Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00022 * 2 1 4 4 C 1.50697 * 109.47325 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.92540 * 270.01938 * 4 3 2 6 6 C 1.38344 * 120.29017 * 180.02562 * 5 4 3 7 7 C 1.37976 * 120.14770 * 359.69785 * 6 5 4 8 8 C 1.39565 * 119.84839 * 0.53554 * 7 6 5 9 9 C 1.47846 * 120.14297 * 179.76492 * 8 7 6 10 10 O 1.21553 * 120.00032 * 179.72296 * 9 8 7 11 11 N 1.34779 * 120.00003 * 359.72484 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 C 1.37939 * 119.92864 * 90.00039 * 4 3 2 24 24 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46926 * 299.99904 * 1 2 3 26 26 H 1.08998 * 109.47585 * 59.99935 * 1 2 3 27 27 H 1.08996 * 109.47010 * 60.00071 * 3 2 1 28 28 H 1.09006 * 109.47214 * 300.00378 * 3 2 1 29 29 H 1.07995 * 119.85777 * 0.02562 * 5 4 3 30 30 H 1.08005 * 119.92456 * 179.97438 * 6 5 4 31 31 H 1.07993 * 120.07780 * 180.27649 * 7 6 5 32 32 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 34 34 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 35 35 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 36 36 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 37 37 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 39 39 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.06939 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2011 1.1314 1.1984 6 6 5.5802 1.0228 1.2066 7 6 6.2777 0.9624 0.0176 8 6 5.5896 1.0224 -1.1951 9 6 6.3309 0.9634 -2.4730 10 8 5.7286 1.0109 -3.5278 11 7 7.6745 0.8571 -2.4684 12 6 8.4090 0.7993 -3.7346 13 6 9.9075 0.6799 -3.4499 14 6 10.6747 0.6202 -4.7723 15 6 12.1507 0.5033 -4.4920 16 1 12.5061 0.4749 -3.4725 17 6 13.0475 0.4325 -5.5369 18 7 12.6146 0.4666 -6.7783 19 14 14.8771 0.2869 -5.1893 20 1 15.1360 -0.9504 -4.4100 21 1 15.6217 0.2290 -6.4728 22 1 15.3281 1.4670 -4.4088 23 6 4.1980 1.1324 -1.1964 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 3.6596 1.1734 2.1318 30 1 6.1118 0.9806 2.1458 31 1 7.3539 0.8730 0.0254 32 1 8.1551 0.8196 -1.6267 33 1 8.2186 1.7072 -4.3070 34 1 8.0782 -0.0672 -4.3073 35 1 10.2386 1.5462 -2.8771 36 1 10.0975 -0.2281 -2.8778 37 1 10.3437 -0.2459 -5.3455 38 1 10.4846 1.5285 -5.3441 39 1 13.2455 0.4164 -7.5134 40 1 3.6594 1.1757 -2.1314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171505549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = -96.858599 kcal Electronic energy + Delta-G solvation = -19957.613439 eV Core-core repulsion = 16735.794994 eV Total energy + Delta-G solvation = -3221.818446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32875 -39.79773 -38.38615 -37.02443 -35.27523 -33.62402 -32.67614 -32.05266 -28.79273 -28.09794 -26.25155 -25.67181 -24.03098 -22.85245 -22.31692 -21.10284 -18.89243 -18.43275 -17.42368 -17.34236 -16.98504 -16.75053 -16.64529 -16.45370 -16.26344 -15.46060 -15.44106 -15.05834 -14.71822 -14.26585 -13.79222 -13.76821 -13.58640 -13.38100 -13.17491 -12.71656 -12.66077 -12.53807 -12.42752 -12.34727 -11.98098 -11.68758 -11.62099 -11.27897 -10.99035 -10.66664 -10.54803 -10.28952 -9.94980 -9.88830 -8.19255 -6.31015 -0.19733 0.26458 1.41980 1.45269 1.53102 1.76200 2.08511 2.42777 2.65923 3.14316 3.16391 3.62005 3.76795 3.88978 4.08077 4.12023 4.18617 4.22688 4.29774 4.39895 4.52242 4.53830 4.56990 4.61760 4.82115 4.87424 4.91856 4.94128 4.97141 5.15350 5.27783 5.36034 5.37224 5.47587 5.51264 5.69538 5.83608 5.86699 6.18793 6.21619 6.48469 6.86211 7.12668 7.38507 8.92678 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043021 B = 0.002445 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.688596 B =11449.888618 C =11946.413928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.101 3.899 4 C -0.111 4.111 5 C -0.069 4.069 6 C -0.123 4.123 7 C -0.078 4.078 8 C -0.154 4.154 9 C 0.549 3.451 10 O -0.589 6.589 11 N -0.707 5.707 12 C 0.129 3.871 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.541 4.541 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.059 4.059 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.415 0.585 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.070 0.930 37 H -0.009 1.009 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.789 2.168 22.212 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.026 3.974 4 C -0.111 4.111 5 C -0.087 4.087 6 C -0.140 4.140 7 C -0.096 4.096 8 C -0.157 4.157 9 C 0.338 3.662 10 O -0.471 6.471 11 N -0.359 5.359 12 C 0.005 3.995 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.079 4.079 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.176 0.824 30 H 0.185 0.815 31 H 0.168 0.832 32 H 0.253 0.747 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.018 2.031 21.281 29.979 hybrid contribution 0.895 0.082 -0.611 1.087 sum -20.123 2.113 20.669 28.924 Atomic orbital electron populations 1.22948 0.79230 1.03823 1.01151 1.87934 1.21613 1.28228 1.95655 1.21435 0.88477 0.85044 1.02490 1.19764 0.95382 1.02964 0.93021 1.21657 0.94790 0.94267 0.97965 1.21521 0.94206 0.99464 0.98814 1.21684 1.01219 0.95580 0.91151 1.19853 0.94437 1.08767 0.92674 1.18824 0.82421 0.75619 0.89365 1.90737 1.69316 1.52441 1.34566 1.45875 1.06077 1.73485 1.10469 1.21298 0.92082 1.00788 0.85358 1.21606 0.90949 1.02262 0.99105 1.18945 0.94534 0.95070 0.92916 1.21651 0.92779 1.50198 0.93300 0.91376 1.26059 1.04538 0.94852 0.94846 1.70115 1.36512 1.51516 0.99422 0.85441 0.78543 0.79295 0.77400 1.18978 1.21245 1.18950 1.21156 0.92851 0.95183 0.98664 0.88855 0.92184 0.93467 0.89516 0.92135 0.82442 0.81538 0.83219 0.74671 0.93019 0.93152 0.91085 0.91164 0.99012 0.98955 0.92826 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.78 10.69 -148.98 -1.59 -9.38 16 3 C 0.10 1.55 6.06 71.24 0.43 1.98 16 4 C -0.11 -2.09 5.50 -19.90 -0.11 -2.20 16 5 C -0.07 -0.95 9.69 22.33 0.22 -0.73 16 6 C -0.12 -1.59 10.03 22.23 0.22 -1.36 16 7 C -0.08 -1.37 9.54 22.53 0.21 -1.15 16 8 C -0.15 -3.93 5.87 -20.09 -0.12 -4.05 16 9 C 0.55 18.00 7.77 86.79 0.67 18.67 16 10 O -0.59 -24.56 16.35 -3.88 -0.06 -24.62 16 11 N -0.71 -20.93 5.51 -465.97 -2.57 -23.50 16 12 C 0.13 4.72 5.67 86.38 0.49 5.21 16 13 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 14 C 0.02 1.21 4.97 29.85 0.15 1.36 16 15 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 17 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 18 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 19 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 C -0.06 -1.48 9.24 22.53 0.21 -1.27 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 28 H 0.06 0.90 8.08 -2.38 -0.02 0.88 16 29 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.15 1.91 6.40 -2.91 -0.02 1.89 16 32 H 0.42 9.14 6.51 -92.71 -0.60 8.54 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.12 3.25 7.65 -2.91 -0.02 3.23 16 Total: -1.00 -75.77 344.07 3.00 -72.78 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.42 Total: 11.79 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.48 Total: -15.68 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -2.28 Total: -80.75 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.66 Total: -34.00 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -75.77 3.00 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.083 kcal (2) G-P(sol) polarization free energy of solvation -75.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds