Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42905 * 109.47441 * 2 1 4 4 C 1.42895 * 113.99936 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46993 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47164 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.46973 * 184.92866 * 6 5 4 8 8 O 1.21283 * 120.00545 * 354.93579 * 7 6 5 9 9 N 1.34784 * 120.00104 * 174.93252 * 7 6 5 10 10 C 1.37142 * 119.99810 * 3.37539 * 9 7 6 11 11 H 1.08000 * 119.99996 * 305.54981 * 10 9 7 12 12 C 1.38887 * 119.99702 * 125.55110 * 10 9 7 13 13 N 1.31418 * 119.99695 * 181.41038 * 12 10 9 14 14 Si 1.86793 * 120.00249 * 1.40439 * 12 10 9 15 15 H 1.48497 * 109.47181 * 95.25569 * 14 12 10 16 16 H 1.48499 * 109.47310 * 215.25954 * 14 12 10 17 17 H 1.48508 * 109.47275 * 335.25523 * 14 12 10 18 18 C 1.39787 * 119.99939 * 183.37862 * 9 7 6 19 19 C 1.38963 * 120.07426 * 171.67853 * 18 9 7 20 20 C 1.38084 * 119.91926 * 179.97438 * 19 18 9 21 21 C 1.38307 * 120.07963 * 359.97438 * 20 19 18 22 22 C 1.38305 * 120.15586 * 0.02562 * 21 20 19 23 23 C 1.38087 * 120.07979 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47008 * 60.00097 * 1 2 3 25 25 H 1.08999 * 109.47378 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47557 * 300.00182 * 1 2 3 27 27 H 1.09003 * 109.47444 * 240.00122 * 2 1 3 28 28 H 1.09001 * 109.47008 * 119.99903 * 2 1 3 29 29 H 1.08999 * 109.47127 * 60.00416 * 4 3 2 30 30 H 1.09000 * 109.47472 * 299.99621 * 4 3 2 31 31 H 1.08999 * 109.46635 * 60.00372 * 5 4 3 32 32 H 1.08992 * 109.47024 * 300.00523 * 5 4 3 33 33 H 1.08995 * 109.46971 * 64.92774 * 6 5 4 34 34 H 1.09007 * 109.47145 * 304.92897 * 6 5 4 35 35 H 0.97006 * 120.00269 * 179.97438 * 13 12 10 36 36 H 1.07996 * 120.04195 * 359.70316 * 19 18 9 37 37 H 1.08003 * 119.96055 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.92453 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.96176 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.04221 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3506 3.0591 -0.0001 7 6 5.7396 4.5099 0.1212 8 8 4.8849 5.3702 0.1075 9 7 7.0376 4.8515 0.2451 10 6 8.0091 3.8851 0.1912 11 1 7.9613 3.0337 0.8540 12 6 9.0546 4.0014 -0.7157 13 7 9.9705 3.0616 -0.7865 14 14 9.1587 5.4933 -1.8348 15 1 10.0526 6.5094 -1.2233 16 1 9.7033 5.0851 -3.1546 17 1 7.8030 6.0717 -2.0162 18 6 7.3933 6.1909 0.4286 19 6 8.7077 6.5275 0.7286 20 6 9.0557 7.8515 0.9087 21 6 8.0979 8.8423 0.7903 22 6 6.7888 8.5109 0.4919 23 6 6.4336 7.1889 0.3104 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.8339 0.9764 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.4223 3.4223 0.8894 32 1 3.4230 3.4213 -0.8905 33 1 5.7472 2.6532 -0.9307 34 1 5.7593 2.5016 0.8427 35 1 10.7005 3.1426 -1.4202 36 1 9.4553 5.7541 0.8251 37 1 10.0770 8.1139 1.1423 38 1 8.3728 9.8770 0.9321 39 1 6.0435 9.2871 0.3998 40 1 5.4110 6.9308 0.0778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194660006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = -45.726370 kcal Electronic energy + Delta-G solvation = -21424.248015 eV Core-core repulsion = 18204.646829 eV Total energy + Delta-G solvation = -3219.601186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10869 -38.11688 -37.55214 -35.17004 -33.55008 -32.22832 -31.06294 -30.12558 -29.21493 -26.35269 -25.19558 -22.83167 -22.44168 -21.56453 -20.80795 -19.29327 -18.04946 -16.66893 -16.33570 -16.27639 -15.83019 -15.44743 -14.97271 -14.42908 -14.06798 -13.87193 -13.68138 -13.29997 -12.90652 -12.79484 -12.68588 -12.57463 -12.25178 -12.05910 -11.47046 -11.42639 -11.37909 -11.28168 -11.00368 -10.78852 -10.63277 -10.45115 -10.29856 -10.09933 -9.52420 -9.40264 -9.01337 -8.40987 -8.04135 -7.08066 -6.57594 -4.53562 2.03682 2.15688 3.13922 3.23589 3.33643 3.53578 3.62478 4.06535 4.24430 4.58218 4.83930 4.94614 5.07051 5.25246 5.25502 5.34005 5.47726 5.53088 5.60590 5.64990 5.77688 5.81162 5.86977 5.90484 5.92014 5.99276 6.22939 6.29575 6.39399 6.52544 6.55241 6.65919 6.81562 7.16327 7.24968 7.28376 7.31084 7.35898 7.71880 7.96166 8.16129 8.75173 9.05797 9.35655 10.44259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.004625 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.204950 B = 6052.011198 C = 7007.067337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.391 6.391 4 C 0.063 3.937 5 C -0.103 4.103 6 C -0.114 4.114 7 C 0.501 3.499 8 O -0.559 6.559 9 N -0.410 5.410 10 C -0.367 4.367 11 H 0.109 0.891 12 C 0.083 3.917 13 N -0.859 5.859 14 Si 0.873 3.127 15 H -0.254 1.254 16 H -0.291 1.291 17 H -0.258 1.258 18 C 0.159 3.841 19 C -0.162 4.162 20 C -0.105 4.105 21 C -0.173 4.173 22 C -0.109 4.109 23 C -0.185 4.185 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.279 0.721 36 H 0.138 0.862 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 -1.910 0.988 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.310 6.310 4 C -0.013 4.013 5 C -0.141 4.141 6 C -0.154 4.154 7 C 0.294 3.706 8 O -0.443 6.443 9 N -0.120 5.120 10 C -0.494 4.494 11 H 0.127 0.873 12 C -0.127 4.127 13 N -0.492 5.492 14 Si 0.699 3.301 15 H -0.179 1.179 16 H -0.218 1.218 17 H -0.182 1.182 18 C 0.063 3.937 19 C -0.183 4.183 20 C -0.124 4.124 21 C -0.192 4.192 22 C -0.128 4.128 23 C -0.205 4.205 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.156 0.844 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.845 -1.533 0.890 9.021 hybrid contribution 0.840 0.353 -0.563 1.071 sum -8.005 -1.180 0.327 8.098 Atomic orbital electron populations 1.21737 0.94039 1.01940 1.03108 1.22423 0.95383 0.84299 0.99957 1.87883 1.21785 1.25924 1.95437 1.22554 0.80482 0.98081 1.00204 1.21272 0.94788 0.93798 1.04253 1.21250 0.94740 0.94271 1.05137 1.20883 0.81957 0.91189 0.76613 1.90218 1.50746 1.50516 1.52770 1.41494 1.06268 1.04094 1.60103 1.19004 1.04938 1.03244 1.22170 0.87324 1.25476 0.95118 0.96825 0.95308 1.69646 1.12112 1.32345 1.35083 0.86965 0.80820 0.82697 0.79607 1.17897 1.21818 1.18168 1.18520 0.93539 0.85671 0.95977 1.21027 0.96173 0.96995 1.04082 1.20816 0.98682 0.92566 1.00303 1.20909 0.93929 0.98342 1.06058 1.21024 0.95678 0.96127 0.99932 1.22786 1.03281 0.91450 1.02972 0.91912 0.91354 0.91906 0.93551 0.93564 0.93218 0.93282 0.90785 0.90793 0.88388 0.89043 0.91058 0.84418 0.86912 0.87385 0.86982 0.80450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.15 0.38 -0.98 16 2 C 0.06 0.61 6.66 37.15 0.25 0.85 16 3 O -0.39 -5.59 10.34 -35.23 -0.36 -5.95 16 4 C 0.06 0.87 5.94 37.16 0.22 1.09 16 5 C -0.10 -1.66 4.89 -26.73 -0.13 -1.79 16 6 C -0.11 -2.06 4.53 -27.89 -0.13 -2.19 16 7 C 0.50 11.13 7.57 -10.99 -0.08 11.04 16 8 O -0.56 -12.95 12.39 5.55 0.07 -12.88 16 9 N -0.41 -9.84 2.30 -58.98 -0.14 -9.97 16 10 C -0.37 -9.18 8.01 -14.94 -0.12 -9.30 16 11 H 0.11 2.80 7.69 -52.49 -0.40 2.39 16 12 C 0.08 2.12 4.61 -17.49 -0.08 2.03 16 13 N -0.86 -22.75 13.96 55.49 0.77 -21.98 16 14 Si 0.87 20.94 23.84 -169.99 -4.05 16.88 16 15 H -0.25 -5.89 6.14 56.52 0.35 -5.54 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.26 -6.54 6.48 56.52 0.37 -6.17 16 18 C 0.16 3.78 4.13 -83.69 -0.35 3.43 16 19 C -0.16 -3.67 5.57 -39.37 -0.22 -3.89 16 20 C -0.10 -2.07 9.76 -39.61 -0.39 -2.45 16 21 C -0.17 -3.17 10.04 -39.53 -0.40 -3.57 16 22 C -0.11 -2.10 10.04 -39.61 -0.40 -2.50 16 23 C -0.19 -4.14 9.03 -39.37 -0.36 -4.49 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 34 H 0.09 1.57 7.74 -51.92 -0.40 1.17 16 35 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.14 3.26 5.70 -52.49 -0.30 2.96 16 37 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.18 4.10 4.58 -55.99 -0.26 3.85 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -28.39 323.14 -6.71 -35.10 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.08 Total: 6.63 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.79 Total: -12.70 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.64 Total: -31.95 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.30 Total: -18.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.05 Total: 16.88 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.39 -6.71 -35.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194660006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.624 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds