Wall clock time and date at job start Mon Mar 30 2020 01:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 117.00047 * 2 1 4 4 O 1.21472 * 120.00302 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99804 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.15174 * 5.67122 * 5 3 2 7 7 C 1.37918 * 119.84781 * 180.31560 * 6 5 3 8 8 C 1.38389 * 120.15089 * 359.66867 * 7 6 5 9 9 C 1.38351 * 120.30296 * 359.97438 * 8 7 6 10 10 C 1.37962 * 120.14913 * 0.04936 * 9 8 7 11 11 C 1.50702 * 120.07872 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47106 * 98.63857 * 11 10 9 13 13 N 1.46896 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00126 * 66.04749 * 13 12 11 15 15 C 1.46893 * 111.00162 * 190.00108 * 13 12 11 16 16 C 1.50706 * 109.47263 * 169.99752 * 15 13 12 17 17 H 1.07997 * 120.00094 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99752 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00483 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99601 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47272 * 89.99903 * 20 18 16 22 22 H 1.48504 * 109.47157 * 209.99749 * 20 18 16 23 23 H 1.48501 * 109.47219 * 329.99297 * 20 18 16 24 24 H 1.09001 * 109.47047 * 60.00205 * 1 2 3 25 25 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46707 * 300.00326 * 1 2 3 27 27 H 1.07999 * 120.07403 * 359.97438 * 6 5 3 28 28 H 1.08003 * 119.92693 * 179.67787 * 7 6 5 29 29 H 1.07998 * 119.85112 * 180.02562 * 8 7 6 30 30 H 1.07996 * 119.92620 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47229 * 218.64549 * 11 10 9 32 32 H 1.09004 * 109.46629 * 338.64019 * 11 10 9 33 33 H 1.09000 * 109.47189 * 300.00721 * 12 11 10 34 34 H 1.09005 * 109.46780 * 60.00276 * 12 11 10 35 35 H 1.08995 * 109.47055 * 59.99796 * 14 13 12 36 36 H 1.09004 * 109.47270 * 180.02562 * 14 13 12 37 37 H 1.09011 * 109.47063 * 300.00052 * 14 13 12 38 38 H 1.09000 * 109.47034 * 290.00130 * 15 13 12 39 39 H 1.09006 * 109.47299 * 50.00248 * 15 13 12 40 40 H 0.96998 * 120.00589 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3022 0.1142 -0.1204 7 6 5.6791 0.1930 -0.1137 8 6 6.3045 1.4218 0.0046 9 6 5.5544 2.5789 0.1163 10 6 4.1763 2.5146 0.1114 11 6 3.3608 3.7760 0.2338 12 6 2.9013 4.2229 -1.1555 13 7 2.1069 5.4528 -1.0363 14 6 2.9352 6.5710 -0.5657 15 6 1.4522 5.7821 -2.3093 16 6 0.4605 6.8957 -2.0910 17 1 0.3295 7.3165 -1.1050 18 6 -0.2802 7.3766 -3.1498 19 7 -0.1210 6.8640 -4.3504 20 14 -1.5088 8.7575 -2.8793 21 1 -0.8350 10.0657 -3.0786 22 1 -2.6258 8.6232 -3.8486 23 1 -2.0424 8.6812 -1.4955 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 3.8154 -0.8454 -0.2127 28 1 6.2707 -0.7064 -0.2011 29 1 7.3830 1.4779 0.0089 30 1 6.0488 3.5347 0.2079 31 1 2.4899 3.5862 0.8611 32 1 3.9695 4.5597 0.6848 33 1 3.7723 4.4127 -1.7827 34 1 2.2926 3.4391 -1.6064 35 1 3.7457 6.7456 -1.2732 36 1 2.3223 7.4688 -0.4859 37 1 3.3522 6.3281 0.4118 38 1 2.2031 6.1007 -3.0323 39 1 0.9325 4.9022 -2.6889 40 1 -0.6423 7.2020 -5.0952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187140319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:38 Heat of formation + Delta-G solvation = -51.639214 kcal Electronic energy + Delta-G solvation = -21465.880394 eV Core-core repulsion = 18246.022808 eV Total energy + Delta-G solvation = -3219.857586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65964 -38.90154 -36.79484 -36.15022 -33.15689 -32.10145 -31.58036 -28.74326 -27.62283 -26.83540 -25.26553 -23.90662 -22.73169 -21.47636 -20.54738 -19.83813 -17.87949 -16.83740 -16.31546 -16.18951 -15.89238 -15.38725 -14.83587 -14.60702 -14.22160 -14.03802 -13.63309 -13.43661 -13.11624 -12.74515 -12.58186 -12.47027 -12.08084 -11.85478 -11.77495 -11.41049 -11.17939 -11.09277 -10.81170 -10.76326 -10.56290 -10.35656 -10.24591 -9.90409 -9.62352 -9.15370 -9.12883 -8.75528 -8.35581 -7.06348 -5.94247 -3.94771 0.67932 1.24776 2.63470 2.74287 3.36684 3.42304 3.47759 3.69350 4.49019 4.63053 4.70857 4.80105 4.87278 5.15524 5.19869 5.26134 5.28686 5.37583 5.42388 5.55145 5.59711 5.73583 5.85336 5.91191 6.12628 6.15494 6.23105 6.27125 6.31582 6.37473 6.45468 6.71259 6.71620 6.82408 6.91708 7.43579 7.46261 7.89808 7.91679 8.22116 8.35264 8.68582 9.13136 9.68678 11.16864 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.004408 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.474907 B = 6350.864424 C = 7276.017022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.491 3.509 4 O -0.465 6.465 5 C -0.124 4.124 6 C -0.062 4.062 7 C -0.145 4.145 8 C -0.084 4.084 9 C -0.132 4.132 10 C -0.006 4.006 11 C -0.090 4.090 12 C 0.077 3.923 13 N -0.535 5.535 14 C 0.035 3.965 15 C 0.195 3.805 16 C -0.502 4.502 17 H 0.063 0.937 18 C 0.053 3.947 19 N -0.901 5.901 20 Si 0.897 3.103 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.070 0.930 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.045 0.955 38 H -0.012 1.012 39 H 0.028 0.972 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.784 -15.516 9.854 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.281 6.281 3 C 0.334 3.666 4 O -0.351 6.351 5 C -0.126 4.126 6 C -0.081 4.081 7 C -0.163 4.163 8 C -0.102 4.102 9 C -0.150 4.150 10 C -0.007 4.007 11 C -0.127 4.127 12 C -0.052 4.052 13 N -0.259 5.259 14 C -0.113 4.113 15 C 0.070 3.930 16 C -0.541 4.541 17 H 0.081 0.919 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.725 3.275 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.085 0.915 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.089 0.911 35 H 0.026 0.974 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.006 0.994 39 H 0.046 0.954 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.084 -15.267 10.008 20.855 hybrid contribution -0.189 0.853 -0.698 1.118 sum 9.895 -14.415 9.310 19.808 Atomic orbital electron populations 1.23257 0.75942 1.03321 1.03108 1.86486 1.23570 1.33064 1.84934 1.21260 0.89181 0.81734 0.74395 1.91006 1.66471 1.34647 1.42955 1.19002 0.89277 0.94499 1.09783 1.21425 0.93928 0.97726 0.94986 1.21087 0.94317 0.98048 1.02884 1.21404 1.00157 0.92487 0.96133 1.21082 0.92726 0.99034 1.02156 1.20207 0.93964 0.94234 0.92290 1.20974 0.99533 0.91896 1.00267 1.21825 0.95303 0.94456 0.93567 1.62012 1.28829 1.01572 1.33480 1.22262 0.95673 0.95903 0.97494 1.19696 0.92986 0.96570 0.83784 1.21192 1.20672 1.17366 0.94867 0.91873 1.24990 0.97388 0.97240 0.95107 1.69967 1.41694 1.42586 0.99845 0.86511 0.80850 0.82124 0.78010 1.20808 1.21317 1.19769 0.91469 0.88357 0.91794 0.84686 0.85439 0.85548 0.85107 0.87813 0.91554 0.96911 0.91118 0.97395 0.90882 0.93655 0.99435 0.95358 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.57 101.05 1.07 1.48 16 2 O -0.36 -4.79 9.83 -40.51 -0.40 -5.19 16 3 C 0.49 7.61 7.76 34.61 0.27 7.88 16 4 O -0.46 -8.75 11.38 -19.24 -0.22 -8.97 16 5 C -0.12 -1.73 5.87 -104.98 -0.62 -2.35 16 6 C -0.06 -0.69 9.62 -39.17 -0.38 -1.06 16 7 C -0.15 -1.35 10.03 -39.64 -0.40 -1.74 16 8 C -0.08 -0.79 10.04 -39.48 -0.40 -1.19 16 9 C -0.13 -1.52 9.66 -39.64 -0.38 -1.91 16 10 C -0.01 -0.09 5.17 -104.21 -0.54 -0.62 16 11 C -0.09 -1.49 4.53 -27.88 -0.13 -1.62 16 12 C 0.08 1.57 4.47 -3.83 -0.02 1.55 16 13 N -0.53 -12.65 4.75 -244.37 -1.16 -13.81 16 14 C 0.04 0.74 9.14 60.06 0.55 1.28 16 15 C 0.19 5.46 4.72 -4.98 -0.02 5.44 16 16 C -0.50 -14.86 8.46 -34.44 -0.29 -15.15 16 17 H 0.06 1.85 7.12 -52.49 -0.37 1.47 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 20 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.14 1.25 7.63 -52.49 -0.40 0.85 16 28 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.13 1.32 8.04 -52.49 -0.42 0.89 16 31 H 0.10 1.92 5.96 -51.93 -0.31 1.61 16 32 H 0.07 1.01 6.43 -51.93 -0.33 0.67 16 33 H 0.01 0.26 8.12 -51.93 -0.42 -0.17 16 34 H 0.07 1.56 6.36 -51.93 -0.33 1.23 16 35 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 37 H 0.04 0.80 6.47 -51.92 -0.34 0.46 16 38 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 39 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -33.78 331.53 -8.23 -42.01 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.78 Total: -2.80 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.38 Total: -6.52 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.43 Total: -40.88 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.62 Total: -14.16 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.78 -8.23 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187140319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.626 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds