Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47449 * 2 1 4 4 C 1.34224 * 117.00427 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99702 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00160 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.46761 * 40.00860 * 6 4 3 8 8 C 1.52999 * 109.47288 * 280.00308 * 6 4 3 9 9 C 1.50700 * 109.47063 * 174.99983 * 8 6 4 10 10 C 1.38228 * 120.00054 * 89.99910 * 9 8 6 11 11 C 1.38238 * 119.99963 * 179.72386 * 10 9 8 12 12 C 1.38231 * 119.99883 * 0.25967 * 11 10 9 13 13 C 1.38233 * 120.00350 * 0.02562 * 12 11 10 14 14 C 1.38236 * 119.99757 * 359.97438 * 13 12 11 15 15 N 1.46505 * 109.46857 * 160.00537 * 6 4 3 16 16 C 1.46497 * 120.00310 * 64.75343 * 15 6 4 17 17 C 1.36941 * 119.99477 * 244.75579 * 15 6 4 18 18 H 1.07990 * 120.00400 * 23.42280 * 17 15 6 19 19 C 1.38819 * 119.99402 * 203.42176 * 17 15 6 20 20 N 1.31616 * 119.99903 * 11.24352 * 19 17 15 21 21 Si 1.86798 * 119.99585 * 191.23978 * 19 17 15 22 22 H 1.48509 * 109.47075 * 90.00217 * 21 19 17 23 23 H 1.48497 * 109.47273 * 209.99985 * 21 19 17 24 24 H 1.48493 * 109.47301 * 330.00518 * 21 19 17 25 25 H 1.08999 * 109.47220 * 59.99970 * 1 2 3 26 26 H 1.09001 * 109.46884 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47314 * 299.99898 * 1 2 3 28 28 H 1.08995 * 109.47456 * 239.99704 * 2 1 3 29 29 H 1.09009 * 109.47070 * 119.99891 * 2 1 3 30 30 H 1.09000 * 109.47073 * 54.99999 * 8 6 4 31 31 H 1.08997 * 109.47296 * 295.00115 * 8 6 4 32 32 H 1.08003 * 120.00265 * 0.02562 * 10 9 8 33 33 H 1.08000 * 119.99682 * 180.28103 * 11 10 9 34 34 H 1.08007 * 119.99701 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.00277 * 180.02562 * 13 12 11 36 36 H 1.08004 * 119.99865 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.46558 * 89.99782 * 16 15 6 38 38 H 1.08994 * 109.47396 * 209.99602 * 16 15 6 39 39 H 1.09001 * 109.47048 * 330.00339 * 16 15 6 40 40 H 0.97003 * 119.99481 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.3319 3.5743 0.6600 8 6 3.8849 3.5036 -1.4209 9 6 4.3459 4.9382 -1.4017 10 6 5.6859 5.2358 -1.5651 11 6 6.1081 6.5521 -1.5532 12 6 5.1909 7.5704 -1.3726 13 6 3.8517 7.2726 -1.2034 14 6 3.4296 5.9563 -1.2153 15 7 5.3066 2.8927 0.4730 16 6 6.3243 2.1836 -0.3066 17 6 5.6507 3.5139 1.6439 18 1 4.8995 3.7013 2.3968 19 6 6.9652 3.9025 1.8631 20 7 7.8320 3.8796 0.8729 21 14 7.5037 4.4582 3.5633 22 1 7.9825 3.2856 4.3387 23 1 8.6023 5.4491 3.4354 24 1 6.3544 5.0814 4.2674 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 2.8663 3.4545 -1.8060 31 1 4.5443 2.9186 -2.0620 32 1 6.4024 4.4402 -1.7068 33 1 7.1544 6.7847 -1.6854 34 1 5.5208 8.5988 -1.3638 35 1 3.1351 8.0683 -1.0627 36 1 2.3832 5.7236 -1.0835 37 1 6.7812 2.8713 -1.0182 38 1 7.0895 1.7935 0.3644 39 1 5.8591 1.3586 -0.8461 40 1 8.7505 4.1515 1.0260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171920474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = -38.565997 kcal Electronic energy + Delta-G solvation = -22301.686040 eV Core-core repulsion = 19082.395352 eV Total energy + Delta-G solvation = -3219.290689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.93292 -38.57548 -36.52338 -35.23652 -32.85863 -31.47259 -30.63714 -30.15263 -28.24790 -26.00039 -24.58555 -23.16649 -21.83958 -21.81108 -20.62693 -19.36733 -17.27102 -16.58683 -16.30563 -15.90991 -15.57347 -14.98875 -14.56958 -14.35079 -13.82142 -13.58867 -13.25482 -12.96372 -12.81319 -12.66007 -12.22954 -12.08226 -11.83868 -11.66212 -11.46655 -11.33142 -10.92434 -10.86862 -10.73229 -10.49154 -10.36285 -10.17705 -10.15780 -10.02389 -9.89821 -9.40301 -8.55063 -8.15453 -7.97271 -6.83022 -5.76912 -3.22755 2.03636 2.17767 2.96832 3.21254 3.39163 3.44674 3.45983 4.47201 4.52416 5.05633 5.10434 5.22008 5.31731 5.42326 5.45789 5.50834 5.55138 5.64685 5.72570 5.85719 5.88096 5.92978 6.03094 6.13211 6.13916 6.19117 6.39353 6.49468 6.72812 6.80069 6.90862 7.07312 7.11073 7.24973 7.43862 7.49887 7.68763 7.77574 7.86001 8.30534 8.53723 9.18067 9.76849 10.24802 11.28001 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.007560 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.944996 B = 3702.920538 C = 5092.327643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.370 6.370 4 C 0.437 3.563 5 O -0.503 6.503 6 C 0.192 3.808 7 H 0.098 0.902 8 C -0.084 4.084 9 C -0.063 4.063 10 C -0.060 4.060 11 C -0.116 4.116 12 C -0.132 4.132 13 C -0.135 4.135 14 C -0.121 4.121 15 N -0.559 5.559 16 C 0.156 3.844 17 C -0.263 4.263 18 H 0.067 0.933 19 C 0.017 3.983 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.026 0.974 38 H 0.051 0.949 39 H 0.014 0.986 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.448 0.348 -5.695 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.287 6.287 4 C 0.276 3.724 5 O -0.388 6.388 6 C 0.078 3.922 7 H 0.116 0.884 8 C -0.123 4.123 9 C -0.063 4.063 10 C -0.078 4.078 11 C -0.134 4.134 12 C -0.150 4.150 13 C -0.153 4.153 14 C -0.140 4.140 15 N -0.279 5.279 16 C 0.012 3.988 17 C -0.392 4.392 18 H 0.085 0.915 19 C -0.183 4.183 20 N -0.538 5.538 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.997 0.072 -5.676 11.497 hybrid contribution 0.491 0.043 1.191 1.289 sum -9.506 0.114 -4.485 10.512 Atomic orbital electron populations 1.21773 0.93370 1.02291 1.03229 1.22843 0.94771 0.82151 1.01933 1.86621 1.26545 1.30943 1.84582 1.26513 0.79347 0.95249 0.71282 1.90560 1.60000 1.43497 1.44759 1.19937 0.89124 0.87266 0.95825 0.88444 1.20954 1.00882 0.93456 0.97018 1.19496 0.93786 0.93890 0.99166 1.21176 0.95005 0.96476 0.95136 1.21032 0.98821 0.93186 1.00403 1.20970 0.93621 0.98502 1.01901 1.20863 0.95681 0.96071 1.02671 1.20889 0.98855 0.92674 1.01536 1.43744 1.00537 1.58809 1.24823 1.20993 0.90498 0.92427 0.94857 1.19141 0.94271 1.33158 0.92582 0.91518 1.24885 0.97034 0.99017 0.97320 1.70053 1.03797 1.50777 1.29201 0.86268 0.78177 0.78009 0.84123 1.21546 1.21664 1.20509 0.91722 0.90933 0.91693 0.91963 0.91898 0.91281 0.91000 0.85111 0.87020 0.87396 0.87257 0.86964 0.95563 0.93038 0.96726 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.37 -6.37 10.22 -39.24 -0.40 -6.77 16 4 C 0.44 8.82 7.15 36.01 0.26 9.08 16 5 O -0.50 -11.49 14.01 -18.75 -0.26 -11.76 16 6 C 0.19 3.96 2.61 -69.08 -0.18 3.78 16 7 H 0.10 2.00 7.89 -51.93 -0.41 1.59 16 8 C -0.08 -1.50 4.70 -27.88 -0.13 -1.64 16 9 C -0.06 -1.18 4.95 -104.62 -0.52 -1.70 16 10 C -0.06 -1.21 9.25 -39.58 -0.37 -1.58 16 11 C -0.12 -2.18 10.05 -39.58 -0.40 -2.57 16 12 C -0.13 -2.21 10.05 -39.59 -0.40 -2.60 16 13 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 14 C -0.12 -2.04 9.70 -39.58 -0.38 -2.43 16 15 N -0.56 -13.64 2.07 -174.81 -0.36 -14.00 16 16 C 0.16 3.85 7.28 59.85 0.44 4.29 16 17 C -0.26 -7.03 9.58 -15.05 -0.14 -7.17 16 18 H 0.07 1.79 7.84 -52.49 -0.41 1.37 16 19 C 0.02 0.45 5.10 -17.43 -0.09 0.37 16 20 N -0.89 -24.48 10.67 55.49 0.59 -23.88 16 21 Si 0.90 21.77 29.57 -169.99 -5.03 16.74 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.06 0.91 8.13 -51.92 -0.42 0.49 16 30 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 31 H 0.07 1.32 7.32 -51.93 -0.38 0.94 16 32 H 0.13 2.87 5.63 -52.48 -0.30 2.57 16 33 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.03 0.65 5.22 -51.93 -0.27 0.38 16 38 H 0.05 1.40 6.97 -51.93 -0.36 1.04 16 39 H 0.01 0.34 6.10 -51.93 -0.32 0.03 16 40 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -29.63 331.07 -7.98 -37.60 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.81 Total: 1.91 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.70 Total: -4.84 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.23 Total: -37.88 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.66 Total: -18.52 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.63 -7.98 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171920474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.961 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds