Wall clock time and date at job start Mon Mar 30 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38365 * 119.85439 * 269.72188 * 4 3 2 6 6 C 1.37956 * 120.14604 * 179.72711 * 5 4 3 7 7 C 1.39575 * 119.85049 * 0.54893 * 6 5 4 8 8 C 1.47852 * 120.14704 * 179.70411 * 7 6 5 9 9 O 1.21543 * 120.00478 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99319 * 0.02614 * 8 7 6 11 11 C 1.46496 * 119.99770 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47446 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47460 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47246 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99607 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00561 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99468 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47125 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47191 * 119.99982 * 18 16 14 21 21 H 1.48501 * 109.47277 * 240.00273 * 18 16 14 22 22 C 1.39580 * 119.71270 * 359.72610 * 7 6 5 23 23 C 1.37949 * 119.85288 * 0.02562 * 22 7 6 24 24 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 26 26 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 27 27 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 28 28 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 29 29 H 1.08000 * 119.92703 * 0.02562 * 5 4 3 30 30 H 1.07995 * 120.07611 * 180.25511 * 6 5 4 31 31 H 0.96997 * 120.00444 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47235 * 300.00164 * 11 10 8 33 33 H 1.09004 * 109.47036 * 59.99722 * 11 10 8 34 34 H 1.08996 * 109.46914 * 300.00315 * 12 11 10 35 35 H 1.09004 * 109.46918 * 60.00032 * 12 11 10 36 36 H 1.09001 * 109.47267 * 300.00575 * 13 12 11 37 37 H 1.09004 * 109.46990 * 60.00124 * 13 12 11 38 38 H 0.96996 * 120.00092 * 179.97438 * 17 16 14 39 39 H 1.08009 * 120.07243 * 179.97438 * 22 7 6 40 40 H 1.08005 * 119.93174 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1991 1.1381 1.2009 6 6 5.5739 1.0235 1.2086 7 6 6.2731 0.9679 0.0019 8 6 7.7470 0.8517 0.0024 9 8 8.3533 0.8039 -1.0499 10 7 8.4183 0.7987 1.1700 11 6 9.8787 0.6830 1.1706 12 6 10.3866 0.6436 2.6133 13 6 11.9117 0.5221 2.6140 14 6 12.4119 0.4827 4.0350 15 1 11.7119 0.5383 4.8556 16 6 13.7631 0.3746 4.2875 17 7 14.6154 0.3064 3.2883 18 14 14.3830 0.3251 6.0489 19 1 13.2312 0.4166 6.9818 20 1 15.1086 -0.9494 6.2827 21 1 15.3019 1.4679 6.2827 22 6 5.5748 1.0229 -1.2055 23 6 4.1997 1.1324 -1.1990 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 3.6572 1.1853 2.1339 30 1 6.1083 0.9817 2.1461 31 1 7.9345 0.8371 2.0098 32 1 10.1708 -0.2330 0.6571 33 1 10.3114 1.5414 0.6568 34 1 10.0944 1.5598 3.1264 35 1 9.9539 -0.2146 3.1275 36 1 12.2034 -0.3942 2.1009 37 1 12.3447 1.3801 2.0997 38 1 15.5659 0.2308 3.4659 39 1 6.1101 0.9808 -2.1427 40 1 3.6582 1.1755 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171506137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:39 Heat of formation + Delta-G solvation = -74.654293 kcal Electronic energy + Delta-G solvation = -19856.654642 eV Core-core repulsion = 16635.799047 eV Total energy + Delta-G solvation = -3220.855595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29130 -38.91510 -37.68596 -35.45440 -33.43564 -32.50560 -31.40676 -30.88735 -28.06581 -26.77641 -25.77345 -23.43509 -22.91742 -22.11001 -20.70601 -20.02455 -17.92545 -16.83493 -16.61987 -16.40823 -16.22805 -15.64546 -15.31915 -14.94754 -14.67456 -14.42414 -14.22006 -13.95618 -13.77365 -13.18809 -12.77948 -12.70660 -12.29427 -12.00918 -11.84846 -11.72926 -11.58014 -11.31815 -10.92644 -10.73928 -10.58007 -10.16266 -9.97530 -9.87978 -9.40846 -9.24324 -9.16953 -9.11174 -8.76286 -8.37957 -6.02268 -4.05329 0.56703 1.12938 2.73265 3.29760 3.32522 3.37472 3.41112 3.45116 3.83651 4.41207 4.42438 4.44227 4.63723 4.74745 4.83512 4.87140 4.94018 4.96555 5.11821 5.24030 5.33165 5.33574 5.50886 5.69484 5.74763 5.76811 6.01114 6.14462 6.15738 6.21078 6.44665 6.58709 6.59142 6.66911 6.81842 6.99023 7.63302 7.66944 7.75532 7.96503 8.32582 8.38307 9.01527 9.58891 11.09037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034863 B = 0.002420 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.950644 B =11565.240797 C =12229.925379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.100 3.900 4 C -0.075 4.075 5 C -0.105 4.105 6 C -0.089 4.089 7 C -0.121 4.121 8 C 0.550 3.450 9 O -0.540 6.540 10 N -0.720 5.720 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.064 4.064 23 C -0.107 4.107 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.398 0.602 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.139 0.861 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.326 2.639 -6.079 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.024 3.976 4 C -0.075 4.075 5 C -0.124 4.124 6 C -0.108 4.108 7 C -0.124 4.124 8 C 0.336 3.664 9 O -0.418 6.418 10 N -0.370 5.370 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.015 4.015 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.083 4.083 23 C -0.125 4.125 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.233 0.767 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -27.552 2.422 -6.858 28.496 hybrid contribution 0.024 0.200 1.411 1.426 sum -27.528 2.622 -5.447 28.184 Atomic orbital electron populations 1.22781 0.80793 1.03026 1.00052 1.87994 1.19751 1.27185 1.95419 1.21389 0.89716 0.85308 1.01194 1.19754 0.94107 0.99980 0.93667 1.20972 0.93904 0.99774 0.97701 1.21350 0.94382 0.97696 0.97345 1.20145 0.93437 1.04387 0.94442 1.18287 0.86817 0.77029 0.84242 1.90767 1.69686 1.50131 1.31237 1.46151 1.09169 1.73746 1.07967 1.21697 0.77031 1.02053 0.99896 1.21898 1.00915 1.00920 0.92194 1.19039 0.87375 0.97653 0.97388 1.21239 0.92002 1.50455 0.92317 0.92578 1.25040 0.97087 0.95307 0.97110 1.69972 1.02340 1.50308 1.30609 0.86522 0.78838 0.77605 0.84929 1.19764 1.21002 1.21005 1.21291 0.93648 0.95331 0.98029 1.21019 0.93892 0.99879 0.97687 0.89411 0.93926 0.93958 0.92156 0.92137 0.85289 0.85155 0.76738 0.91536 0.91546 0.92677 0.92670 0.96216 0.96221 0.92972 0.84350 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.41 10.69 -35.23 -0.38 -3.79 16 3 C 0.10 0.72 6.06 36.01 0.22 0.94 16 4 C -0.07 -0.68 5.52 -104.53 -0.58 -1.26 16 5 C -0.11 -0.96 9.68 -39.64 -0.38 -1.34 16 6 C -0.09 -0.91 9.54 -39.19 -0.37 -1.28 16 7 C -0.12 -1.53 5.87 -104.96 -0.62 -2.15 16 8 C 0.55 8.69 7.77 -12.32 -0.10 8.60 16 9 O -0.54 -10.50 16.35 5.33 0.09 -10.41 16 10 N -0.72 -10.70 5.51 -61.25 -0.34 -11.04 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.04 16 12 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 13 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 14 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 C -0.06 -0.75 9.60 -39.19 -0.38 -1.12 16 23 C -0.11 -1.02 9.68 -39.64 -0.38 -1.41 16 24 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.06 0.34 8.08 -51.93 -0.42 -0.07 16 28 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 1.07 6.41 -52.49 -0.34 0.74 16 31 H 0.40 4.74 6.51 -40.82 -0.27 4.48 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.14 1.62 7.65 -52.48 -0.40 1.22 16 40 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 344.07 15.07 5.18 5.18 Total: -1.00 -33.67 344.07 -7.95 -41.62 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.03 Total: -0.77 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.19 Total: -11.17 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.40 Total: -37.16 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.29 Total: -14.20 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.67 -7.95 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.032 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds