Wall clock time and date at job start Mon Mar 30 2020 01:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45193 * 109.47132 * 2 1 4 4 C 1.34233 * 117.00268 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99218 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00479 * 180.02562 * 4 3 2 7 7 H 1.09007 * 109.46956 * 59.99555 * 6 4 3 8 8 C 1.50701 * 109.46914 * 299.99656 * 6 4 3 9 9 C 1.38234 * 119.99826 * 310.42200 * 8 6 4 10 10 C 1.38236 * 119.99787 * 180.02562 * 9 8 6 11 11 C 1.38239 * 120.00010 * 359.95389 * 10 9 8 12 12 C 1.38232 * 119.99977 * 359.97438 * 11 10 9 13 13 C 1.38232 * 120.00302 * 0.07603 * 12 11 10 14 14 N 1.46903 * 109.47274 * 179.97438 * 6 4 3 15 15 C 1.46895 * 110.99896 * 68.48476 * 14 6 4 16 16 C 1.46896 * 110.99780 * 192.44036 * 14 6 4 17 17 C 1.50701 * 109.47116 * 170.00411 * 16 14 6 18 18 H 1.07996 * 119.99824 * 359.97438 * 17 16 14 19 19 C 1.37871 * 120.00250 * 180.02562 * 17 16 14 20 20 N 1.31522 * 119.99968 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46726 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47468 * 119.99149 * 21 19 17 24 24 H 1.48498 * 109.47319 * 239.99755 * 21 19 17 25 25 H 1.09000 * 109.46996 * 299.99689 * 1 2 3 26 26 H 1.08999 * 109.46990 * 60.00212 * 1 2 3 27 27 H 1.08995 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46905 * 239.99568 * 2 1 3 29 29 H 1.08999 * 109.46990 * 119.99788 * 2 1 3 30 30 H 1.07998 * 120.00151 * 359.97418 * 9 8 6 31 31 H 1.08002 * 120.00147 * 179.97438 * 10 9 8 32 32 H 1.08002 * 120.00151 * 179.72238 * 11 10 9 33 33 H 1.08002 * 120.00072 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.00579 * 179.97438 * 13 12 11 35 35 H 1.09003 * 109.46983 * 68.57508 * 15 14 6 36 36 H 1.08993 * 109.47098 * 188.58072 * 15 14 6 37 37 H 1.09004 * 109.47236 * 308.57833 * 15 14 6 38 38 H 1.09007 * 109.46967 * 289.99817 * 16 14 6 39 39 H 1.09003 * 109.47552 * 49.99804 * 16 14 6 40 40 H 0.97000 * 119.99738 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4690 0.8905 8 6 3.4558 3.6737 -1.2299 9 6 3.5723 3.0833 -2.4743 10 6 3.1463 3.7590 -3.6025 11 6 2.6029 5.0248 -3.4861 12 6 2.4850 5.6146 -2.2415 13 6 2.9120 4.9393 -1.1134 14 7 5.3878 2.8604 -0.0001 15 6 5.8871 2.3311 -1.2762 16 6 5.9836 4.1701 0.2958 17 6 7.4635 4.0075 0.5295 18 1 7.9160 3.0291 0.4651 19 6 8.2395 5.1077 0.8266 20 7 7.6883 6.2993 0.9056 21 14 10.0737 4.9061 1.1170 22 1 10.4435 3.4752 0.9718 23 1 10.8241 5.7149 0.1231 24 1 10.4117 5.3677 2.4874 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9970 2.0945 -2.5652 31 1 3.2377 3.2979 -4.5749 32 1 2.2741 5.5545 -4.3680 33 1 2.0609 6.6036 -2.1506 34 1 2.8203 5.4002 -0.1410 35 1 5.7046 3.0583 -2.0675 36 1 6.9574 2.1413 -1.1969 37 1 5.3696 1.4010 -1.5112 38 1 5.8206 4.8422 -0.5468 39 1 5.5184 4.5876 1.1888 40 1 8.2343 7.0733 1.1143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177183053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:23 Heat of formation + Delta-G solvation = -64.924059 kcal Electronic energy + Delta-G solvation = -22086.211091 eV Core-core repulsion = 18865.777431 eV Total energy + Delta-G solvation = -3220.433660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01246 -40.28766 -38.27905 -37.22293 -34.83445 -32.96770 -32.17412 -31.93337 -29.38285 -28.86986 -26.37105 -24.30045 -23.42723 -23.16682 -22.76682 -21.17981 -18.97709 -18.49600 -18.06322 -17.55700 -16.98377 -16.66511 -16.55531 -16.19665 -15.37946 -15.23148 -15.07112 -14.91738 -14.35327 -14.17861 -13.86439 -13.60330 -13.53543 -13.23470 -13.08081 -12.85390 -12.79073 -12.69644 -12.53551 -12.47910 -12.15999 -12.00318 -11.81936 -11.55987 -11.49773 -11.21010 -10.62582 -9.82904 -9.70714 -9.15109 -8.21449 -6.30656 0.36056 0.48216 1.12649 1.40226 1.41041 1.51809 1.56942 2.40461 2.81268 3.11588 3.26843 3.62159 3.75154 3.92245 4.01414 4.06457 4.10773 4.21359 4.26350 4.34823 4.42786 4.56884 4.62495 4.74329 4.82254 4.92994 4.97496 5.01275 5.10874 5.13846 5.16121 5.22662 5.42204 5.51313 5.56446 5.58667 5.63853 5.95861 6.08105 6.16271 6.41768 6.76386 6.83619 7.38206 8.89643 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.005679 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.818825 B = 4929.539151 C = 5944.734927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.482 3.518 5 O -0.514 6.514 6 C 0.127 3.873 7 H 0.117 0.883 8 C -0.121 4.121 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.115 4.115 12 C -0.123 4.123 13 C -0.111 4.111 14 N -0.523 5.523 15 C 0.040 3.960 16 C 0.218 3.782 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.009 3.991 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.277 1.277 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.123 0.877 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.069 0.931 38 H -0.023 1.023 39 H 0.010 0.990 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.712 -6.432 -7.331 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.324 3.676 5 O -0.402 6.402 6 C 0.017 3.983 7 H 0.135 0.865 8 C -0.123 4.123 9 C -0.140 4.140 10 C -0.143 4.143 11 C -0.133 4.133 12 C -0.141 4.141 13 C -0.130 4.130 14 N -0.246 5.246 15 C -0.107 4.107 16 C 0.093 3.907 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.165 0.835 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.087 0.913 38 H -0.005 1.005 39 H 0.028 0.972 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.327 -6.925 -6.895 18.177 hybrid contribution 1.014 0.512 -0.071 1.139 sum -14.313 -6.412 -6.966 17.161 Atomic orbital electron populations 1.21808 0.90024 1.04451 1.03668 1.23338 0.97317 0.79098 1.02501 1.86521 1.23159 1.33929 1.83684 1.23368 0.80861 0.91736 0.71631 1.90605 1.60926 1.43209 1.45453 1.20288 0.90160 0.89287 0.98550 0.86507 1.20103 1.00953 0.96595 0.94609 1.21238 0.99644 1.00411 0.92735 1.21391 0.98593 0.95750 0.98525 1.21531 0.98446 0.95123 0.98232 1.21440 0.99774 1.00621 0.92288 1.21210 0.97866 0.93801 1.00143 1.62134 1.01283 1.28219 1.32993 1.22467 1.00655 0.98255 0.89362 1.19368 0.94055 0.83363 0.93933 1.21432 0.93398 0.94015 1.47737 0.92432 1.25797 1.03563 0.94662 0.94951 1.70072 1.37592 0.99363 1.49767 0.85380 0.79243 0.78355 0.77922 1.19246 1.20202 1.20208 0.91314 0.91357 0.87811 0.91346 0.91446 0.86798 0.83549 0.82882 0.83573 0.85922 0.95420 0.92498 0.91277 1.00477 0.97218 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.29 71.98 0.74 -1.44 16 2 C 0.05 1.17 6.19 71.98 0.45 1.62 16 3 O -0.36 -10.83 10.14 -51.45 -0.52 -11.35 16 4 C 0.48 17.50 6.09 71.23 0.43 17.94 16 5 O -0.51 -20.94 14.34 21.96 0.31 -20.63 16 6 C 0.13 4.93 2.58 43.42 0.11 5.05 16 7 H 0.12 4.44 7.65 -2.38 -0.02 4.42 16 8 C -0.12 -4.23 3.88 -19.86 -0.08 -4.30 16 9 C -0.12 -3.88 6.74 22.27 0.15 -3.73 16 10 C -0.12 -3.25 10.05 22.27 0.22 -3.02 16 11 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 12 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 13 C -0.11 -3.60 9.67 22.27 0.22 -3.39 16 14 N -0.52 -24.26 4.39 -910.50 -4.00 -28.26 16 15 C 0.04 1.74 7.33 127.69 0.94 2.67 16 16 C 0.22 11.73 4.42 85.56 0.38 12.11 16 17 C -0.53 -30.57 8.57 25.60 0.22 -30.35 16 18 H 0.06 3.36 7.10 -2.91 -0.02 3.33 16 19 C 0.01 0.51 5.46 84.65 0.46 0.97 16 20 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 21 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.55 8.13 -2.38 -0.02 1.53 16 29 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 30 H 0.11 3.68 5.63 -2.91 -0.02 3.67 16 31 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.12 3.85 7.97 -2.91 -0.02 3.82 16 35 H 0.03 1.17 5.80 -2.39 -0.01 1.15 16 36 H 0.06 2.60 6.99 -2.39 -0.02 2.58 16 37 H 0.07 2.76 4.93 -2.39 -0.01 2.74 16 38 H -0.02 -1.29 7.74 -2.38 -0.02 -1.31 16 39 H 0.01 0.55 7.90 -2.39 -0.02 0.54 16 40 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.03 329.27 3.81 -65.21 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.02 Total: 14.60 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.69 Total: -11.48 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -3.72 Total: -83.31 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.21 Total: -31.98 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.03 3.81 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177183053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.290 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds