Wall clock time and date at job start Mon Mar 30 2020 01:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 117.00047 * 2 1 4 4 O 1.21472 * 120.00302 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99804 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.15174 * 5.67122 * 5 3 2 7 7 C 1.37918 * 119.84781 * 180.31560 * 6 5 3 8 8 C 1.38389 * 120.15089 * 359.66867 * 7 6 5 9 9 C 1.38351 * 120.30296 * 359.97438 * 8 7 6 10 10 C 1.37962 * 120.14913 * 0.04936 * 9 8 7 11 11 C 1.50702 * 120.07872 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47106 * 98.63857 * 11 10 9 13 13 N 1.46896 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00126 * 66.04749 * 13 12 11 15 15 C 1.46893 * 111.00162 * 190.00108 * 13 12 11 16 16 C 1.50706 * 109.47263 * 169.99752 * 15 13 12 17 17 H 1.07997 * 120.00094 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99752 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00483 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99601 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47272 * 89.99903 * 20 18 16 22 22 H 1.48504 * 109.47157 * 209.99749 * 20 18 16 23 23 H 1.48501 * 109.47219 * 329.99297 * 20 18 16 24 24 H 1.09001 * 109.47047 * 60.00205 * 1 2 3 25 25 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46707 * 300.00326 * 1 2 3 27 27 H 1.07999 * 120.07403 * 359.97438 * 6 5 3 28 28 H 1.08003 * 119.92693 * 179.67787 * 7 6 5 29 29 H 1.07998 * 119.85112 * 180.02562 * 8 7 6 30 30 H 1.07996 * 119.92620 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47229 * 218.64549 * 11 10 9 32 32 H 1.09004 * 109.46629 * 338.64019 * 11 10 9 33 33 H 1.09000 * 109.47189 * 300.00721 * 12 11 10 34 34 H 1.09005 * 109.46780 * 60.00276 * 12 11 10 35 35 H 1.08995 * 109.47055 * 59.99796 * 14 13 12 36 36 H 1.09004 * 109.47270 * 180.02562 * 14 13 12 37 37 H 1.09011 * 109.47063 * 300.00052 * 14 13 12 38 38 H 1.09000 * 109.47034 * 290.00130 * 15 13 12 39 39 H 1.09006 * 109.47299 * 50.00248 * 15 13 12 40 40 H 0.96998 * 120.00589 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3022 0.1142 -0.1204 7 6 5.6791 0.1930 -0.1137 8 6 6.3045 1.4218 0.0046 9 6 5.5544 2.5789 0.1163 10 6 4.1763 2.5146 0.1114 11 6 3.3608 3.7760 0.2338 12 6 2.9013 4.2229 -1.1555 13 7 2.1069 5.4528 -1.0363 14 6 2.9352 6.5710 -0.5657 15 6 1.4522 5.7821 -2.3093 16 6 0.4605 6.8957 -2.0910 17 1 0.3295 7.3165 -1.1050 18 6 -0.2802 7.3766 -3.1498 19 7 -0.1210 6.8640 -4.3504 20 14 -1.5088 8.7575 -2.8793 21 1 -0.8350 10.0657 -3.0786 22 1 -2.6258 8.6232 -3.8486 23 1 -2.0424 8.6812 -1.4955 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 3.8154 -0.8454 -0.2127 28 1 6.2707 -0.7064 -0.2011 29 1 7.3830 1.4779 0.0089 30 1 6.0488 3.5347 0.2079 31 1 2.4899 3.5862 0.8611 32 1 3.9695 4.5597 0.6848 33 1 3.7723 4.4127 -1.7827 34 1 2.2926 3.4391 -1.6064 35 1 3.7457 6.7456 -1.2732 36 1 2.3223 7.4688 -0.4859 37 1 3.3522 6.3281 0.4118 38 1 2.2031 6.1007 -3.0323 39 1 0.9325 4.9022 -2.6889 40 1 -0.6423 7.2020 -5.0952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187140319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:38 Heat of formation + Delta-G solvation = -73.307757 kcal Electronic energy + Delta-G solvation = -21466.820013 eV Core-core repulsion = 18246.022808 eV Total energy + Delta-G solvation = -3220.797205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.76367 -39.89678 -38.43615 -37.45126 -34.98860 -33.72737 -32.48243 -30.20684 -28.91002 -28.47769 -26.98617 -25.02002 -24.24421 -22.71600 -21.94217 -21.34657 -18.90124 -18.52996 -17.93403 -17.39775 -17.00573 -16.71495 -16.42778 -15.99118 -15.63277 -15.46337 -15.17173 -14.53410 -14.45470 -13.98776 -13.95183 -13.89211 -13.63667 -13.12269 -13.05338 -12.86753 -12.75894 -12.63298 -12.53940 -12.30659 -12.21403 -11.89985 -11.84305 -11.58677 -11.31926 -10.99701 -10.64381 -10.00319 -9.74529 -8.99756 -8.22354 -6.33491 -0.27086 0.38353 1.38267 1.41169 1.53098 1.56965 1.72684 2.38850 2.77906 3.09212 3.32269 3.69083 3.90605 3.90901 4.09306 4.23174 4.31225 4.32341 4.36855 4.44024 4.48522 4.55814 4.60279 4.68523 4.71728 4.85376 4.96246 5.01552 5.06386 5.11138 5.19276 5.26248 5.35953 5.39240 5.48906 5.61182 5.66649 5.94327 6.03145 6.34797 6.63942 6.76320 6.82706 7.36195 8.89368 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.004408 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.474907 B = 6350.864424 C = 7276.017022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.487 3.513 4 O -0.512 6.512 5 C -0.149 4.149 6 C -0.063 4.063 7 C -0.134 4.134 8 C -0.073 4.073 9 C -0.136 4.136 10 C -0.032 4.032 11 C -0.073 4.073 12 C 0.085 3.915 13 N -0.548 5.548 14 C 0.039 3.961 15 C 0.212 3.788 16 C -0.524 4.524 17 H 0.063 0.937 18 C -0.001 4.001 19 N -0.937 5.937 20 Si 0.975 3.025 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.049 0.951 25 H 0.140 0.860 26 H 0.060 0.940 27 H 0.151 0.849 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.014 0.986 34 H 0.043 0.957 35 H 0.011 0.989 36 H 0.058 0.942 37 H 0.082 0.918 38 H -0.040 1.040 39 H -0.010 1.010 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.632 -16.272 11.033 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.334 3.666 4 O -0.401 6.401 5 C -0.150 4.150 6 C -0.081 4.081 7 C -0.151 4.151 8 C -0.091 4.091 9 C -0.154 4.154 10 C -0.033 4.033 11 C -0.110 4.110 12 C -0.043 4.043 13 N -0.272 5.272 14 C -0.109 4.109 15 C 0.086 3.914 16 C -0.562 4.562 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.190 1.190 24 H 0.068 0.932 25 H 0.158 0.842 26 H 0.078 0.922 27 H 0.168 0.832 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.163 0.837 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.100 0.900 38 H -0.022 1.022 39 H 0.008 0.992 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.955 -16.055 11.206 22.940 hybrid contribution -0.683 0.941 -1.074 1.583 sum 11.272 -15.114 10.132 21.405 Atomic orbital electron populations 1.23496 0.74838 1.05664 1.02087 1.86483 1.24688 1.31944 1.84381 1.21787 0.90165 0.81601 0.73093 1.90983 1.67599 1.36118 1.45444 1.19119 0.88373 0.95776 1.11759 1.21674 0.94886 0.97207 0.94310 1.21563 0.93614 0.99551 1.00396 1.21854 1.01924 0.91548 0.93750 1.21316 0.91525 1.00851 1.01700 1.20081 0.95039 0.93046 0.95146 1.20681 0.99330 0.93948 0.97066 1.21771 0.94157 0.92155 0.96253 1.61943 1.30795 1.03652 1.30797 1.22274 0.95027 0.94300 0.99287 1.19319 0.92274 0.94620 0.85216 1.21466 1.21544 1.18066 0.95159 0.91836 1.25996 0.99327 0.99977 0.94555 1.70105 1.42719 1.44075 1.00870 0.85302 0.77975 0.78604 0.78241 1.19336 1.20536 1.18978 0.93243 0.84243 0.92153 0.83155 0.81684 0.81835 0.83685 0.90129 0.89985 0.96773 0.93872 0.97012 0.92364 0.89960 1.02220 0.99155 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.57 113.37 1.20 1.92 16 2 O -0.36 -9.63 9.83 -56.18 -0.55 -10.18 16 3 C 0.49 15.88 7.76 70.33 0.55 16.43 16 4 O -0.51 -20.83 11.38 19.93 0.23 -20.61 16 5 C -0.15 -4.14 5.87 -20.10 -0.12 -4.26 16 6 C -0.06 -1.24 9.62 22.53 0.22 -1.03 16 7 C -0.13 -1.92 10.03 22.23 0.22 -1.70 16 8 C -0.07 -1.08 10.04 22.33 0.22 -0.85 16 9 C -0.14 -2.82 9.66 22.23 0.21 -2.61 16 10 C -0.03 -0.90 5.17 -19.60 -0.10 -1.01 16 11 C -0.07 -2.49 4.53 29.85 0.14 -2.36 16 12 C 0.08 3.63 4.47 86.30 0.39 4.02 16 13 N -0.55 -27.08 4.75 -927.04 -4.41 -31.49 16 14 C 0.04 1.64 9.14 127.69 1.17 2.81 16 15 C 0.21 12.62 4.72 85.56 0.40 13.02 16 16 C -0.52 -32.06 8.46 25.60 0.22 -31.84 16 17 H 0.06 3.80 7.12 -2.91 -0.02 3.78 16 18 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 19 N -0.94 -59.47 13.29 21.45 0.28 -59.19 16 20 Si 0.98 46.39 29.54 68.60 2.03 48.41 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.15 2.43 7.63 -2.91 -0.02 2.41 16 28 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 29 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.15 2.51 8.04 -2.91 -0.02 2.49 16 31 H 0.08 3.14 5.96 -2.39 -0.01 3.12 16 32 H 0.08 2.44 6.43 -2.38 -0.02 2.42 16 33 H 0.01 0.59 8.12 -2.39 -0.02 0.57 16 34 H 0.04 2.06 6.36 -2.38 -0.02 2.05 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 2.59 6.76 -2.39 -0.02 2.57 16 37 H 0.08 2.81 6.47 -2.38 -0.02 2.79 16 38 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 39 H -0.01 -0.64 7.93 -2.38 -0.02 -0.65 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -77.81 331.53 3.78 -74.03 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.03 Total: 6.07 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 5.17 Total: -7.04 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -4.12 Total: -90.67 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.33 Total: -30.79 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.81 3.78 -74.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187140319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.721 kcal (2) G-P(sol) polarization free energy of solvation -77.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds