 -2.67 16 6 C -0.09 -1.19 10.02 22.23 0.22 -0.96 16 7 C -0.11 -1.87 9.78 22.54 0.22 -1.65 16 8 C -0.08 -1.88 5.88 -20.06 -0.12 -1.99 16 9 C 0.16 4.59 10.44 87.46 0.91 5.50 16 10 N -0.51 -17.75 8.35 -340.84 -2.85 -20.60 16 11 C 0.04 1.62 6.39 86.38 0.55 2.17 16 12 C -0.08 -3.65 5.48 30.60 0.17 -3.49 16 13 C 0.03 1.49 4.97 29.85 0.15 1.64 16 14 C -0.55 -32.41 9.11 25.60 0.23 -32.17 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 17 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 18 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.09 2.42 6.73 22.90 0.15 2.57 16 23 O -0.48 -15.60 11.16 -77.36 -0.86 -16.46 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.77 7.66 -2.39 -0.02 0.76 16 28 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 29 H 0.16 1.51 6.27 -2.91 -0.02 1.50 16 30 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.12 2.83 7.76 -2.91 -0.02 2.80 16 33 H 0.05 1.66 7.69 -2.39 -0.02 1.65 16 34 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 40 H 0.39 10.99 9.06 -74.06 -0.67 10.32 16 Total: -1.00 -74.71 342.71 2.61 -72.10 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.36 Total: 12.58 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 4.44 Total: -28.63 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -2.56 Total: -78.26 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.65 Total: -25.07 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -74.71 2.61 -72.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171417187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.980 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds