Wall clock time and date at job start Mon Mar 30 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45193 * 109.47132 * 2 1 4 4 C 1.34233 * 117.00268 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99218 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00479 * 180.02562 * 4 3 2 7 7 H 1.09007 * 109.46956 * 59.99555 * 6 4 3 8 8 C 1.50701 * 109.46914 * 299.99656 * 6 4 3 9 9 C 1.38234 * 119.99826 * 310.42200 * 8 6 4 10 10 C 1.38236 * 119.99787 * 180.02562 * 9 8 6 11 11 C 1.38239 * 120.00010 * 359.95389 * 10 9 8 12 12 C 1.38232 * 119.99977 * 359.97438 * 11 10 9 13 13 C 1.38232 * 120.00302 * 0.07603 * 12 11 10 14 14 N 1.46903 * 109.47274 * 179.97438 * 6 4 3 15 15 C 1.46895 * 110.99896 * 68.48476 * 14 6 4 16 16 C 1.46896 * 110.99780 * 192.44036 * 14 6 4 17 17 C 1.50701 * 109.47116 * 170.00411 * 16 14 6 18 18 H 1.07996 * 119.99824 * 359.97438 * 17 16 14 19 19 C 1.37871 * 120.00250 * 180.02562 * 17 16 14 20 20 N 1.31522 * 119.99968 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46726 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47468 * 119.99149 * 21 19 17 24 24 H 1.48498 * 109.47319 * 239.99755 * 21 19 17 25 25 H 1.09000 * 109.46996 * 299.99689 * 1 2 3 26 26 H 1.08999 * 109.46990 * 60.00212 * 1 2 3 27 27 H 1.08995 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46905 * 239.99568 * 2 1 3 29 29 H 1.08999 * 109.46990 * 119.99788 * 2 1 3 30 30 H 1.07998 * 120.00151 * 359.97418 * 9 8 6 31 31 H 1.08002 * 120.00147 * 179.97438 * 10 9 8 32 32 H 1.08002 * 120.00151 * 179.72238 * 11 10 9 33 33 H 1.08002 * 120.00072 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.00579 * 179.97438 * 13 12 11 35 35 H 1.09003 * 109.46983 * 68.57508 * 15 14 6 36 36 H 1.08993 * 109.47098 * 188.58072 * 15 14 6 37 37 H 1.09004 * 109.47236 * 308.57833 * 15 14 6 38 38 H 1.09007 * 109.46967 * 289.99817 * 16 14 6 39 39 H 1.09003 * 109.47552 * 49.99804 * 16 14 6 40 40 H 0.97000 * 119.99738 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4690 0.8905 8 6 3.4558 3.6737 -1.2299 9 6 3.5723 3.0833 -2.4743 10 6 3.1463 3.7590 -3.6025 11 6 2.6029 5.0248 -3.4861 12 6 2.4850 5.6146 -2.2415 13 6 2.9120 4.9393 -1.1134 14 7 5.3878 2.8604 -0.0001 15 6 5.8871 2.3311 -1.2762 16 6 5.9836 4.1701 0.2958 17 6 7.4635 4.0075 0.5295 18 1 7.9160 3.0291 0.4651 19 6 8.2395 5.1077 0.8266 20 7 7.6883 6.2993 0.9056 21 14 10.0737 4.9061 1.1170 22 1 10.4435 3.4752 0.9718 23 1 10.8241 5.7149 0.1231 24 1 10.4117 5.3677 2.4874 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9970 2.0945 -2.5652 31 1 3.2377 3.2979 -4.5749 32 1 2.2741 5.5545 -4.3680 33 1 2.0609 6.6036 -2.1506 34 1 2.8203 5.4002 -0.1410 35 1 5.7046 3.0583 -2.0675 36 1 6.9574 2.1413 -1.1969 37 1 5.3696 1.4010 -1.5112 38 1 5.8206 4.8422 -0.5468 39 1 5.5184 4.5876 1.1888 40 1 8.2343 7.0733 1.1143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177183053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:24 Heat of formation + Delta-G solvation = -46.201908 kcal Electronic energy + Delta-G solvation = -22085.399238 eV Core-core repulsion = 18865.777431 eV Total energy + Delta-G solvation = -3219.621807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61885 -39.02674 -36.86685 -35.70960 -32.80617 -31.81376 -30.96594 -30.68087 -27.76063 -27.11654 -24.59895 -23.14141 -22.22369 -21.84735 -21.21015 -19.69411 -17.52737 -16.84881 -16.55352 -16.17038 -15.67496 -15.27656 -14.89821 -14.51580 -14.05363 -13.89228 -13.65314 -13.37162 -13.18770 -12.85547 -12.58410 -12.27035 -12.16011 -11.77324 -11.74946 -11.50401 -11.29919 -11.13281 -10.88846 -10.75860 -10.63849 -10.52937 -10.33230 -10.08098 -9.82548 -9.24245 -8.65619 -8.50668 -8.41848 -7.37661 -6.04043 -4.04882 1.54798 1.65056 2.55168 2.82038 3.31720 3.39107 3.45067 4.00485 4.43154 4.79748 4.85856 4.89193 4.99296 5.09053 5.16526 5.22162 5.23976 5.32168 5.33404 5.56708 5.65135 5.70281 5.74259 5.82065 5.89018 6.13380 6.15569 6.25889 6.38267 6.60522 6.65177 6.71738 6.79648 6.83125 7.15052 7.21158 7.30239 7.72585 7.94444 8.09603 8.14358 8.45749 9.02485 9.59089 11.06920 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.005679 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.818825 B = 4929.539151 C = 5944.734927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.471 3.529 5 O -0.487 6.487 6 C 0.131 3.869 7 H 0.119 0.881 8 C -0.102 4.102 9 C -0.107 4.107 10 C -0.125 4.125 11 C -0.120 4.120 12 C -0.121 4.121 13 C -0.091 4.091 14 N -0.508 5.508 15 C 0.028 3.972 16 C 0.195 3.805 17 C -0.506 4.506 18 H 0.065 0.935 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.001 0.999 39 H 0.031 0.969 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.855 -6.309 -6.075 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.313 3.687 5 O -0.372 6.372 6 C 0.020 3.980 7 H 0.136 0.864 8 C -0.104 4.104 9 C -0.125 4.125 10 C -0.143 4.143 11 C -0.139 4.139 12 C -0.139 4.139 13 C -0.110 4.110 14 N -0.232 5.232 15 C -0.120 4.120 16 C 0.071 3.929 17 C -0.545 4.545 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.019 0.981 39 H 0.049 0.951 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.431 -6.791 -5.635 16.916 hybrid contribution 0.891 0.488 -0.428 1.102 sum -13.541 -6.303 -6.062 16.120 Atomic orbital electron populations 1.21783 0.92937 1.02583 1.03465 1.22938 0.95101 0.80938 1.02341 1.86536 1.24990 1.31636 1.84411 1.23701 0.80087 0.92655 0.72307 1.90625 1.60099 1.42612 1.43875 1.20335 0.92266 0.88000 0.97353 0.86364 1.20222 0.99202 0.95956 0.95030 1.21179 0.98736 1.00272 0.92325 1.21021 0.99710 0.95470 0.98088 1.21085 0.99967 0.95465 0.97360 1.21079 1.00561 0.99677 0.92596 1.21038 0.96995 0.93846 0.99107 1.62316 0.98722 1.30207 1.31918 1.22600 1.01792 0.97780 0.89852 1.19823 0.94924 0.82197 0.95955 1.21157 0.91965 0.94143 1.47248 0.91662 1.24957 0.98886 0.95095 0.95519 1.69969 1.35777 0.98619 1.49338 0.86431 0.84974 0.78263 0.77722 1.19607 1.21112 1.20990 0.91524 0.91582 0.90564 0.91592 0.91400 0.86202 0.86374 0.86437 0.86117 0.85748 0.95560 0.90667 0.92608 0.98116 0.95096 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.36 -5.48 10.14 -39.27 -0.40 -5.88 16 4 C 0.47 8.42 6.09 36.00 0.22 8.64 16 5 O -0.49 -9.76 14.34 -18.75 -0.27 -10.03 16 6 C 0.13 2.46 2.58 -70.02 -0.18 2.27 16 7 H 0.12 2.12 7.65 -51.93 -0.40 1.72 16 8 C -0.10 -1.76 3.88 -104.62 -0.41 -2.17 16 9 C -0.11 -1.73 6.74 -39.58 -0.27 -1.99 16 10 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 11 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 12 C -0.12 -1.72 10.05 -39.59 -0.40 -2.12 16 13 C -0.09 -1.47 9.67 -39.58 -0.38 -1.85 16 14 N -0.51 -11.36 4.39 -239.14 -1.05 -12.41 16 15 C 0.03 0.58 7.33 60.06 0.44 1.02 16 16 C 0.20 5.04 4.42 -4.98 -0.02 5.01 16 17 C -0.51 -14.30 8.57 -34.44 -0.30 -14.60 16 18 H 0.07 1.86 7.10 -52.49 -0.37 1.48 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 21 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.12 1.94 5.63 -52.49 -0.30 1.64 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.88 7.97 -52.49 -0.42 1.46 16 35 H 0.03 0.54 5.80 -51.93 -0.30 0.24 16 36 H 0.07 1.66 6.99 -51.93 -0.36 1.30 16 37 H 0.06 1.09 4.93 -51.93 -0.26 0.83 16 38 H 0.00 0.03 7.74 -51.93 -0.40 -0.37 16 39 H 0.03 0.84 7.90 -51.93 -0.41 0.43 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -31.77 329.27 -8.35 -40.11 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.73 Total: 0.55 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.57 Total: -8.40 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.31 Total: -38.09 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.67 Total: -15.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.77 -8.35 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177183053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.088 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds