Wall clock time and date at job start Mon Mar 30 2020 01:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47139 * 2 1 4 4 C 1.35896 * 117.00141 * 179.97438 * 3 2 1 5 5 C 1.38726 * 120.05512 * 180.02562 * 4 3 2 6 6 C 1.38149 * 119.94470 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.05453 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.94515 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47392 * 89.99773 * 8 7 6 10 10 C 1.47960 * 110.99975 * 190.00152 * 9 8 7 11 11 C 1.53940 * 86.18020 * 222.41827 * 10 9 8 12 12 O 1.42900 * 113.73337 * 269.26005 * 11 10 9 13 13 C 1.50694 * 113.73364 * 138.08016 * 11 10 9 14 14 H 1.08000 * 120.00563 * 1.89939 * 13 11 10 15 15 C 1.37885 * 119.99902 * 181.90102 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.48189 * 111.06803 * 90.56563 * 9 8 7 22 22 C 1.38263 * 120.11305 * 0.27591 * 7 6 5 23 23 C 1.38147 * 120.05223 * 359.45216 * 22 7 6 24 24 H 1.09003 * 109.47189 * 59.99770 * 1 2 3 25 25 H 1.09005 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47318 * 299.99761 * 1 2 3 27 27 H 1.09001 * 109.47318 * 240.00239 * 2 1 3 28 28 H 1.09003 * 109.47189 * 120.00230 * 2 1 3 29 29 H 1.07996 * 120.03340 * 359.95604 * 5 4 3 30 30 H 1.08004 * 119.97469 * 180.02562 * 6 5 4 31 31 H 1.09003 * 109.46888 * 329.99936 * 8 7 6 32 32 H 1.09005 * 109.47315 * 210.00258 * 8 7 6 33 33 H 1.09000 * 113.75922 * 108.10132 * 10 9 8 34 34 H 1.08994 * 113.76148 * 336.73400 * 10 9 8 35 35 H 0.96699 * 113.99865 * 178.10203 * 12 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 37 37 H 1.08996 * 113.76245 * 23.24297 * 21 9 8 38 38 H 1.08999 * 113.82580 * 251.80952 * 21 9 8 39 39 H 1.08001 * 119.97543 * 179.70710 * 22 7 6 40 40 H 1.08004 * 120.02824 * 180.27978 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 3.8850 2.8068 0.0011 6 6 5.2549 2.9852 0.0022 7 6 6.0961 1.8879 0.0032 8 6 7.5901 2.0854 0.0050 9 7 8.0740 2.1497 1.3906 10 6 9.4892 2.5787 1.4386 11 6 9.6768 1.4866 2.5072 12 8 9.4691 1.9479 3.8437 13 6 10.9502 0.6964 2.3498 14 1 11.6443 0.9424 1.5598 15 6 11.2293 -0.3408 3.2144 16 7 10.3843 -0.6401 4.1768 17 14 12.8075 -1.3208 3.0188 18 1 12.5666 -2.4713 2.1113 19 1 13.8633 -0.4492 2.4437 20 1 13.2472 -1.8210 4.3461 21 6 8.4434 0.8038 1.8888 22 6 5.5689 0.6097 -0.0025 23 6 4.1997 0.4261 0.0020 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.2284 3.6643 0.0004 30 1 5.6692 3.9826 0.0031 31 1 7.8342 3.0153 -0.5086 32 1 8.0676 1.2507 -0.5083 33 1 9.6284 3.5915 1.8167 34 1 10.0372 2.3889 0.5158 35 1 9.5575 1.2584 4.5159 36 1 10.5805 -1.3700 4.7847 37 1 8.6849 0.0938 1.0980 38 1 7.7486 0.4012 2.6259 39 1 6.2281 -0.2458 -0.0065 40 1 3.7884 -0.5726 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191918673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:08 Heat of formation + Delta-G solvation = -30.486486 kcal Electronic energy + Delta-G solvation = -21106.314667 eV Core-core repulsion = 17887.374332 eV Total energy + Delta-G solvation = -3218.940335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10179 -38.98835 -37.41568 -34.28968 -32.26475 -32.05771 -30.88144 -30.61595 -27.54504 -25.49128 -25.06128 -24.05654 -22.55383 -21.82116 -20.52322 -18.59659 -18.21190 -17.22221 -16.18453 -15.91137 -15.37915 -15.05243 -14.99045 -14.43628 -13.98707 -13.97020 -13.49270 -13.40668 -13.28971 -12.83891 -12.59280 -12.23535 -12.05303 -11.84468 -11.76205 -11.53086 -11.31012 -11.00137 -10.84904 -10.72432 -10.55077 -10.51518 -10.28531 -9.98564 -9.30433 -8.81384 -8.65006 -8.25689 -7.85936 -7.76942 -6.25351 -4.35422 1.53406 1.61026 3.17054 3.18778 3.26699 3.30157 3.92127 4.25832 4.72033 4.74731 4.90925 4.96300 4.99236 5.02138 5.06535 5.25253 5.28847 5.47632 5.55708 5.58606 5.68694 5.79622 5.86450 5.95435 5.99825 6.13434 6.21686 6.33520 6.42196 6.43955 6.54588 6.70678 6.88558 6.93110 7.07062 7.23992 7.37436 7.48754 7.76357 7.99160 8.03112 8.66447 9.34581 9.63932 10.80330 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026731 B = 0.003598 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.219915 B = 7781.307682 C = 8284.110097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.117 3.883 5 C -0.154 4.154 6 C -0.065 4.065 7 C -0.093 4.093 8 C 0.057 3.943 9 N -0.473 5.473 10 C 0.008 3.992 11 C 0.244 3.756 12 O -0.571 6.571 13 C -0.538 4.538 14 H 0.065 0.935 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.272 1.272 20 H -0.284 1.284 21 C -0.010 4.010 22 C -0.071 4.071 23 C -0.207 4.207 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.388 0.612 36 H 0.270 0.730 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 0.630 -9.117 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.072 3.928 5 C -0.172 4.172 6 C -0.084 4.084 7 C -0.094 4.094 8 C -0.071 4.071 9 N -0.196 5.196 10 C -0.121 4.121 11 C 0.203 3.797 12 O -0.382 6.382 13 C -0.576 4.576 14 H 0.083 0.917 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.729 3.271 18 H -0.205 1.205 19 H -0.197 1.197 20 H -0.209 1.209 21 C -0.139 4.139 22 C -0.090 4.090 23 C -0.226 4.226 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.751 1.595 -8.936 17.320 hybrid contribution 1.468 -1.982 -0.317 2.487 sum -13.283 -0.387 -9.254 16.193 Atomic orbital electron populations 1.21768 0.92963 1.02696 1.03393 1.22733 0.95622 0.82344 1.01406 1.86027 1.19433 1.28942 1.89087 1.18926 0.81862 0.94254 0.97711 1.20351 0.95157 0.94526 1.07213 1.20818 0.91754 0.98855 0.96941 1.19735 0.95706 0.92781 1.01143 1.21583 0.91098 1.00907 0.93523 1.68615 1.18326 1.17447 1.15189 1.24134 0.88257 1.00840 0.98836 1.19744 0.90746 0.88230 0.81006 1.86046 1.93858 1.41432 1.16894 1.21654 1.05809 1.14979 1.15192 0.91707 1.25062 0.96954 0.96551 0.94571 1.69435 1.36023 1.30561 1.17676 0.86432 0.83031 0.79963 0.77626 1.20498 1.19689 1.20929 1.24770 0.99966 0.89998 0.99141 1.20870 0.94096 0.97074 0.96928 1.21145 0.94308 0.97707 1.09453 0.91662 0.90512 0.91546 0.92223 0.92048 0.85613 0.85476 0.91070 0.93549 0.90647 0.91760 0.75861 0.91966 0.92361 0.91097 0.86024 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.05 0.53 5.46 37.16 0.20 0.73 16 3 O -0.32 -4.22 10.14 -19.41 -0.20 -4.41 16 4 C 0.12 1.69 6.69 -39.22 -0.26 1.43 16 5 C -0.15 -2.19 9.99 -39.43 -0.39 -2.58 16 6 C -0.07 -0.97 9.69 -39.61 -0.38 -1.35 16 7 C -0.09 -1.51 5.44 -104.60 -0.57 -2.08 16 8 C 0.06 0.99 4.92 -4.97 -0.02 0.96 16 9 N -0.47 -9.94 6.14 -239.46 -1.47 -11.41 16 10 C 0.01 0.17 7.34 -2.76 -0.02 0.15 16 11 C 0.24 6.20 1.40 -90.83 -0.13 6.07 16 12 O -0.57 -15.60 13.48 -35.23 -0.48 -16.08 16 13 C -0.54 -14.32 8.61 -34.44 -0.30 -14.62 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.07 1.86 5.40 -17.82 -0.10 1.77 16 16 N -0.90 -24.07 11.20 55.43 0.62 -23.45 16 17 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.01 -0.23 7.36 -2.63 -0.02 -0.24 16 22 C -0.07 -1.11 9.69 -39.61 -0.38 -1.49 16 23 C -0.21 -2.94 9.04 -39.43 -0.36 -3.30 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 32 H 0.05 0.79 7.33 -51.93 -0.38 0.41 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.06 1.30 7.87 -51.93 -0.41 0.89 16 35 H 0.39 10.72 6.60 45.56 0.30 11.02 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.06 1.33 7.44 -51.93 -0.39 0.94 16 38 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.12 1.46 6.30 -52.48 -0.33 1.13 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -28.92 333.02 -9.22 -38.13 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.35 Total: 12.18 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.35 Total: -15.30 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.85 Total: -34.86 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.67 Total: -20.49 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.92 -9.22 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191918673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.647 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds