Wall clock time and date at job start Mon Mar 30 2020 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.46986 * 2 1 4 4 C 1.42906 * 114.00033 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46877 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.47097 * 65.00455 * 5 4 3 7 7 C 1.46497 * 119.99975 * 269.99732 * 6 5 4 8 8 C 1.34776 * 119.99901 * 89.99795 * 6 5 4 9 9 O 1.21550 * 120.00055 * 354.39903 * 8 6 5 10 10 C 1.47885 * 120.00100 * 174.39805 * 8 6 5 11 11 C 1.39921 * 120.02862 * 147.11862 * 10 8 6 12 12 C 1.38319 * 120.35965 * 180.02562 * 11 10 8 13 13 C 1.37757 * 120.41673 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.03610 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.17666 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00026 * 150.24419 * 15 14 13 17 17 C 1.39934 * 119.99987 * 330.24379 * 15 14 13 18 18 N 1.30829 * 120.00355 * 344.45338 * 17 15 14 19 19 Si 1.86806 * 119.99836 * 164.45904 * 17 15 14 20 20 H 1.48494 * 109.47497 * 59.99901 * 19 17 15 21 21 H 1.48507 * 109.46896 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46999 * 299.99478 * 19 17 15 23 23 C 1.38999 * 120.02088 * 327.14035 * 10 8 6 24 24 H 1.09007 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47253 * 299.99377 * 1 2 3 26 26 H 1.08997 * 109.47307 * 60.00033 * 1 2 3 27 27 H 1.09001 * 109.47253 * 240.00623 * 2 1 3 28 28 H 1.08994 * 109.47608 * 120.00403 * 2 1 3 29 29 H 1.08997 * 109.46714 * 60.00974 * 4 3 2 30 30 H 1.08999 * 109.47468 * 300.00533 * 4 3 2 31 31 H 1.09004 * 109.47288 * 305.00169 * 5 4 3 32 32 H 1.09003 * 109.46965 * 185.00573 * 5 4 3 33 33 H 1.08999 * 109.47035 * 269.09911 * 7 6 5 34 34 H 1.08997 * 109.47183 * 29.09513 * 7 6 5 35 35 H 1.08998 * 109.47042 * 149.10072 * 7 6 5 36 36 H 1.08005 * 119.81599 * 359.97438 * 11 10 8 37 37 H 1.08008 * 119.79620 * 180.02562 * 12 11 10 38 38 H 1.07997 * 119.98408 * 180.02562 * 13 12 11 39 39 H 0.96998 * 120.00059 * 179.97438 * 18 17 15 40 40 H 1.07990 * 120.20673 * 359.70208 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8252 2.9384 0.0012 6 7 3.3867 3.5603 1.2531 7 6 2.0567 4.1679 1.3425 8 6 4.2070 3.5735 2.3224 9 8 5.2680 2.9820 2.2818 10 6 3.8160 4.3077 3.5452 11 6 4.2081 3.8337 4.8019 12 6 3.8458 4.5147 5.9501 13 6 3.0956 5.6672 5.8700 14 6 2.6918 6.1593 4.6146 15 6 1.9219 7.3425 4.5289 16 1 2.0049 7.9791 3.6604 17 6 1.0527 7.6886 5.5695 18 7 0.7175 6.7966 6.4659 19 14 0.3707 9.4243 5.6786 20 1 -0.4026 9.7306 4.4484 21 1 -0.5197 9.5328 6.8621 22 1 1.4917 10.3891 5.8118 23 6 3.0584 5.4688 3.4469 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8339 0.9767 -0.8892 30 1 3.8333 0.9767 0.8907 31 1 3.3497 3.4417 -0.8407 32 1 4.9081 3.0256 -0.0881 33 1 2.1194 5.2214 1.0701 34 1 1.3770 3.6563 0.6611 35 1 1.6841 4.0781 2.3629 36 1 4.7962 2.9308 4.8759 37 1 4.1538 4.1409 6.9155 38 1 2.8170 6.1936 6.7710 39 1 0.1153 7.0366 7.1874 40 1 2.7573 5.8408 2.4788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179512962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:07 Heat of formation + Delta-G solvation = -78.478774 kcal Electronic energy + Delta-G solvation = -21441.446259 eV Core-core repulsion = 18220.424822 eV Total energy + Delta-G solvation = -3221.021437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20995 -39.18853 -38.66051 -36.57117 -35.48508 -32.99484 -31.81244 -31.65090 -29.91183 -27.65063 -27.10816 -24.87849 -23.67465 -23.05086 -22.55067 -20.71095 -19.00127 -17.96995 -17.61250 -17.23643 -17.10357 -16.73976 -16.56576 -16.34992 -15.32528 -15.20415 -14.89324 -14.60668 -14.34482 -13.93028 -13.83635 -13.60592 -13.49115 -13.27923 -12.88449 -12.83603 -12.79830 -12.60355 -12.47304 -12.25413 -12.22896 -11.98677 -11.94572 -11.34638 -11.03883 -10.80241 -10.53150 -9.69647 -9.42503 -9.34518 -8.61283 -6.35540 0.45914 0.94927 1.43178 1.51380 1.54722 1.92572 2.11266 2.25099 2.72992 2.79124 3.66169 3.73619 4.04827 4.12148 4.18801 4.28315 4.32572 4.41338 4.45726 4.48242 4.56416 4.57532 4.69388 4.82526 4.89484 4.97142 5.01842 5.03775 5.06353 5.16685 5.26976 5.32347 5.46355 5.63463 5.81616 5.97442 6.03804 6.21419 6.22965 6.37773 6.61724 6.92503 6.94447 7.16664 8.37881 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.004485 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.755642 B = 6241.660979 C = 6855.639469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.401 6.401 4 C 0.052 3.948 5 C 0.116 3.884 6 N -0.602 5.602 7 C 0.088 3.912 8 C 0.562 3.438 9 O -0.584 6.584 10 C -0.123 4.123 11 C -0.189 4.189 12 C -0.114 4.114 13 C -0.158 4.158 14 C 0.077 3.923 15 C -0.497 4.497 16 H 0.082 0.918 17 C 0.040 3.960 18 N -0.830 5.830 19 Si 0.979 3.021 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.263 1.263 23 C -0.186 4.186 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.028 0.972 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.288 0.712 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -7.063 -11.490 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 O -0.321 6.321 4 C -0.026 4.026 5 C -0.006 4.006 6 N -0.333 5.333 7 C -0.054 4.054 8 C 0.354 3.646 9 O -0.466 6.466 10 C -0.126 4.126 11 C -0.209 4.209 12 C -0.132 4.132 13 C -0.177 4.177 14 C 0.075 3.925 15 C -0.527 4.527 16 H 0.100 0.900 17 C -0.175 4.175 18 N -0.456 5.456 19 Si 0.800 3.200 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.187 1.187 23 C -0.205 4.205 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.969 -7.258 -11.346 13.612 hybrid contribution -0.090 0.310 0.620 0.699 sum -2.059 -6.948 -10.726 12.945 Atomic orbital electron populations 1.21743 0.92848 1.03264 1.02626 1.22615 0.96368 0.83176 1.00380 1.87860 1.21086 1.27665 1.95508 1.22900 0.81548 0.97366 1.00754 1.21716 1.01228 0.91821 0.85862 1.47702 1.16596 1.57295 1.11683 1.22092 0.82339 0.97800 1.03181 1.18773 0.83190 0.78970 0.83712 1.90627 1.25513 1.46906 1.83584 1.19589 1.02439 0.97891 0.92716 1.20602 1.06471 1.02236 0.91627 1.20872 0.98971 0.95949 0.97415 1.21426 1.00162 0.97902 0.98236 1.17886 0.90564 0.92680 0.91368 1.19728 1.21344 1.06580 1.05028 0.90011 1.26658 0.95040 1.02261 0.93563 1.69841 1.27475 1.36023 1.12296 0.85290 0.78510 0.77237 0.78931 1.18163 1.19614 1.18737 1.21756 1.03893 0.96121 0.98761 0.89258 0.93219 0.91511 0.91696 0.94382 0.89680 0.95320 0.87032 0.88860 0.91635 0.89053 0.92253 0.87890 0.86385 0.87872 0.90159 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.28 71.98 0.74 -1.82 16 2 C 0.05 1.02 6.66 71.98 0.48 1.50 16 3 O -0.40 -10.18 9.18 -148.98 -1.37 -11.55 16 4 C 0.05 1.27 6.28 71.98 0.45 1.72 16 5 C 0.12 3.02 5.77 86.38 0.50 3.51 16 6 N -0.60 -20.42 2.84 -850.16 -2.41 -22.83 16 7 C 0.09 2.77 8.63 127.77 1.10 3.87 16 8 C 0.56 23.88 7.38 86.80 0.64 24.52 16 9 O -0.58 -27.05 16.41 -3.87 -0.06 -27.11 16 10 C -0.12 -5.74 5.24 -20.13 -0.11 -5.84 16 11 C -0.19 -8.94 9.61 22.70 0.22 -8.72 16 12 C -0.11 -5.37 10.01 22.18 0.22 -5.14 16 13 C -0.16 -8.13 8.65 22.77 0.20 -7.93 16 14 C 0.08 4.01 5.51 -21.32 -0.12 3.89 16 15 C -0.50 -25.39 9.04 23.47 0.21 -25.18 16 16 H 0.08 3.97 7.89 -2.91 -0.02 3.94 16 17 C 0.04 1.91 5.14 85.25 0.44 2.35 16 18 N -0.83 -42.03 11.18 21.82 0.24 -41.78 16 19 Si 0.98 36.70 29.59 68.60 2.03 38.73 16 20 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 23 C -0.19 -8.74 7.42 23.01 0.17 -8.57 16 24 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 2.27 8.07 -2.38 -0.02 2.25 16 32 H 0.09 2.49 7.51 -2.39 -0.02 2.47 16 33 H 0.07 1.94 6.64 -2.39 -0.02 1.92 16 34 H 0.09 2.47 7.13 -2.39 -0.02 2.45 16 35 H 0.06 2.21 6.10 -2.39 -0.01 2.20 16 36 H 0.10 4.66 7.96 -2.91 -0.02 4.64 16 37 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.10 5.50 6.46 -2.91 -0.02 5.48 16 39 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 40 H 0.13 5.35 5.11 -2.92 -0.01 5.33 16 Total: -1.00 -62.24 332.34 4.61 -57.64 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 1.03 Total: 28.75 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 5.15 Total: -21.84 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -2.17 Total: -64.61 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.43 Total: -38.66 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -62.24 4.61 -57.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179512962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.843 kcal (2) G-P(sol) polarization free energy of solvation -62.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds