Wall clock time and date at job start Mon Mar 30 2020 01:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47449 * 2 1 4 4 C 1.42900 * 114.00386 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46749 * 30.00078 * 4 3 2 6 6 C 1.50694 * 109.47046 * 269.99946 * 4 3 2 7 7 O 1.21283 * 120.00363 * 354.99783 * 6 4 3 8 8 N 1.34784 * 119.99988 * 174.99901 * 6 4 3 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 4 10 10 H 1.08999 * 109.47597 * 34.99540 * 9 8 6 11 11 C 1.53000 * 109.47099 * 274.99655 * 9 8 6 12 12 C 1.50703 * 109.47052 * 154.99907 * 9 8 6 13 13 H 1.07995 * 120.00009 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99689 * 179.97438 * 12 9 8 15 15 N 1.31508 * 120.00541 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 119.99577 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47227 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46982 * 119.99902 * 16 14 12 19 19 H 1.48494 * 109.47058 * 239.99930 * 16 14 12 20 20 C 1.50698 * 109.47079 * 149.99952 * 4 3 2 21 21 C 1.38231 * 120.00153 * 39.72555 * 20 4 3 22 22 C 1.38238 * 119.99750 * 179.78689 * 21 20 4 23 23 C 1.38230 * 120.00205 * 0.44064 * 22 21 20 24 24 C 1.38236 * 119.99898 * 359.81637 * 23 22 21 25 25 C 1.38229 * 120.00049 * 359.97152 * 24 23 22 26 26 H 1.08997 * 109.47085 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47101 * 300.00486 * 1 2 3 28 28 H 1.09001 * 109.46813 * 60.00342 * 1 2 3 29 29 H 1.09004 * 109.47616 * 239.99470 * 2 1 3 30 30 H 1.09001 * 109.46813 * 119.99658 * 2 1 3 31 31 H 0.97000 * 119.99339 * 0.02562 * 8 6 4 32 32 H 1.09003 * 109.47308 * 180.02562 * 11 9 8 33 33 H 1.09005 * 109.47224 * 300.00512 * 11 9 8 34 34 H 1.09008 * 109.47230 * 60.00254 * 11 9 8 35 35 H 0.96996 * 120.00555 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.00268 * 0.02562 * 21 20 4 37 37 H 1.08000 * 119.99686 * 180.27686 * 22 21 20 38 38 H 1.08005 * 120.00143 * 179.83060 * 23 22 21 39 39 H 1.08006 * 119.99675 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.00067 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9311 1.5000 1.4216 7 8 3.1416 1.5295 2.3418 8 7 5.2558 1.5029 1.6699 9 6 5.7420 1.5477 3.0511 10 1 5.0661 0.9826 3.6928 11 6 5.7987 3.0014 3.5249 12 6 7.1209 0.9434 3.1181 13 1 7.5882 0.5636 2.2216 14 6 7.7859 0.8755 4.3240 15 7 7.2168 1.3376 5.4158 16 14 9.4955 0.1271 4.4069 17 1 9.9087 -0.3149 3.0508 18 1 10.4560 1.1415 4.9104 19 1 9.4810 -1.0397 5.3253 20 6 3.8348 2.7262 -0.7098 21 6 3.1033 3.8848 -0.5270 22 6 3.4765 5.0473 -1.1753 23 6 4.5757 5.0490 -2.0135 24 6 5.3041 3.8891 -2.2004 25 6 4.9336 2.7277 -1.5488 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8872 1.4797 0.9339 32 1 6.1609 3.0348 4.5524 33 1 6.4747 3.5666 2.8831 34 1 4.8013 3.4385 3.4764 35 1 7.6848 1.2901 6.2641 36 1 2.2426 3.8827 0.1252 37 1 2.9076 5.9536 -1.0290 38 1 4.8656 5.9566 -2.5221 39 1 6.1627 3.8903 -2.8556 40 1 5.5024 1.8213 -1.6952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194629456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:22 Heat of formation + Delta-G solvation = -85.153373 kcal Electronic energy + Delta-G solvation = -21731.124691 eV Core-core repulsion = 18509.813822 eV Total energy + Delta-G solvation = -3221.310869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33675 -39.68597 -38.55722 -36.65260 -34.48295 -33.56846 -31.86803 -31.49625 -30.86437 -27.67862 -27.32529 -24.07224 -23.56113 -23.16974 -22.39055 -21.17492 -19.27023 -18.18341 -17.77230 -17.71445 -16.97456 -16.61025 -16.29188 -15.82886 -15.47399 -15.44560 -14.89378 -14.67271 -14.41486 -14.23167 -13.81638 -13.59127 -13.36726 -13.16982 -13.02241 -12.89738 -12.85887 -12.76525 -12.31298 -12.24312 -12.12966 -12.01166 -11.83085 -11.43575 -11.12458 -10.64079 -10.39990 -9.80567 -9.80382 -9.63135 -8.18431 -6.36621 0.33905 0.51938 1.44755 1.45236 1.57814 1.67940 2.20853 2.44010 2.67033 3.04995 3.12479 3.64519 3.85017 3.91394 4.11186 4.16644 4.19147 4.31051 4.35494 4.44132 4.63704 4.68521 4.70248 4.81448 4.87647 5.00729 5.02658 5.06155 5.16526 5.22154 5.38659 5.54942 5.58044 5.59491 5.62493 5.63748 5.84179 6.05949 6.07099 6.11816 6.70643 6.90192 7.29911 7.48387 8.88391 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.005368 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.744319 B = 5215.015635 C = 6249.747548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 O -0.371 6.371 4 C 0.126 3.874 5 H 0.118 0.882 6 C 0.481 3.519 7 O -0.588 6.588 8 N -0.696 5.696 9 C 0.271 3.729 10 H -0.004 1.004 11 C -0.130 4.130 12 C -0.544 4.544 13 H 0.076 0.924 14 C 0.013 3.987 15 N -0.919 5.919 16 Si 0.975 3.025 17 H -0.257 1.257 18 H -0.279 1.279 19 H -0.284 1.284 20 C -0.101 4.101 21 C -0.110 4.110 22 C -0.130 4.130 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.110 4.110 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.404 0.596 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.005 0.995 35 H 0.266 0.734 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 1.982 -18.570 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 O -0.289 6.289 4 C 0.064 3.936 5 H 0.135 0.865 6 C 0.266 3.734 7 O -0.469 6.469 8 N -0.346 5.346 9 C 0.168 3.832 10 H 0.014 0.986 11 C -0.189 4.189 12 C -0.582 4.582 13 H 0.094 0.906 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.800 3.200 17 H -0.181 1.181 18 H -0.205 1.205 19 H -0.210 1.210 20 C -0.101 4.101 21 C -0.128 4.128 22 C -0.148 4.148 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.128 4.128 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.239 0.761 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.024 0.976 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.342 2.169 -17.722 18.636 hybrid contribution 0.827 -0.509 0.759 1.233 sum -4.515 1.660 -16.963 17.631 Atomic orbital electron populations 1.21709 0.92005 1.03594 1.02643 1.22813 0.97227 0.82596 1.00396 1.87950 1.18231 1.28372 1.94375 1.20737 0.83586 0.98815 0.90425 0.86476 1.21808 0.82988 0.76130 0.92428 1.90632 1.56456 1.52018 1.47821 1.46241 1.06063 1.72033 1.10297 1.18352 0.93567 0.93060 0.78208 0.98582 1.21873 0.96700 0.97613 1.02740 1.21547 1.00607 1.40654 0.95429 0.90589 1.25842 1.02470 0.95429 0.94922 1.70065 1.39580 1.46389 0.99742 0.85249 0.78356 0.77744 0.78697 1.18056 1.20462 1.20985 1.19432 0.98125 0.93203 0.99389 1.21040 0.99314 0.93259 0.99206 1.21395 0.98313 0.97725 0.97403 1.21578 0.94581 0.99469 0.97617 1.21482 1.00412 0.92065 0.99724 1.21275 0.95423 1.00523 0.95571 0.88673 0.93477 0.90990 0.90538 0.95106 0.76116 0.91374 0.94178 0.97592 0.92531 0.87844 0.84442 0.83132 0.82682 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 10.28 71.98 0.74 -2.42 16 2 C 0.05 1.24 6.46 71.98 0.46 1.70 16 3 O -0.37 -12.42 8.84 -129.99 -1.15 -13.57 16 4 C 0.13 4.05 2.72 29.10 0.08 4.13 16 5 H 0.12 2.97 7.65 -2.39 -0.02 2.95 16 6 C 0.48 20.68 7.08 87.65 0.62 21.30 16 7 O -0.59 -31.24 16.17 15.95 0.26 -30.98 16 8 N -0.70 -30.16 5.02 -446.10 -2.24 -32.40 16 9 C 0.27 14.52 2.56 44.25 0.11 14.63 16 10 H 0.00 -0.24 7.57 -2.39 -0.02 -0.25 16 11 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 12 C -0.54 -28.97 8.73 25.60 0.22 -28.75 16 13 H 0.08 3.74 7.74 -2.91 -0.02 3.71 16 14 C 0.01 0.71 5.30 84.66 0.45 1.16 16 15 N -0.92 -53.35 11.32 21.45 0.24 -53.10 16 16 Si 0.98 41.83 29.54 68.60 2.03 43.86 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 18 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 C -0.10 -2.93 4.92 -19.87 -0.10 -3.02 16 21 C -0.11 -3.32 9.35 22.27 0.21 -3.11 16 22 C -0.13 -3.13 10.05 22.27 0.22 -2.90 16 23 C -0.11 -2.25 10.05 22.27 0.22 -2.02 16 24 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 25 C -0.11 -2.48 9.67 22.27 0.22 -2.26 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.40 14.66 8.54 -92.71 -0.79 13.86 16 32 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 33 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.10 3.52 7.77 -2.91 -0.02 3.49 16 37 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.15 2.53 8.04 -2.91 -0.02 2.51 16 Total: -1.00 -72.47 341.49 3.72 -68.74 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.23 Total: 27.32 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.35 Total: -9.87 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -2.00 Total: -85.50 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.89 Total: -44.55 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -72.47 3.72 -68.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.410 kcal (2) G-P(sol) polarization free energy of solvation -72.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds