Wall clock time and date at job start Mon Mar 30 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42893 * 109.47437 * 2 1 4 4 C 1.42900 * 114.00309 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47316 * 29.99131 * 4 3 2 6 6 C 1.50697 * 109.47404 * 149.99830 * 4 3 2 7 7 O 1.21280 * 119.99998 * 4.99880 * 6 4 3 8 8 N 1.34775 * 119.99887 * 184.99726 * 6 4 3 9 9 C 1.46502 * 120.00053 * 180.02562 * 8 6 4 10 10 H 1.08996 * 109.47077 * 34.99783 * 9 8 6 11 11 C 1.53008 * 109.47016 * 275.00255 * 9 8 6 12 12 C 1.50695 * 109.47337 * 155.00261 * 9 8 6 13 13 H 1.07998 * 120.00418 * 5.62270 * 12 9 8 14 14 C 1.37879 * 120.00201 * 185.62926 * 12 9 8 15 15 N 1.31514 * 120.00393 * 197.18198 * 14 12 9 16 16 Si 1.86804 * 119.99786 * 17.45333 * 14 12 9 17 17 H 1.48502 * 109.47029 * 179.72709 * 16 14 12 18 18 H 1.48503 * 109.46948 * 299.72609 * 16 14 12 19 19 H 1.48492 * 109.47033 * 59.72641 * 16 14 12 20 20 C 1.50707 * 109.46876 * 269.99645 * 4 3 2 21 21 C 1.38231 * 119.99999 * 324.72833 * 20 4 3 22 22 C 1.38232 * 120.00242 * 179.78634 * 21 20 4 23 23 C 1.38241 * 119.99640 * 0.43956 * 22 21 20 24 24 C 1.38236 * 120.00014 * 359.81378 * 23 22 21 25 25 C 1.38230 * 119.99679 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47350 * 300.00494 * 1 2 3 27 27 H 1.09002 * 109.46823 * 60.00413 * 1 2 3 28 28 H 1.09001 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47350 * 239.99506 * 2 1 3 30 30 H 1.09002 * 109.46823 * 119.99587 * 2 1 3 31 31 H 0.96996 * 120.00288 * 0.02562 * 8 6 4 32 32 H 1.08994 * 109.46957 * 66.33318 * 11 9 8 33 33 H 1.09002 * 109.47065 * 186.34089 * 11 9 8 34 34 H 1.09000 * 109.46665 * 306.33574 * 11 9 8 35 35 H 0.97001 * 119.99221 * 355.17115 * 15 14 12 36 36 H 1.08002 * 120.00125 * 359.97438 * 21 20 4 37 37 H 1.08001 * 120.00444 * 180.26897 * 22 21 20 38 38 H 1.08004 * 119.99669 * 179.82814 * 23 22 21 39 39 H 1.07995 * 119.99738 * 179.97438 * 24 23 22 40 40 H 1.08007 * 119.99669 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8632 0.6015 -0.5146 6 6 3.8343 2.7263 -0.7110 7 8 2.9857 3.5048 -1.0915 8 7 5.1380 2.9938 -0.9234 9 6 5.5303 4.2251 -1.6135 10 1 4.8439 5.0275 -1.3432 11 6 5.4810 3.9998 -3.1261 12 6 6.9311 4.6042 -1.2074 13 1 7.5083 3.9436 -0.5776 14 6 7.4759 5.7947 -1.6399 15 7 8.7765 5.9815 -1.5837 16 14 6.3660 7.1451 -2.2986 17 1 7.1904 8.3170 -2.6890 18 1 5.6260 6.6433 -3.4843 19 1 5.3993 7.5486 -1.2461 20 6 3.9322 1.4995 1.4201 21 6 3.1891 2.1340 2.3979 22 6 3.6467 2.1665 3.7018 23 6 4.8520 1.5723 4.0263 24 6 5.5977 0.9423 3.0475 25 6 5.1379 0.9061 1.7444 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8167 2.3711 -0.6193 32 1 4.4488 3.8365 -3.4357 33 1 5.8794 4.8764 -3.6371 34 1 6.0800 3.1261 -3.3829 35 1 9.3455 5.3111 -1.1740 36 1 2.2494 2.6018 2.1436 37 1 3.0640 2.6584 4.4666 38 1 5.2109 1.6001 5.0446 39 1 6.5395 0.4785 3.3009 40 1 5.7203 0.4136 0.9797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194629471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:25 Heat of formation + Delta-G solvation = -64.029127 kcal Electronic energy + Delta-G solvation = -21778.969147 eV Core-core repulsion = 18558.574294 eV Total energy + Delta-G solvation = -3220.394853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.07984 -38.46209 -37.45375 -34.88892 -32.82395 -32.19640 -30.94063 -30.62298 -29.62309 -26.55866 -24.78690 -23.05851 -22.42106 -22.02312 -20.74061 -19.55171 -17.90460 -17.28068 -16.70270 -16.43412 -15.81648 -15.13487 -14.98286 -14.59130 -14.14525 -14.03308 -13.40076 -13.34871 -13.12540 -12.74254 -12.65847 -12.50818 -12.32266 -12.14691 -11.91748 -11.67373 -11.42564 -11.30604 -11.08579 -10.92716 -10.46709 -10.02521 -9.89655 -9.76294 -9.30329 -9.07363 -8.87497 -8.57999 -8.30966 -8.17092 -6.57183 -4.20243 1.30032 1.45219 3.14822 3.28095 3.40195 3.46737 3.61903 3.77334 4.37096 4.43457 4.64520 4.85560 4.96941 5.01388 5.05980 5.15146 5.18826 5.25173 5.28420 5.35734 5.49069 5.55740 5.65746 5.81398 5.94470 6.01423 6.07446 6.39478 6.45509 6.53278 6.55156 6.56048 6.68129 6.96213 7.00612 7.08864 7.31390 7.41087 7.66365 8.24670 8.46209 8.71505 8.96402 9.48329 10.83617 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.005676 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.009968 B = 4931.764252 C = 5962.073287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.115 3.885 5 H 0.088 0.912 6 C 0.509 3.491 7 O -0.533 6.533 8 N -0.696 5.696 9 C 0.243 3.757 10 H 0.041 0.959 11 C -0.161 4.161 12 C -0.615 4.615 13 H 0.061 0.939 14 C 0.040 3.960 15 N -0.898 5.898 16 Si 1.041 2.959 17 H -0.283 1.283 18 H -0.271 1.271 19 H -0.280 1.280 20 C -0.110 4.110 21 C -0.086 4.086 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.107 4.107 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.392 0.608 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.268 0.732 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.386 -14.044 7.584 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.053 3.947 5 H 0.106 0.894 6 C 0.293 3.707 7 O -0.410 6.410 8 N -0.346 5.346 9 C 0.140 3.860 10 H 0.059 0.941 11 C -0.219 4.219 12 C -0.653 4.653 13 H 0.080 0.920 14 C -0.167 4.167 15 N -0.531 5.531 16 Si 0.869 3.131 17 H -0.209 1.209 18 H -0.197 1.197 19 H -0.206 1.206 20 C -0.111 4.111 21 C -0.104 4.104 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.126 4.126 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.225 0.775 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.089 -11.781 6.607 17.476 hybrid contribution 0.662 -2.149 0.963 2.446 sum -10.427 -13.930 7.569 18.975 Atomic orbital electron populations 1.21709 0.93526 1.01973 1.03384 1.22578 0.95823 0.83927 1.00006 1.88053 1.18028 1.25932 1.94669 1.20783 0.83361 0.98113 0.92467 0.89411 1.19992 0.83839 0.86897 0.80019 1.90665 1.50325 1.48501 1.51465 1.46176 1.05272 1.24956 1.58153 1.19024 0.96521 0.82145 0.88310 0.94136 1.22507 0.98685 1.01716 0.99021 1.22056 0.98338 1.07805 1.37087 0.92045 1.25666 0.97365 0.98670 0.94996 1.70886 1.03265 1.39716 1.39248 0.84095 0.75308 0.76223 0.77518 1.20881 1.19722 1.20601 1.20081 0.96036 1.00052 0.94892 1.21016 0.99947 0.97068 0.92372 1.21155 0.96636 0.99904 0.96402 1.21177 0.94995 0.97921 0.99359 1.21069 0.99730 0.99982 0.92977 1.20986 0.95248 0.99455 0.96871 0.91821 0.91630 0.91231 0.93335 0.93328 0.77530 0.95133 0.91833 0.93719 0.92153 0.85368 0.86029 0.86165 0.85907 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.61 6.46 37.16 0.24 0.85 16 3 O -0.35 -5.52 8.68 -55.09 -0.48 -6.00 16 4 C 0.11 1.80 2.73 -29.03 -0.08 1.72 16 5 H 0.09 1.14 7.70 -51.93 -0.40 0.74 16 6 C 0.51 10.42 7.13 -10.99 -0.08 10.34 16 7 O -0.53 -12.98 16.17 -14.30 -0.23 -13.21 16 8 N -0.70 -14.61 5.02 -54.93 -0.28 -14.89 16 9 C 0.24 5.99 2.14 -69.08 -0.15 5.85 16 10 H 0.04 1.09 6.23 -51.93 -0.32 0.77 16 11 C -0.16 -3.70 9.16 37.16 0.34 -3.36 16 12 C -0.61 -16.82 9.00 -34.44 -0.31 -17.13 16 13 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 14 C 0.04 1.12 5.29 -17.82 -0.09 1.03 16 15 N -0.90 -26.85 13.70 55.43 0.76 -26.09 16 16 Si 1.04 25.49 26.29 -169.99 -4.47 21.03 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.22 5.76 56.52 0.33 -5.89 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 C -0.11 -1.62 4.91 -104.62 -0.51 -2.13 16 21 C -0.09 -1.27 9.35 -39.59 -0.37 -1.64 16 22 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 25 C -0.11 -1.40 9.52 -39.59 -0.38 -1.78 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.39 7.32 8.36 -40.82 -0.34 6.98 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.49 4.88 -51.93 -0.25 1.24 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 36 H 0.13 1.96 7.64 -52.49 -0.40 1.56 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -32.93 336.60 -7.84 -40.77 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.01 Total: 6.23 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -2.20 Total: -12.90 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.48 Total: -40.98 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.71 Total: -19.21 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.47 Total: 21.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.93 -7.84 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.263 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds