Wall clock time and date at job start Mon Mar 30 2020 01:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47187 * 2 1 4 4 C 1.42900 * 113.99975 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47037 * 30.00666 * 4 3 2 6 6 C 1.50699 * 109.46806 * 150.00340 * 4 3 2 7 7 O 1.21280 * 120.00312 * 5.00163 * 6 4 3 8 8 N 1.34784 * 120.00292 * 185.00320 * 6 4 3 9 9 C 1.46497 * 120.00075 * 180.02562 * 8 6 4 10 10 H 1.08996 * 109.47049 * 324.99133 * 9 8 6 11 11 C 1.52997 * 109.47188 * 85.00024 * 9 8 6 12 12 C 1.50706 * 109.46582 * 204.99875 * 9 8 6 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 119.99350 * 179.97438 * 14 12 9 16 16 Si 1.86789 * 120.00458 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47356 * 89.99481 * 16 14 12 18 18 H 1.48501 * 109.47162 * 209.99853 * 16 14 12 19 19 H 1.48503 * 109.47180 * 329.99546 * 16 14 12 20 20 C 1.50693 * 109.47571 * 270.00305 * 4 3 2 21 21 C 1.38246 * 119.99922 * 324.72701 * 20 4 3 22 22 C 1.38235 * 119.99871 * 179.80904 * 21 20 4 23 23 C 1.38230 * 119.99810 * 0.39789 * 22 21 20 24 24 C 1.38234 * 120.00449 * 359.85648 * 23 22 21 25 25 C 1.38230 * 120.00447 * 145.00213 * 20 4 3 26 26 H 1.08999 * 109.47250 * 299.99553 * 1 2 3 27 27 H 1.08994 * 109.47465 * 59.99838 * 1 2 3 28 28 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47250 * 240.00447 * 2 1 3 30 30 H 1.09001 * 109.47354 * 120.00516 * 2 1 3 31 31 H 0.96996 * 119.99132 * 359.97438 * 8 6 4 32 32 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 33 33 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 34 34 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 35 35 H 0.97005 * 119.99656 * 180.02562 * 15 14 12 36 36 H 1.07993 * 119.99768 * 359.97438 * 21 20 4 37 37 H 1.07999 * 119.99872 * 180.23654 * 22 21 20 38 38 H 1.08002 * 119.99759 * 179.83432 * 23 22 21 39 39 H 1.07997 * 120.00019 * 179.97438 * 24 23 22 40 40 H 1.08007 * 119.99979 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6016 -0.5130 6 6 3.8347 2.7263 -0.7098 7 8 2.9864 3.5047 -1.0911 8 7 5.1387 2.9939 -0.9214 9 6 5.5312 4.2251 -1.6114 10 1 4.7924 4.4643 -2.3762 11 6 5.6107 5.3722 -0.6022 12 6 6.8785 4.0306 -2.2581 13 1 7.3912 3.0847 -2.1640 14 6 7.4566 5.0604 -2.9698 15 7 8.6325 4.8909 -3.5337 16 14 6.5702 6.6966 -3.1318 17 1 6.9614 7.5850 -2.0080 18 1 6.9414 7.3352 -4.4201 19 1 5.1029 6.4703 -3.0963 20 6 3.9311 1.4999 1.4215 21 6 3.1872 2.1346 2.3987 22 6 3.6442 2.1677 3.7029 23 6 4.8490 1.5733 4.0283 24 6 5.5954 0.9431 3.0503 25 6 5.1365 0.9067 1.7468 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.8171 2.3715 -0.6160 32 1 4.6362 5.5128 -0.1345 33 1 5.9032 6.2882 -1.1156 34 1 6.3496 5.1329 0.1625 35 1 9.0394 5.6155 -4.0341 36 1 2.2478 2.6023 2.1436 37 1 3.0612 2.6603 4.4670 38 1 5.2073 1.6014 5.0468 39 1 6.5368 0.4790 3.3045 40 1 5.7197 0.4142 0.9826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194629438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:21 Heat of formation + Delta-G solvation = -56.237240 kcal Electronic energy + Delta-G solvation = -21781.499344 eV Core-core repulsion = 18561.442373 eV Total energy + Delta-G solvation = -3220.056971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.09661 -38.48871 -37.45585 -34.92976 -32.81859 -32.16794 -30.96883 -30.63459 -29.81874 -26.59336 -25.14854 -23.05366 -22.44333 -22.12174 -20.94872 -19.58785 -17.58494 -17.17245 -16.73320 -16.06611 -15.80878 -15.31144 -14.96072 -14.61277 -14.54443 -14.02175 -13.52347 -13.37835 -13.17559 -12.92852 -12.67688 -12.50834 -12.29371 -12.17499 -11.92379 -11.79496 -11.33501 -11.28664 -11.05820 -10.95354 -10.79273 -10.17584 -9.89206 -9.66699 -9.27212 -9.22256 -8.91213 -8.74960 -8.58669 -8.14640 -6.20492 -4.22853 1.26414 1.41361 3.15327 3.24762 3.27423 3.36687 3.42183 3.73783 4.32621 4.36728 4.63763 4.85260 4.98017 4.99222 5.05850 5.12915 5.14695 5.26600 5.30086 5.35395 5.47138 5.55525 5.63779 5.82999 5.91300 6.02032 6.05377 6.33561 6.40382 6.42616 6.49927 6.52442 6.58481 6.86996 6.96989 7.07785 7.24209 7.30634 7.52359 8.15336 8.51723 8.75950 8.92386 9.40512 10.91615 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.005352 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.658458 B = 5229.999100 C = 6042.464148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.114 3.886 5 H 0.091 0.909 6 C 0.511 3.489 7 O -0.532 6.532 8 N -0.696 5.696 9 C 0.239 3.761 10 H 0.049 0.951 11 C -0.160 4.160 12 C -0.534 4.534 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.892 5.892 16 Si 0.885 3.115 17 H -0.276 1.276 18 H -0.294 1.294 19 H -0.261 1.261 20 C -0.109 4.109 21 C -0.087 4.087 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.107 4.107 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.394 0.606 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.267 0.733 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 -10.914 13.056 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.052 3.948 5 H 0.108 0.892 6 C 0.294 3.706 7 O -0.409 6.409 8 N -0.345 5.345 9 C 0.135 3.865 10 H 0.067 0.933 11 C -0.219 4.219 12 C -0.572 4.572 13 H 0.098 0.902 14 C -0.125 4.125 15 N -0.529 5.529 16 Si 0.714 3.286 17 H -0.203 1.203 18 H -0.221 1.221 19 H -0.186 1.186 20 C -0.110 4.110 21 C -0.105 4.105 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.126 4.126 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.227 0.773 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.396 -10.092 12.639 19.227 hybrid contribution 0.317 0.396 0.086 0.514 sum -10.079 -9.696 12.725 18.909 Atomic orbital electron populations 1.21709 0.93556 1.01982 1.03349 1.22583 0.95795 0.83886 1.00077 1.88048 1.18015 1.25993 1.94669 1.20778 0.83409 0.98225 0.92382 0.89168 1.19966 0.83726 0.86827 0.80054 1.90672 1.50399 1.48766 1.51051 1.46077 1.05436 1.24803 1.58208 1.19117 0.96894 0.80058 0.90387 0.93310 1.22440 0.99616 0.99424 1.00376 1.21019 1.01346 1.01506 1.33303 0.90191 1.24814 0.94568 0.98621 0.94461 1.69868 1.15685 1.33268 1.34120 0.86884 0.81139 0.83956 0.76588 1.20284 1.22138 1.18619 1.20103 0.96010 0.99978 0.94924 1.21024 0.99913 0.97168 0.92361 1.21149 0.96644 1.00032 0.96373 1.21175 0.95023 0.98002 0.99346 1.21086 0.99803 0.99925 0.92952 1.21036 0.95268 0.99319 0.96933 0.91873 0.91621 0.91223 0.93215 0.93328 0.77271 0.94535 0.93450 0.92819 0.92291 0.85400 0.86099 0.86202 0.85837 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.61 6.46 37.16 0.24 0.85 16 3 O -0.35 -5.46 8.68 -55.09 -0.48 -5.94 16 4 C 0.11 1.75 2.73 -29.04 -0.08 1.67 16 5 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 6 C 0.51 10.26 7.13 -10.98 -0.08 10.18 16 7 O -0.53 -12.84 16.17 -14.30 -0.23 -13.07 16 8 N -0.70 -14.26 5.02 -54.93 -0.28 -14.54 16 9 C 0.24 5.82 2.15 -69.08 -0.15 5.67 16 10 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 11 C -0.16 -3.71 8.96 37.16 0.33 -3.38 16 12 C -0.53 -14.50 9.31 -34.44 -0.32 -14.82 16 13 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 14 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 15 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 16 Si 0.88 22.01 24.37 -169.99 -4.14 17.87 16 17 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 20 C -0.11 -1.52 4.91 -104.63 -0.51 -2.04 16 21 C -0.09 -1.20 9.35 -39.58 -0.37 -1.57 16 22 C -0.12 -1.46 10.05 -39.59 -0.40 -1.85 16 23 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.11 -1.31 9.51 -39.59 -0.38 -1.68 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.39 7.11 8.37 -40.82 -0.34 6.77 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.13 1.85 7.64 -52.49 -0.40 1.45 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -32.84 334.16 -7.45 -40.29 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.90 Total: 5.32 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.22 Total: -9.29 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.50 Total: -40.21 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.71 Total: -19.02 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.84 -7.45 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.948 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds