Wall clock time and date at job start Mon Mar 30 2020 01:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99850 * 2 1 4 4 C 1.46899 * 110.99715 * 123.95294 * 2 1 3 5 5 H 1.08999 * 109.47223 * 299.99423 * 4 2 1 6 6 C 1.50706 * 109.47157 * 179.97438 * 4 2 1 7 7 O 1.20830 * 119.99594 * 340.00009 * 6 4 2 8 8 O 1.34222 * 120.00024 * 159.72293 * 6 4 2 9 9 C 1.45201 * 116.99867 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47142 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.47272 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99488 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00064 * 179.97438 * 11 10 9 14 14 N 1.31506 * 120.00054 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99721 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47343 * 60.00283 * 15 13 11 17 17 H 1.48500 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47223 * 299.99901 * 15 13 11 19 19 C 1.50696 * 109.47299 * 60.00113 * 4 2 1 20 20 C 1.38234 * 120.00449 * 39.72449 * 19 4 2 21 21 C 1.38232 * 120.00388 * 179.81043 * 20 19 4 22 22 C 1.38235 * 120.00053 * 0.40099 * 21 20 19 23 23 C 1.38238 * 119.99577 * 359.85232 * 22 21 20 24 24 C 1.38233 * 120.00167 * 359.95661 * 23 22 21 25 25 H 1.08997 * 109.47145 * 300.00043 * 1 2 3 26 26 H 1.08993 * 109.47101 * 60.00131 * 1 2 3 27 27 H 1.09002 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46765 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47025 * 299.99453 * 3 2 1 30 30 H 1.08990 * 109.47272 * 60.00173 * 3 2 1 31 31 H 1.09009 * 109.46864 * 300.00062 * 9 8 6 32 32 H 1.09001 * 109.47271 * 60.00074 * 9 8 6 33 33 H 1.09009 * 109.46963 * 299.99598 * 10 9 8 34 34 H 1.08997 * 109.47571 * 60.00140 * 10 9 8 35 35 H 0.97001 * 119.99887 * 179.97438 * 14 13 11 36 36 H 1.08004 * 119.99532 * 359.97438 * 20 19 4 37 37 H 1.08006 * 120.00093 * 180.22567 * 21 20 19 38 38 H 1.07998 * 120.00049 * 179.83154 * 22 21 20 39 39 H 1.08004 * 119.99428 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99795 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6460 -0.3200 2.0688 6 6 3.5020 -0.7441 1.1040 7 8 4.0795 -0.4833 0.0752 8 8 4.2020 -1.0088 2.2181 9 6 5.6496 -0.9692 2.1121 10 6 6.2698 -1.2952 3.4722 11 6 7.7722 -1.2548 3.3620 12 1 8.2381 -1.0204 2.4162 13 6 8.5519 -1.5170 4.4684 14 7 7.9846 -1.8028 5.6199 15 14 10.4143 -1.4675 4.3315 16 1 10.8434 -0.1119 3.9034 17 1 11.0162 -1.7838 5.6517 18 1 10.8638 -2.4681 3.3306 19 6 1.5122 -2.1907 1.0506 20 6 1.4549 -2.8275 -0.1750 21 6 1.0154 -4.1357 -0.2543 22 6 0.6253 -4.8045 0.8909 23 6 0.6777 -4.1659 2.1158 24 6 1.1210 -2.8590 2.1956 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.0852 1.3423 -0.0005 29 1 1.6460 1.8947 -0.8900 30 1 1.6460 1.8947 0.8899 31 1 5.9802 -1.7032 1.3770 32 1 5.9639 0.0262 1.7983 33 1 5.9392 -0.5615 4.2075 34 1 5.9556 -2.2908 3.7856 35 1 8.5332 -1.9876 6.3982 36 1 1.7560 -2.3038 -1.0703 37 1 0.9740 -4.6344 -1.2115 38 1 0.2794 -5.8257 0.8286 39 1 0.3726 -4.6883 3.0105 40 1 1.1623 -2.3603 3.1528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181982971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:58 Heat of formation + Delta-G solvation = -72.511975 kcal Electronic energy + Delta-G solvation = -21394.289368 eV Core-core repulsion = 18173.526671 eV Total energy + Delta-G solvation = -3220.762697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93470 -40.18144 -38.39876 -37.22707 -35.47550 -33.10227 -32.25312 -31.79269 -29.17307 -28.25616 -27.00357 -24.22584 -23.54177 -23.23748 -22.69422 -21.18950 -19.11559 -18.28483 -18.14956 -17.66508 -17.26468 -16.58542 -16.52788 -16.33646 -15.41950 -15.33753 -15.08108 -14.95373 -14.38329 -14.25744 -14.07848 -13.80116 -13.44455 -13.24591 -13.18602 -13.02858 -12.89672 -12.69219 -12.60122 -12.43859 -12.04761 -11.93047 -11.83084 -11.55091 -11.49149 -11.34074 -10.62307 -9.82210 -9.71659 -9.50425 -8.28095 -6.41778 0.26518 0.50243 1.10913 1.39709 1.44009 1.50611 1.58820 2.38622 2.70276 3.00019 3.06180 3.53085 3.69980 3.82983 4.09666 4.16966 4.18613 4.21105 4.26611 4.31082 4.37623 4.59524 4.62282 4.64848 4.65165 4.70460 4.95042 4.99564 5.00784 5.16489 5.21457 5.43109 5.48484 5.53041 5.54348 5.61430 5.71167 5.77997 5.93452 6.04488 6.08341 6.68015 6.72494 7.28042 8.84319 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.004118 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.728796 B = 6797.160984 C = 7645.057911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.535 5.535 3 C 0.014 3.986 4 C 0.144 3.856 5 H 0.091 0.909 6 C 0.460 3.540 7 O -0.516 6.516 8 O -0.364 6.364 9 C 0.092 3.908 10 C 0.033 3.967 11 C -0.553 4.553 12 H 0.064 0.936 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.973 3.027 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.266 1.266 19 C -0.103 4.103 20 C -0.097 4.097 21 C -0.131 4.131 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.112 4.112 25 H 0.038 0.962 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.007 0.993 34 H 0.005 0.995 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.249 -1.015 -9.823 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.261 5.261 3 C -0.134 4.134 4 C 0.034 3.966 5 H 0.108 0.892 6 C 0.303 3.697 7 O -0.405 6.405 8 O -0.280 6.280 9 C 0.019 3.981 10 C -0.004 4.004 11 C -0.590 4.590 12 H 0.082 0.918 13 C -0.191 4.191 14 N -0.564 5.564 15 Si 0.796 3.204 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.191 1.191 19 C -0.103 4.103 20 C -0.116 4.116 21 C -0.148 4.148 22 C -0.130 4.130 23 C -0.145 4.145 24 C -0.130 4.130 25 H 0.057 0.943 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.077 0.923 36 H 0.141 0.859 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.843 -1.193 -10.361 21.537 hybrid contribution 1.010 0.573 0.872 1.452 sum -17.834 -0.621 -9.488 20.210 Atomic orbital electron populations 1.22492 0.83919 1.03184 1.02238 1.61723 1.09952 1.14324 1.40072 1.22585 1.00771 0.87688 1.02330 1.20037 0.85669 0.94814 0.96076 0.89152 1.23936 0.91883 0.72579 0.81279 1.90591 1.72404 1.44533 1.32946 1.86509 1.23071 1.80536 1.37920 1.23168 0.73680 1.00811 1.00421 1.18960 0.94683 0.96286 0.90451 1.21329 0.91329 1.49532 0.96848 0.91779 1.25946 1.04598 0.93977 0.94552 1.70083 1.37878 1.47274 1.01212 0.85383 0.78045 0.79236 0.77697 1.19014 1.20321 1.19111 1.19292 1.02798 0.93182 0.95069 1.21151 0.97975 0.95229 0.97197 1.21461 0.99294 0.94071 1.00010 1.21583 0.98275 1.00927 0.92203 1.21434 0.99701 0.94200 0.99153 1.21278 0.98139 0.95932 0.97692 0.94337 0.89042 0.90800 0.92835 0.88703 0.94369 0.92590 0.92121 0.97443 0.97641 0.92278 0.85894 0.83837 0.83255 0.83632 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.26 127.69 1.18 1.68 16 2 N -0.54 -13.20 3.93 -932.22 -3.66 -16.86 16 3 C 0.01 0.33 9.19 127.69 1.17 1.50 16 4 C 0.14 4.07 2.19 43.42 0.10 4.16 16 5 H 0.09 2.33 8.00 -2.39 -0.02 2.31 16 6 C 0.46 17.21 6.32 71.24 0.45 17.66 16 7 O -0.52 -21.38 14.46 21.95 0.32 -21.06 16 8 O -0.36 -15.49 10.22 -51.34 -0.52 -16.01 16 9 C 0.09 4.33 5.40 71.98 0.39 4.72 16 10 C 0.03 1.83 5.35 29.85 0.16 1.99 16 11 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 12 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 13 C 0.01 0.49 5.46 84.66 0.46 0.95 16 14 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 15 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 C -0.10 -2.72 3.72 -19.87 -0.07 -2.80 16 20 C -0.10 -2.44 8.41 22.27 0.19 -2.26 16 21 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 22 C -0.11 -2.07 10.05 22.27 0.22 -1.85 16 23 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.11 -2.70 9.67 22.27 0.22 -2.48 16 25 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.32 6.36 -2.39 -0.02 1.31 16 28 H 0.05 1.61 5.69 -2.38 -0.01 1.60 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 32 H 0.06 2.79 8.13 -2.39 -0.02 2.77 16 33 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.12 3.29 7.71 -2.91 -0.02 3.26 16 37 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.13 2.92 8.04 -2.91 -0.02 2.90 16 Total: -1.00 -68.24 338.13 4.59 -63.64 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.01 Total: 12.89 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 5.15 Total: -13.09 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -3.38 Total: -72.26 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.21 Total: -37.07 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.24 4.59 -63.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181982971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.868 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds