Wall clock time and date at job start Mon Mar 30 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 111.00105 * 2 1 4 4 C 1.46900 * 111.00224 * 123.95983 * 2 1 3 5 5 H 1.08996 * 109.46907 * 301.25043 * 4 2 1 6 6 C 1.50699 * 109.47226 * 61.25093 * 4 2 1 7 7 O 1.20820 * 119.99904 * 27.85445 * 6 4 2 8 8 O 1.34230 * 119.99644 * 207.85470 * 6 4 2 9 9 C 1.45206 * 116.99795 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.47309 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47199 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99671 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99734 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99663 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00205 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47111 * 90.00024 * 15 13 11 17 17 H 1.48503 * 109.47221 * 210.00133 * 15 13 11 18 18 H 1.48501 * 109.47019 * 330.00054 * 15 13 11 19 19 C 1.50700 * 109.47091 * 181.25214 * 4 2 1 20 20 C 1.38241 * 120.00302 * 313.11774 * 19 4 2 21 21 C 1.38227 * 120.00153 * 179.79125 * 20 19 4 22 22 C 1.38238 * 120.00003 * 0.43668 * 21 20 19 23 23 C 1.38233 * 120.00041 * 359.81679 * 22 21 20 24 24 C 1.38231 * 119.99767 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47319 * 299.99450 * 1 2 3 26 26 H 1.09000 * 109.47575 * 59.99775 * 1 2 3 27 27 H 1.09008 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47337 * 185.04404 * 3 2 1 29 29 H 1.08995 * 109.47354 * 305.05343 * 3 2 1 30 30 H 1.09001 * 109.46680 * 65.05352 * 3 2 1 31 31 H 1.09002 * 109.47024 * 300.00411 * 9 8 6 32 32 H 1.09006 * 109.46822 * 59.99739 * 9 8 6 33 33 H 1.09004 * 109.47338 * 300.00756 * 10 9 8 34 34 H 1.09009 * 109.46856 * 59.99818 * 10 9 8 35 35 H 0.96997 * 119.99675 * 180.02562 * 14 13 11 36 36 H 1.07998 * 119.99403 * 359.97438 * 20 19 4 37 37 H 1.08008 * 119.99921 * 180.27288 * 21 20 19 38 38 H 1.08007 * 119.99506 * 179.83475 * 22 21 20 39 39 H 1.08000 * 119.99806 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99922 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.6279 -0.3336 2.0680 6 6 1.5375 -2.1981 1.0338 7 8 1.3030 -2.6804 -0.0489 8 8 1.3902 -2.9376 2.1443 9 6 0.9453 -4.3087 1.9689 10 6 0.8371 -4.9884 3.3353 11 6 0.3748 -6.4112 3.1534 12 1 0.1783 -6.7925 2.1622 13 6 0.2028 -7.2260 4.2523 14 7 -0.2002 -8.4678 4.0934 15 14 0.5420 -6.5661 5.9666 16 1 -0.6999 -5.9722 6.5231 17 1 0.9961 -7.6755 6.8431 18 1 1.5998 -5.5262 5.8963 19 6 3.5016 -0.7179 1.1215 20 6 4.1883 -0.9548 -0.0546 21 6 5.5697 -0.9063 -0.0702 22 6 6.2647 -0.6299 1.0924 23 6 5.5782 -0.3982 2.2696 24 6 4.1967 -0.4424 2.2842 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0813 1.3438 -0.0904 29 1 1.5746 1.9221 -0.8412 30 1 1.7209 1.8659 0.9318 31 1 -0.0296 -4.3148 1.4814 32 1 1.6638 -4.8476 1.3512 33 1 1.8122 -4.9822 3.8225 34 1 0.1188 -4.4495 3.9533 35 1 -0.3216 -9.0409 4.8665 36 1 3.6454 -1.1747 -0.9619 37 1 6.1060 -1.0870 -0.9900 38 1 7.3441 -0.5947 1.0807 39 1 6.1213 -0.1827 3.1779 40 1 3.6603 -0.2610 3.2039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181982990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:00 Heat of formation + Delta-G solvation = -72.240706 kcal Electronic energy + Delta-G solvation = -21428.567628 eV Core-core repulsion = 18207.816695 eV Total energy + Delta-G solvation = -3220.750934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92310 -40.20624 -38.35921 -37.30563 -35.42267 -33.16631 -32.62513 -31.80655 -29.26541 -28.26700 -27.10350 -24.12485 -23.52251 -23.21285 -22.54811 -21.16838 -19.31967 -18.53840 -18.18196 -17.67351 -17.26547 -16.58931 -16.38458 -16.31114 -15.44684 -15.35098 -15.22633 -14.98442 -14.65846 -14.26871 -14.05079 -13.80166 -13.53194 -13.27798 -13.19541 -13.12804 -12.97497 -12.64850 -12.47187 -12.45570 -12.01953 -11.94206 -11.82984 -11.59036 -11.48286 -11.44842 -10.82853 -9.83380 -9.73989 -9.48600 -8.35983 -6.44583 0.25365 0.49263 1.11481 1.36738 1.38731 1.51115 1.53509 2.33155 2.69419 2.98722 3.01247 3.49706 3.68535 3.81235 4.08903 4.11671 4.14939 4.17657 4.24283 4.30095 4.36896 4.57168 4.57935 4.61967 4.64294 4.69586 4.90438 4.96895 5.00107 5.02189 5.15587 5.24770 5.45056 5.50474 5.52428 5.53203 5.60899 5.77279 5.92079 6.07262 6.13670 6.61113 6.69259 7.20561 8.80240 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.004404 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.142543 B = 6356.468705 C = 7112.937039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.030 3.970 4 C 0.145 3.855 5 H 0.095 0.905 6 C 0.461 3.539 7 O -0.518 6.518 8 O -0.361 6.361 9 C 0.095 3.905 10 C -0.001 4.001 11 C -0.544 4.544 12 H 0.034 0.966 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.954 3.046 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.245 1.245 19 C -0.103 4.103 20 C -0.100 4.100 21 C -0.132 4.132 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.108 4.108 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.271 0.729 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.765 24.685 -3.768 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.116 4.116 4 C 0.036 3.964 5 H 0.112 0.888 6 C 0.303 3.697 7 O -0.406 6.406 8 O -0.278 6.278 9 C 0.022 3.978 10 C -0.039 4.039 11 C -0.582 4.582 12 H 0.052 0.948 13 C -0.185 4.185 14 N -0.583 5.583 15 Si 0.776 3.224 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.168 1.168 19 C -0.104 4.104 20 C -0.118 4.118 21 C -0.150 4.150 22 C -0.129 4.129 23 C -0.142 4.142 24 C -0.127 4.127 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.777 24.109 -4.435 26.778 hybrid contribution -0.723 -0.452 0.890 1.233 sum 10.054 23.657 -3.545 25.948 Atomic orbital electron populations 1.22502 0.85980 1.01696 1.02690 1.61683 1.08959 1.15440 1.40456 1.22460 1.01362 0.85785 1.02023 1.20052 0.93622 0.86692 0.96080 0.88756 1.24000 0.73732 0.89902 0.82079 1.90621 1.46690 1.73407 1.29861 1.86465 1.78001 1.26629 1.36670 1.22947 0.98423 0.76461 0.99998 1.19450 0.98143 0.93633 0.92636 1.21096 1.46715 0.96056 0.94319 0.94765 1.25947 0.93602 0.94664 1.04262 1.70042 1.47525 1.08109 1.32633 0.85611 0.80184 0.78827 0.77815 1.18618 1.20447 1.16799 1.19286 0.91471 1.04294 0.95339 1.21124 0.94994 0.98032 0.97681 1.21433 0.93495 1.00226 0.99804 1.21587 1.01379 0.97627 0.92354 1.21452 0.93600 0.99795 0.99394 1.21304 0.95363 0.98840 0.97168 0.93677 0.88753 0.93754 0.90931 0.89262 0.94064 0.92421 0.92865 0.94727 0.94627 0.91988 0.86642 0.84238 0.83309 0.83264 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.29 127.69 1.19 1.61 16 2 N -0.54 -12.67 4.15 -932.24 -3.87 -16.54 16 3 C 0.03 0.50 9.14 127.69 1.17 1.67 16 4 C 0.14 3.81 2.18 43.42 0.09 3.90 16 5 H 0.09 2.14 7.94 -2.39 -0.02 2.12 16 6 C 0.46 16.39 5.97 71.24 0.42 16.81 16 7 O -0.52 -21.32 15.44 21.98 0.34 -20.98 16 8 O -0.36 -14.11 10.22 -51.42 -0.53 -14.63 16 9 C 0.10 4.25 5.40 71.98 0.39 4.64 16 10 C 0.00 -0.06 4.42 29.85 0.13 0.07 16 11 C -0.54 -31.96 9.66 25.60 0.25 -31.72 16 12 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 13 C 0.01 0.78 5.47 84.66 0.46 1.25 16 14 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 15 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 19 C -0.10 -2.51 3.56 -19.86 -0.07 -2.58 16 20 C -0.10 -2.44 8.34 22.27 0.19 -2.26 16 21 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 22 C -0.11 -1.86 10.05 22.27 0.22 -1.63 16 23 C -0.12 -2.13 10.05 22.27 0.22 -1.90 16 24 C -0.11 -2.21 9.67 22.27 0.22 -2.00 16 25 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.25 6.40 -2.38 -0.02 1.23 16 28 H 0.07 1.24 6.35 -2.39 -0.02 1.23 16 29 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 32 H 0.05 2.47 8.13 -2.38 -0.02 2.45 16 33 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 34 H 0.04 1.64 7.57 -2.38 -0.02 1.62 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.12 3.18 7.93 -2.91 -0.02 3.15 16 37 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.14 2.37 7.99 -2.91 -0.02 2.35 16 Total: -1.00 -71.03 335.91 4.19 -66.84 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.95 Total: 13.10 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.11 Total: -14.50 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -3.57 Total: -75.23 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.19 Total: -35.61 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -71.03 4.19 -66.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181982990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.396 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds