Wall clock time and date at job start Mon Mar 30 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99850 * 2 1 4 4 C 1.46899 * 110.99715 * 123.95294 * 2 1 3 5 5 H 1.08999 * 109.47223 * 299.99423 * 4 2 1 6 6 C 1.50706 * 109.47157 * 179.97438 * 4 2 1 7 7 O 1.20830 * 119.99594 * 340.00009 * 6 4 2 8 8 O 1.34222 * 120.00024 * 159.72293 * 6 4 2 9 9 C 1.45201 * 116.99867 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47142 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.47272 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99488 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00064 * 179.97438 * 11 10 9 14 14 N 1.31506 * 120.00054 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99721 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47343 * 60.00283 * 15 13 11 17 17 H 1.48500 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47223 * 299.99901 * 15 13 11 19 19 C 1.50696 * 109.47299 * 60.00113 * 4 2 1 20 20 C 1.38234 * 120.00449 * 39.72449 * 19 4 2 21 21 C 1.38232 * 120.00388 * 179.81043 * 20 19 4 22 22 C 1.38235 * 120.00053 * 0.40099 * 21 20 19 23 23 C 1.38238 * 119.99577 * 359.85232 * 22 21 20 24 24 C 1.38233 * 120.00167 * 359.95661 * 23 22 21 25 25 H 1.08997 * 109.47145 * 300.00043 * 1 2 3 26 26 H 1.08993 * 109.47101 * 60.00131 * 1 2 3 27 27 H 1.09002 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46765 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47025 * 299.99453 * 3 2 1 30 30 H 1.08990 * 109.47272 * 60.00173 * 3 2 1 31 31 H 1.09009 * 109.46864 * 300.00062 * 9 8 6 32 32 H 1.09001 * 109.47271 * 60.00074 * 9 8 6 33 33 H 1.09009 * 109.46963 * 299.99598 * 10 9 8 34 34 H 1.08997 * 109.47571 * 60.00140 * 10 9 8 35 35 H 0.97001 * 119.99887 * 179.97438 * 14 13 11 36 36 H 1.08004 * 119.99532 * 359.97438 * 20 19 4 37 37 H 1.08006 * 120.00093 * 180.22567 * 21 20 19 38 38 H 1.07998 * 120.00049 * 179.83154 * 22 21 20 39 39 H 1.08004 * 119.99428 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99795 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6460 -0.3200 2.0688 6 6 3.5020 -0.7441 1.1040 7 8 4.0795 -0.4833 0.0752 8 8 4.2020 -1.0088 2.2181 9 6 5.6496 -0.9692 2.1121 10 6 6.2698 -1.2952 3.4722 11 6 7.7722 -1.2548 3.3620 12 1 8.2381 -1.0204 2.4162 13 6 8.5519 -1.5170 4.4684 14 7 7.9846 -1.8028 5.6199 15 14 10.4143 -1.4675 4.3315 16 1 10.8434 -0.1119 3.9034 17 1 11.0162 -1.7838 5.6517 18 1 10.8638 -2.4681 3.3306 19 6 1.5122 -2.1907 1.0506 20 6 1.4549 -2.8275 -0.1750 21 6 1.0154 -4.1357 -0.2543 22 6 0.6253 -4.8045 0.8909 23 6 0.6777 -4.1659 2.1158 24 6 1.1210 -2.8590 2.1956 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.0852 1.3423 -0.0005 29 1 1.6460 1.8947 -0.8900 30 1 1.6460 1.8947 0.8899 31 1 5.9802 -1.7032 1.3770 32 1 5.9639 0.0262 1.7983 33 1 5.9392 -0.5615 4.2075 34 1 5.9556 -2.2908 3.7856 35 1 8.5332 -1.9876 6.3982 36 1 1.7560 -2.3038 -1.0703 37 1 0.9740 -4.6344 -1.2115 38 1 0.2794 -5.8257 0.8286 39 1 0.3726 -4.6883 3.0105 40 1 1.1623 -2.3603 3.1528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181982971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:59 Heat of formation + Delta-G solvation = -54.871614 kcal Electronic energy + Delta-G solvation = -21393.524425 eV Core-core repulsion = 18173.526671 eV Total energy + Delta-G solvation = -3219.997753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58632 -39.05221 -37.22537 -35.75641 -33.35649 -32.05837 -30.90504 -30.28320 -28.11386 -27.29336 -25.04286 -23.11548 -22.43748 -22.15308 -20.85503 -19.93538 -17.56952 -17.09112 -16.33385 -16.17640 -15.95914 -15.45510 -15.21442 -14.56280 -14.46851 -14.39913 -13.82152 -13.43492 -13.32754 -12.86179 -12.66401 -12.38674 -12.35364 -12.27304 -12.04497 -11.73893 -11.19654 -11.08505 -11.04181 -11.02097 -10.70768 -10.67857 -10.20414 -9.63973 -9.62541 -9.31991 -8.92123 -8.76094 -8.55526 -8.43966 -6.10143 -4.14579 1.21017 1.40313 2.55442 2.95362 3.30359 3.34238 3.37624 3.64475 4.01586 4.39494 4.56349 4.82399 4.97679 4.99319 5.12382 5.14501 5.18306 5.26015 5.26396 5.42784 5.48367 5.51285 5.59372 5.72412 5.88441 5.94372 6.04150 6.08627 6.10710 6.40319 6.46367 6.49017 6.63404 6.74818 6.81262 6.94611 7.01307 7.55869 7.62366 7.87004 8.20021 8.27909 8.90590 9.49753 11.01330 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.004118 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.728796 B = 6797.160984 C = 7645.057911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.524 5.524 3 C 0.013 3.987 4 C 0.134 3.866 5 H 0.081 0.919 6 C 0.463 3.537 7 O -0.495 6.495 8 O -0.355 6.355 9 C 0.076 3.924 10 C 0.026 3.974 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.086 4.086 20 C -0.084 4.084 21 C -0.128 4.128 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.098 4.098 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.600 -0.449 -9.161 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.249 5.249 3 C -0.135 4.135 4 C 0.025 3.975 5 H 0.099 0.901 6 C 0.304 3.696 7 O -0.383 6.383 8 O -0.271 6.271 9 C 0.004 3.996 10 C -0.011 4.011 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.087 4.087 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.116 4.116 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.166 -0.633 -9.682 20.595 hybrid contribution 0.913 0.429 0.693 1.224 sum -17.253 -0.205 -8.989 19.456 Atomic orbital electron populations 1.22446 0.86114 1.02765 1.00935 1.61706 1.08106 1.14327 1.40742 1.22613 1.02697 0.87444 1.00747 1.20028 0.89178 0.93453 0.94867 0.90150 1.23016 0.90272 0.73871 0.82423 1.90610 1.71600 1.43651 1.32433 1.86516 1.24361 1.79899 1.36338 1.23653 0.72070 1.00980 1.02900 1.19160 0.94667 0.98303 0.89018 1.20940 0.90287 1.49011 0.96278 0.92317 1.24970 0.99111 0.94846 0.95133 1.69960 1.35736 1.46774 1.00375 0.86534 0.84774 0.78712 0.77297 1.20060 1.21106 1.20049 1.19277 1.01502 0.93551 0.94342 1.21131 0.97068 0.94272 0.97768 1.21167 1.00118 0.94743 0.98580 1.21207 0.99473 0.99734 0.92822 1.21100 1.00441 0.94694 0.97862 1.21090 0.97657 0.95065 0.97807 0.95353 0.90777 0.90748 0.89721 0.90714 0.95521 0.92307 0.92343 0.95412 0.95346 0.92661 0.84844 0.85989 0.86130 0.85782 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.26 60.07 0.56 0.80 16 2 N -0.52 -6.65 3.93 -246.01 -0.97 -7.61 16 3 C 0.01 0.15 9.19 60.06 0.55 0.71 16 4 C 0.13 1.91 2.19 -70.02 -0.15 1.76 16 5 H 0.08 1.05 8.00 -51.93 -0.42 0.63 16 6 C 0.46 8.49 6.32 36.01 0.23 8.71 16 7 O -0.50 -10.02 14.46 -18.75 -0.27 -10.29 16 8 O -0.36 -7.35 10.22 -39.24 -0.40 -7.75 16 9 C 0.08 1.74 5.40 37.16 0.20 1.94 16 10 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 11 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 12 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 15 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.09 -1.16 3.72 -104.63 -0.39 -1.55 16 20 C -0.08 -1.09 8.41 -39.58 -0.33 -1.42 16 21 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 22 C -0.11 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 24 C -0.10 -1.22 9.67 -39.58 -0.38 -1.60 16 25 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.72 6.36 -51.93 -0.33 0.39 16 28 H 0.08 1.26 5.69 -51.92 -0.30 0.96 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 33 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 1.78 7.71 -52.48 -0.40 1.38 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.13 1.44 8.04 -52.48 -0.42 1.02 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -31.51 338.13 -8.36 -39.87 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.06 Total: -1.17 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.48 Total: -8.91 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: -0.23 Total: -33.33 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.67 Total: -18.04 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.51 -8.36 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181982971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.998 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds