Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00022 * 2 1 4 4 C 1.50697 * 109.47325 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.92540 * 270.01938 * 4 3 2 6 6 C 1.38344 * 120.29017 * 180.02562 * 5 4 3 7 7 C 1.37976 * 120.14770 * 359.69785 * 6 5 4 8 8 C 1.39565 * 119.84839 * 0.53554 * 7 6 5 9 9 C 1.47846 * 120.14297 * 179.76492 * 8 7 6 10 10 O 1.21553 * 120.00032 * 179.72296 * 9 8 7 11 11 N 1.34779 * 120.00003 * 359.72484 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 C 1.37939 * 119.92864 * 90.00039 * 4 3 2 24 24 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46926 * 299.99904 * 1 2 3 26 26 H 1.08998 * 109.47585 * 59.99935 * 1 2 3 27 27 H 1.08996 * 109.47010 * 60.00071 * 3 2 1 28 28 H 1.09006 * 109.47214 * 300.00378 * 3 2 1 29 29 H 1.07995 * 119.85777 * 0.02562 * 5 4 3 30 30 H 1.08005 * 119.92456 * 179.97438 * 6 5 4 31 31 H 1.07993 * 120.07780 * 180.27649 * 7 6 5 32 32 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 34 34 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 35 35 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 36 36 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 37 37 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 39 39 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.06939 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2011 1.1314 1.1984 6 6 5.5802 1.0228 1.2066 7 6 6.2777 0.9624 0.0176 8 6 5.5896 1.0224 -1.1951 9 6 6.3309 0.9634 -2.4730 10 8 5.7286 1.0109 -3.5278 11 7 7.6745 0.8571 -2.4684 12 6 8.4090 0.7993 -3.7346 13 6 9.9075 0.6799 -3.4499 14 6 10.6747 0.6202 -4.7723 15 6 12.1507 0.5033 -4.4920 16 1 12.5061 0.4749 -3.4725 17 6 13.0475 0.4325 -5.5369 18 7 12.6146 0.4666 -6.7783 19 14 14.8771 0.2869 -5.1893 20 1 15.1360 -0.9504 -4.4100 21 1 15.6217 0.2290 -6.4728 22 1 15.3281 1.4670 -4.4088 23 6 4.1980 1.1324 -1.1964 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 3.6596 1.1734 2.1318 30 1 6.1118 0.9806 2.1458 31 1 7.3539 0.8730 0.0254 32 1 8.1551 0.8196 -1.6267 33 1 8.2186 1.7072 -4.3070 34 1 8.0782 -0.0672 -4.3073 35 1 10.2386 1.5462 -2.8771 36 1 10.0975 -0.2281 -2.8778 37 1 10.3437 -0.2459 -5.3455 38 1 10.4846 1.5285 -5.3441 39 1 13.2455 0.4164 -7.5134 40 1 3.6594 1.1757 -2.1314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171505549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = -74.556331 kcal Electronic energy + Delta-G solvation = -19956.646340 eV Core-core repulsion = 16735.794994 eV Total energy + Delta-G solvation = -3220.851347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29693 -38.83838 -37.66992 -35.44743 -33.45150 -32.48452 -31.49831 -30.85722 -27.69728 -26.81793 -25.63047 -24.22600 -22.56596 -22.06764 -20.69965 -19.84599 -17.82144 -16.75871 -16.56920 -16.30613 -16.19337 -15.70742 -15.39456 -15.31089 -14.66115 -14.43884 -14.17964 -13.95116 -13.65082 -12.94755 -12.76555 -12.64461 -12.27223 -11.95086 -11.83043 -11.76506 -11.68104 -11.28634 -10.88679 -10.73075 -10.63120 -10.09753 -9.95872 -9.87083 -9.40037 -9.21176 -9.19356 -9.13378 -8.76276 -8.36969 -6.01674 -4.04927 0.65503 1.02848 2.77524 3.30626 3.32114 3.36973 3.39138 3.48328 3.86842 4.44041 4.45144 4.48930 4.61610 4.80858 4.84555 4.96141 4.97735 4.99644 5.11628 5.29919 5.30663 5.33914 5.51268 5.69939 5.73570 5.77136 6.07607 6.09599 6.15284 6.21287 6.45287 6.58652 6.58989 6.74210 6.82159 6.99226 7.63085 7.67522 7.75859 7.96828 8.33364 8.38664 9.01437 9.59129 11.09556 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043021 B = 0.002445 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.688596 B =11449.888618 C =11946.413928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.104 4.104 5 C -0.077 4.077 6 C -0.129 4.129 7 C -0.079 4.079 8 C -0.131 4.131 9 C 0.551 3.449 10 O -0.540 6.540 11 N -0.720 5.720 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.040 4.040 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.227 2.073 18.402 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.027 3.973 4 C -0.104 4.104 5 C -0.095 4.095 6 C -0.147 4.147 7 C -0.098 4.098 8 C -0.134 4.134 9 C 0.338 3.662 10 O -0.419 6.419 11 N -0.371 5.371 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.059 4.059 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.457 1.934 17.418 27.704 hybrid contribution 1.132 0.110 0.532 1.255 sum -20.325 2.045 17.949 27.193 Atomic orbital electron populations 1.22773 0.80840 1.02989 1.00040 1.87989 1.19725 1.27297 1.95413 1.21337 0.89509 0.85258 1.01184 1.19518 0.94280 1.03318 0.93275 1.21221 0.94363 0.96475 0.97487 1.21094 0.94131 1.01326 0.98171 1.21428 1.00131 0.96475 0.91781 1.20058 0.94360 1.05631 0.93347 1.18256 0.82438 0.76961 0.88594 1.90770 1.68417 1.50169 1.32509 1.46141 1.06246 1.73813 1.10859 1.21694 0.92653 1.02142 0.84163 1.21899 0.91008 1.00848 1.02171 1.19027 0.94177 0.97679 0.90490 1.21162 0.91645 1.50724 0.92618 0.92691 1.25037 0.99036 0.95301 0.95134 1.69959 1.34678 1.50331 0.98279 0.86630 0.85128 0.78618 0.77441 1.20242 1.21274 1.20256 1.21164 0.92767 0.93669 0.98275 0.89450 0.94035 0.93866 0.92212 0.92062 0.85567 0.85093 0.85229 0.76759 0.91554 0.91549 0.92687 0.92669 0.96229 0.96242 0.92862 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.83 10.69 -35.23 -0.38 -4.20 16 3 C 0.10 0.86 6.06 36.00 0.22 1.08 16 4 C -0.10 -1.05 5.50 -104.68 -0.58 -1.62 16 5 C -0.08 -0.67 9.69 -39.49 -0.38 -1.05 16 6 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 7 C -0.08 -0.80 9.54 -39.18 -0.37 -1.17 16 8 C -0.13 -1.68 5.87 -104.97 -0.62 -2.30 16 9 C 0.55 8.79 7.77 -12.33 -0.10 8.69 16 10 O -0.54 -10.61 16.35 5.32 0.09 -10.52 16 11 N -0.72 -10.74 5.51 -61.25 -0.34 -11.08 16 12 C 0.12 2.08 5.67 -4.04 -0.02 2.05 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C -0.04 -0.49 9.24 -39.19 -0.36 -0.85 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 31 H 0.13 1.04 6.40 -52.49 -0.34 0.71 16 32 H 0.40 4.73 6.51 -40.82 -0.27 4.47 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.14 1.73 7.65 -52.49 -0.40 1.33 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -33.74 344.07 -7.95 -41.69 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.03 Total: -0.61 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.19 Total: -10.81 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.40 Total: -37.22 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.29 Total: -14.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.74 -7.95 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.865 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds