Wall clock time and date at job start Mon Mar 30 2020 01:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.47307 * 2 1 4 4 C 1.34225 * 117.00650 * 180.02562 * 3 2 1 5 5 O 1.20835 * 119.99549 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00600 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47097 * 328.00778 * 6 4 3 8 8 C 1.50703 * 109.47042 * 88.00422 * 6 4 3 9 9 C 1.38231 * 120.00013 * 79.73039 * 8 6 4 10 10 C 1.38242 * 119.99824 * 179.81131 * 9 8 6 11 11 C 1.38231 * 119.99939 * 0.39674 * 10 9 8 12 12 C 1.38236 * 120.00051 * 359.84980 * 11 10 9 13 13 C 1.38231 * 119.99989 * 359.96797 * 12 11 10 14 14 N 1.46896 * 109.47190 * 208.00404 * 6 4 3 15 15 C 1.46899 * 111.00144 * 57.26086 * 14 6 4 16 16 C 1.46901 * 110.99925 * 181.21661 * 14 6 4 17 17 C 1.50696 * 109.47230 * 170.00364 * 16 14 6 18 18 H 1.08005 * 119.99678 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00182 * 179.97438 * 17 16 14 20 20 N 1.31513 * 119.99929 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99876 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46793 * 90.00133 * 21 19 17 23 23 H 1.48498 * 109.46917 * 210.00026 * 21 19 17 24 24 H 1.48502 * 109.47080 * 330.00158 * 21 19 17 25 25 H 1.09003 * 109.47244 * 59.99710 * 1 2 3 26 26 H 1.09001 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47033 * 300.00028 * 1 2 3 28 28 H 1.09007 * 109.47189 * 240.00726 * 2 1 3 29 29 H 1.08994 * 109.47154 * 120.00536 * 2 1 3 30 30 H 1.08002 * 120.00174 * 359.97438 * 9 8 6 31 31 H 1.07999 * 119.99761 * 180.22669 * 10 9 8 32 32 H 1.07999 * 120.00010 * 179.83900 * 11 10 9 33 33 H 1.08002 * 120.00057 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.00138 * 179.97438 * 13 12 11 35 35 H 1.08996 * 109.47135 * 178.27598 * 15 14 6 36 36 H 1.09003 * 109.46995 * 298.27628 * 15 14 6 37 37 H 1.08995 * 109.46955 * 58.27305 * 15 14 6 38 38 H 1.09008 * 109.46931 * 289.99749 * 16 14 6 39 39 H 1.09002 * 109.47376 * 49.99782 * 16 14 6 40 40 H 0.96998 * 119.99940 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.2539 3.6067 -0.5437 8 6 4.0677 3.4197 1.4202 9 6 5.1438 3.0058 2.1828 10 6 5.2806 3.4513 3.4843 11 6 4.3371 4.3041 4.0257 12 6 3.2582 4.7139 3.2648 13 6 3.1234 4.2715 1.9621 14 7 5.2375 2.9229 -0.6509 15 6 5.1428 2.3958 -2.0188 16 6 5.8434 4.2611 -0.6431 17 6 7.2792 4.1651 -1.0906 18 1 7.6997 3.2058 -1.3540 19 6 8.0560 5.3019 -1.1638 20 7 9.3092 5.2180 -1.5538 21 14 7.3284 6.9612 -0.7089 22 1 7.5365 7.2124 0.7399 23 1 7.9967 8.0275 -1.4972 24 1 5.8738 6.9625 -1.0076 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.8790 2.3365 1.7610 31 1 6.1233 3.1309 4.0789 32 1 4.4426 4.6501 5.0434 33 1 2.5208 5.3799 3.6879 34 1 2.2803 4.5913 1.3677 35 1 6.1262 2.4246 -2.4881 36 1 4.7851 1.3666 -1.9876 37 1 4.4469 3.0050 -2.5955 38 1 5.2939 4.9127 -1.3227 39 1 5.8039 4.6721 0.3657 40 1 9.8555 6.0178 -1.6057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177183041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:22 Heat of formation + Delta-G solvation = -47.142296 kcal Electronic energy + Delta-G solvation = -22064.426741 eV Core-core repulsion = 18844.764156 eV Total energy + Delta-G solvation = -3219.662585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58468 -38.96300 -36.99041 -35.86713 -32.71513 -31.90046 -31.30642 -30.60258 -28.42274 -26.86236 -24.64563 -23.14357 -22.30039 -21.80025 -21.04665 -19.59997 -17.59053 -17.10831 -16.77331 -16.33860 -15.84164 -15.16074 -14.97975 -14.36802 -14.12609 -13.87666 -13.67232 -13.45129 -13.07389 -12.93489 -12.63462 -12.52020 -12.26024 -12.17210 -11.84244 -11.62872 -11.57117 -11.07287 -10.83807 -10.81366 -10.64477 -10.52872 -10.44020 -10.12809 -9.88565 -9.31280 -8.63681 -8.61259 -8.42438 -7.55512 -6.06153 -4.03762 1.48953 1.70453 2.46109 2.73791 3.28558 3.35597 3.37769 4.03087 4.41158 4.57939 4.81547 4.83373 4.94202 4.96981 5.15638 5.17016 5.22681 5.26702 5.39772 5.48877 5.59009 5.64188 5.75628 5.81843 5.90268 6.00353 6.12972 6.17009 6.35642 6.50926 6.62658 6.67707 6.80109 6.82256 6.89830 6.92443 7.26004 7.49024 7.73876 7.82411 8.07896 8.60308 9.02636 9.54790 11.06655 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.006425 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.817588 B = 4357.179711 C = 5420.833562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.472 3.528 5 O -0.482 6.482 6 C 0.134 3.866 7 H 0.070 0.930 8 C -0.082 4.082 9 C -0.067 4.067 10 C -0.127 4.127 11 C -0.117 4.117 12 C -0.131 4.131 13 C -0.107 4.107 14 N -0.507 5.507 15 C 0.028 3.972 16 C 0.163 3.837 17 C -0.508 4.508 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.870 3.130 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.267 1.267 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.014 0.986 38 H -0.009 1.009 39 H 0.034 0.966 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.127 -5.087 6.952 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.312 3.688 5 O -0.366 6.366 6 C 0.024 3.976 7 H 0.087 0.913 8 C -0.082 4.082 9 C -0.086 4.086 10 C -0.145 4.145 11 C -0.135 4.135 12 C -0.149 4.149 13 C -0.125 4.125 14 N -0.232 5.232 15 C -0.120 4.120 16 C 0.038 3.962 17 C -0.546 4.546 18 H 0.101 0.899 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.697 3.303 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.192 1.192 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.159 0.841 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.008 0.992 39 H 0.052 0.948 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.449 -5.624 7.169 18.804 hybrid contribution -0.714 1.411 -0.287 1.607 sum -17.163 -4.213 6.882 18.965 Atomic orbital electron populations 1.21792 0.92840 1.02723 1.03445 1.22966 0.95143 0.80691 1.02504 1.86510 1.25007 1.32011 1.84438 1.23568 0.80147 0.92528 0.72528 1.90647 1.60104 1.42450 1.43407 1.20061 0.93517 0.89294 0.94714 0.91283 1.19307 0.96468 0.99037 0.93407 1.21267 0.96460 0.97965 0.92866 1.21200 0.99151 0.98428 0.95719 1.21150 0.94823 0.97919 0.99653 1.20981 0.98659 1.00963 0.94313 1.20994 0.98513 0.97323 0.95684 1.61885 1.15153 1.27996 1.18214 1.22411 1.03074 0.98056 0.88502 1.20289 0.95785 0.83406 0.96708 1.20952 0.93026 0.96120 1.44519 0.89883 1.24834 0.94658 0.98604 0.94865 1.69884 1.06829 1.29211 1.47747 0.86940 0.79804 0.84520 0.79063 1.19984 1.21151 1.19226 0.91548 0.90431 0.91533 0.91352 0.91375 0.84146 0.85938 0.86389 0.86249 0.86105 0.89060 0.92634 0.96769 0.99154 0.94832 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.37 10.22 -39.25 -0.40 -5.77 16 4 C 0.47 8.24 6.11 36.00 0.22 8.46 16 5 O -0.48 -9.49 15.08 -18.76 -0.28 -9.77 16 6 C 0.13 2.45 2.18 -70.02 -0.15 2.30 16 7 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 8 C -0.08 -1.43 3.60 -104.62 -0.38 -1.81 16 9 C -0.07 -1.22 8.43 -39.58 -0.33 -1.55 16 10 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 11 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 12 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 13 C -0.11 -1.60 9.67 -39.58 -0.38 -1.99 16 14 N -0.51 -10.87 3.68 -239.14 -0.88 -11.75 16 15 C 0.03 0.55 8.98 60.06 0.54 1.09 16 16 C 0.16 3.95 3.46 -4.98 -0.02 3.93 16 17 C -0.51 -14.30 8.99 -34.44 -0.31 -14.61 16 18 H 0.08 2.55 7.38 -52.48 -0.39 2.16 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 21 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.14 2.81 7.73 -52.49 -0.41 2.40 16 31 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.56 8.04 -52.49 -0.42 1.14 16 35 H 0.09 1.99 6.72 -51.93 -0.35 1.64 16 36 H 0.05 1.06 6.23 -51.93 -0.32 0.73 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 38 H -0.01 -0.22 7.18 -51.92 -0.37 -0.60 16 39 H 0.03 0.82 5.61 -51.93 -0.29 0.53 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -31.97 332.89 -7.87 -39.84 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.94 Total: 0.85 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.49 Total: -8.66 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.11 Total: -38.32 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.68 Total: -15.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.97 -7.87 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177183041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.301 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds