Wall clock time and date at job start Mon Mar 30 2020 01:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 111.00105 * 2 1 4 4 C 1.46900 * 111.00224 * 123.95983 * 2 1 3 5 5 H 1.08996 * 109.46907 * 301.25043 * 4 2 1 6 6 C 1.50699 * 109.47226 * 61.25093 * 4 2 1 7 7 O 1.20820 * 119.99904 * 27.85445 * 6 4 2 8 8 O 1.34230 * 119.99644 * 207.85470 * 6 4 2 9 9 C 1.45206 * 116.99795 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.47309 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47199 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99671 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99734 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99663 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00205 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47111 * 90.00024 * 15 13 11 17 17 H 1.48503 * 109.47221 * 210.00133 * 15 13 11 18 18 H 1.48501 * 109.47019 * 330.00054 * 15 13 11 19 19 C 1.50700 * 109.47091 * 181.25214 * 4 2 1 20 20 C 1.38241 * 120.00302 * 313.11774 * 19 4 2 21 21 C 1.38227 * 120.00153 * 179.79125 * 20 19 4 22 22 C 1.38238 * 120.00003 * 0.43668 * 21 20 19 23 23 C 1.38233 * 120.00041 * 359.81679 * 22 21 20 24 24 C 1.38231 * 119.99767 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47319 * 299.99450 * 1 2 3 26 26 H 1.09000 * 109.47575 * 59.99775 * 1 2 3 27 27 H 1.09008 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47337 * 185.04404 * 3 2 1 29 29 H 1.08995 * 109.47354 * 305.05343 * 3 2 1 30 30 H 1.09001 * 109.46680 * 65.05352 * 3 2 1 31 31 H 1.09002 * 109.47024 * 300.00411 * 9 8 6 32 32 H 1.09006 * 109.46822 * 59.99739 * 9 8 6 33 33 H 1.09004 * 109.47338 * 300.00756 * 10 9 8 34 34 H 1.09009 * 109.46856 * 59.99818 * 10 9 8 35 35 H 0.96997 * 119.99675 * 180.02562 * 14 13 11 36 36 H 1.07998 * 119.99403 * 359.97438 * 20 19 4 37 37 H 1.08008 * 119.99921 * 180.27288 * 21 20 19 38 38 H 1.08007 * 119.99506 * 179.83475 * 22 21 20 39 39 H 1.08000 * 119.99806 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99922 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.6279 -0.3336 2.0680 6 6 1.5375 -2.1981 1.0338 7 8 1.3030 -2.6804 -0.0489 8 8 1.3902 -2.9376 2.1443 9 6 0.9453 -4.3087 1.9689 10 6 0.8371 -4.9884 3.3353 11 6 0.3748 -6.4112 3.1534 12 1 0.1783 -6.7925 2.1622 13 6 0.2028 -7.2260 4.2523 14 7 -0.2002 -8.4678 4.0934 15 14 0.5420 -6.5661 5.9666 16 1 -0.6999 -5.9722 6.5231 17 1 0.9961 -7.6755 6.8431 18 1 1.5998 -5.5262 5.8963 19 6 3.5016 -0.7179 1.1215 20 6 4.1883 -0.9548 -0.0546 21 6 5.5697 -0.9063 -0.0702 22 6 6.2647 -0.6299 1.0924 23 6 5.5782 -0.3982 2.2696 24 6 4.1967 -0.4424 2.2842 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0813 1.3438 -0.0904 29 1 1.5746 1.9221 -0.8412 30 1 1.7209 1.8659 0.9318 31 1 -0.0296 -4.3148 1.4814 32 1 1.6638 -4.8476 1.3512 33 1 1.8122 -4.9822 3.8225 34 1 0.1188 -4.4495 3.9533 35 1 -0.3216 -9.0409 4.8665 36 1 3.6454 -1.1747 -0.9619 37 1 6.1060 -1.0870 -0.9900 38 1 7.3441 -0.5947 1.0807 39 1 6.1213 -0.1827 3.1779 40 1 3.6603 -0.2610 3.2039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181982990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:01 Heat of formation + Delta-G solvation = -53.025622 kcal Electronic energy + Delta-G solvation = -21427.734400 eV Core-core repulsion = 18207.816695 eV Total energy + Delta-G solvation = -3219.917705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.64519 -39.13974 -37.27937 -35.87611 -33.32308 -32.11407 -30.99547 -30.74653 -28.25389 -27.37261 -25.22825 -23.12825 -22.56311 -22.15470 -20.65676 -19.99205 -17.66563 -17.19043 -16.70733 -16.32027 -16.03029 -15.52080 -15.32648 -14.53526 -14.51687 -14.23474 -13.96536 -13.52042 -13.40686 -12.97994 -12.83678 -12.61455 -12.43981 -12.31226 -12.14496 -11.81843 -11.44893 -11.30327 -11.14489 -11.13328 -10.68348 -10.55706 -9.98942 -9.93117 -9.69789 -9.35555 -9.01073 -8.85606 -8.62704 -8.61202 -6.13259 -4.14363 1.12123 1.31590 2.49281 2.87130 3.27108 3.34516 3.39125 3.56140 3.97104 4.38164 4.47207 4.72497 4.89165 4.92627 5.02660 5.05228 5.12161 5.17703 5.20298 5.34142 5.41557 5.42413 5.51298 5.68632 5.79827 5.82106 5.95634 5.96453 5.97886 6.31583 6.38548 6.41045 6.44536 6.65714 6.72246 6.80761 6.88189 7.18657 7.22082 7.62165 8.16585 8.39540 8.88523 9.46332 10.99369 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.004404 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.142543 B = 6356.468705 C = 7112.937039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.524 5.524 3 C 0.026 3.974 4 C 0.135 3.865 5 H 0.079 0.921 6 C 0.463 3.537 7 O -0.490 6.490 8 O -0.361 6.361 9 C 0.084 3.916 10 C -0.009 4.009 11 C -0.527 4.527 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.880 3.120 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.263 1.263 19 C -0.087 4.087 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.100 4.100 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.145 22.001 -5.541 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.249 5.249 3 C -0.121 4.121 4 C 0.026 3.974 5 H 0.097 0.903 6 C 0.304 3.696 7 O -0.376 6.376 8 O -0.278 6.278 9 C 0.011 3.989 10 C -0.046 4.046 11 C -0.565 4.565 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.707 3.293 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.188 1.188 19 C -0.088 4.088 20 C -0.101 4.101 21 C -0.144 4.144 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.118 4.118 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.152 21.394 -6.187 24.078 hybrid contribution -0.249 0.386 1.581 1.647 sum 8.902 21.780 -4.606 23.976 Atomic orbital electron populations 1.22514 0.86169 1.03266 1.01034 1.61701 1.08613 1.13794 1.40774 1.22431 1.01528 0.87442 1.00730 1.20029 0.92775 0.89786 0.94832 0.90303 1.23000 0.74960 0.88560 0.83109 1.90638 1.45476 1.72533 1.28980 1.86478 1.77788 1.27960 1.35537 1.23389 0.98964 0.74929 1.01594 1.19623 0.97931 0.95841 0.91223 1.20841 1.46274 0.93610 0.95779 0.90633 1.24930 0.94189 0.94608 0.99226 1.69897 1.46286 1.06424 1.30882 0.86761 0.79376 0.78945 0.84198 1.20055 1.21131 1.18767 1.19270 0.92167 1.02733 0.94588 1.21156 0.94027 0.96718 0.98202 1.21185 0.94152 1.00635 0.98454 1.21218 0.99906 0.99061 0.92955 1.21088 0.93958 1.00882 0.98244 1.21071 0.94535 0.98948 0.97294 0.95248 0.90483 0.90655 0.90694 0.90781 0.95330 0.91723 0.91677 0.95383 0.95873 0.92430 0.84804 0.85868 0.86058 0.85811 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.29 60.06 0.56 0.76 16 2 N -0.52 -6.38 4.15 -246.01 -1.02 -7.40 16 3 C 0.03 0.24 9.14 60.06 0.55 0.79 16 4 C 0.14 1.84 2.18 -70.02 -0.15 1.68 16 5 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 6 C 0.46 8.19 5.97 36.00 0.21 8.40 16 7 O -0.49 -9.75 15.44 -18.74 -0.29 -10.04 16 8 O -0.36 -7.10 10.22 -39.26 -0.40 -7.50 16 9 C 0.08 1.84 5.40 37.15 0.20 2.04 16 10 C -0.01 -0.21 4.42 -27.89 -0.12 -0.34 16 11 C -0.53 -15.11 9.66 -34.44 -0.33 -15.45 16 12 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 15 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 19 C -0.09 -1.11 3.56 -104.62 -0.37 -1.48 16 20 C -0.08 -1.03 8.34 -39.58 -0.33 -1.36 16 21 C -0.13 -1.34 10.05 -39.59 -0.40 -1.74 16 22 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 24 C -0.10 -1.14 9.67 -39.59 -0.38 -1.52 16 25 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.04 6.40 -51.92 -0.33 0.71 16 28 H 0.07 0.70 6.35 -51.93 -0.33 0.37 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 32 H 0.06 1.45 8.13 -51.93 -0.42 1.03 16 33 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 34 H 0.02 0.55 7.57 -51.92 -0.39 0.16 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.13 1.78 7.93 -52.49 -0.42 1.37 16 37 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.25 7.99 -52.48 -0.42 0.83 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -32.19 335.91 -8.07 -40.27 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.07 Total: -1.17 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.46 Total: -9.36 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.25 Total: -34.10 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.69 Total: -17.54 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.19 -8.07 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181982990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.758 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds