Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42905 * 109.47441 * 2 1 4 4 C 1.42895 * 113.99936 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46993 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47164 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.46973 * 184.92866 * 6 5 4 8 8 O 1.21283 * 120.00545 * 354.93579 * 7 6 5 9 9 N 1.34784 * 120.00104 * 174.93252 * 7 6 5 10 10 C 1.37142 * 119.99810 * 3.37539 * 9 7 6 11 11 H 1.08000 * 119.99996 * 305.54981 * 10 9 7 12 12 C 1.38887 * 119.99702 * 125.55110 * 10 9 7 13 13 N 1.31418 * 119.99695 * 181.41038 * 12 10 9 14 14 Si 1.86793 * 120.00249 * 1.40439 * 12 10 9 15 15 H 1.48497 * 109.47181 * 95.25569 * 14 12 10 16 16 H 1.48499 * 109.47310 * 215.25954 * 14 12 10 17 17 H 1.48508 * 109.47275 * 335.25523 * 14 12 10 18 18 C 1.39787 * 119.99939 * 183.37862 * 9 7 6 19 19 C 1.38963 * 120.07426 * 171.67853 * 18 9 7 20 20 C 1.38084 * 119.91926 * 179.97438 * 19 18 9 21 21 C 1.38307 * 120.07963 * 359.97438 * 20 19 18 22 22 C 1.38305 * 120.15586 * 0.02562 * 21 20 19 23 23 C 1.38087 * 120.07979 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47008 * 60.00097 * 1 2 3 25 25 H 1.08999 * 109.47378 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47557 * 300.00182 * 1 2 3 27 27 H 1.09003 * 109.47444 * 240.00122 * 2 1 3 28 28 H 1.09001 * 109.47008 * 119.99903 * 2 1 3 29 29 H 1.08999 * 109.47127 * 60.00416 * 4 3 2 30 30 H 1.09000 * 109.47472 * 299.99621 * 4 3 2 31 31 H 1.08999 * 109.46635 * 60.00372 * 5 4 3 32 32 H 1.08992 * 109.47024 * 300.00523 * 5 4 3 33 33 H 1.08995 * 109.46971 * 64.92774 * 6 5 4 34 34 H 1.09007 * 109.47145 * 304.92897 * 6 5 4 35 35 H 0.97006 * 120.00269 * 179.97438 * 13 12 10 36 36 H 1.07996 * 120.04195 * 359.70316 * 19 18 9 37 37 H 1.08003 * 119.96055 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.92453 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.96176 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.04221 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3506 3.0591 -0.0001 7 6 5.7396 4.5099 0.1212 8 8 4.8849 5.3702 0.1075 9 7 7.0376 4.8515 0.2451 10 6 8.0091 3.8851 0.1912 11 1 7.9613 3.0337 0.8540 12 6 9.0546 4.0014 -0.7157 13 7 9.9705 3.0616 -0.7865 14 14 9.1587 5.4933 -1.8348 15 1 10.0526 6.5094 -1.2233 16 1 9.7033 5.0851 -3.1546 17 1 7.8030 6.0717 -2.0162 18 6 7.3933 6.1909 0.4286 19 6 8.7077 6.5275 0.7286 20 6 9.0557 7.8515 0.9087 21 6 8.0979 8.8423 0.7903 22 6 6.7888 8.5109 0.4919 23 6 6.4336 7.1889 0.3104 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.8339 0.9764 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.4223 3.4223 0.8894 32 1 3.4230 3.4213 -0.8905 33 1 5.7472 2.6532 -0.9307 34 1 5.7593 2.5016 0.8427 35 1 10.7005 3.1426 -1.4202 36 1 9.4553 5.7541 0.8251 37 1 10.0770 8.1139 1.1423 38 1 8.3728 9.8770 0.9321 39 1 6.0435 9.2871 0.3998 40 1 5.4110 6.9308 0.0778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194660006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = -61.888603 kcal Electronic energy + Delta-G solvation = -21424.948862 eV Core-core repulsion = 18204.646829 eV Total energy + Delta-G solvation = -3220.302033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82898 -39.42382 -38.91035 -36.95267 -34.85924 -34.16145 -32.02927 -31.73158 -30.75626 -27.78880 -26.99514 -23.94832 -23.64997 -23.14969 -22.25571 -21.07712 -19.78412 -18.16657 -17.73039 -17.51586 -17.33572 -17.03756 -16.49758 -15.94514 -15.51143 -15.29787 -15.17419 -14.87204 -14.66364 -14.25550 -14.15141 -13.99654 -13.49801 -13.44364 -13.17924 -12.69757 -12.64022 -12.48125 -12.44661 -12.35336 -12.06769 -11.89305 -11.85332 -11.72243 -11.25802 -10.87121 -10.51940 -10.12761 -9.67080 -8.86035 -8.51971 -6.51123 0.41605 0.52842 1.23404 1.29968 1.39962 1.81566 2.13341 2.34225 2.73470 2.86302 3.08635 3.81088 4.02229 4.13035 4.16914 4.19298 4.19903 4.36990 4.42610 4.47534 4.51648 4.55347 4.60086 4.66743 4.77099 4.78649 4.90297 4.91286 5.04344 5.17181 5.22201 5.26261 5.31772 5.50630 5.58125 5.65868 5.72159 5.98179 6.03278 6.31033 6.38920 6.83107 7.21341 7.54173 8.49247 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.004625 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.204950 B = 6052.011198 C = 7007.067337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.414 6.414 4 C 0.069 3.931 5 C -0.092 4.092 6 C -0.106 4.106 7 C 0.490 3.510 8 O -0.573 6.573 9 N -0.425 5.425 10 C -0.357 4.357 11 H 0.094 0.906 12 C 0.058 3.942 13 N -0.888 5.888 14 Si 0.916 3.084 15 H -0.241 1.241 16 H -0.291 1.291 17 H -0.280 1.280 18 C 0.129 3.871 19 C -0.184 4.184 20 C -0.106 4.106 21 C -0.160 4.160 22 C -0.105 4.105 23 C -0.207 4.207 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.283 0.717 36 H 0.120 0.880 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 -0.772 1.115 8.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.335 6.335 4 C -0.008 4.008 5 C -0.131 4.131 6 C -0.145 4.145 7 C 0.283 3.717 8 O -0.457 6.457 9 N -0.135 5.135 10 C -0.484 4.484 11 H 0.112 0.888 12 C -0.149 4.149 13 N -0.523 5.523 14 Si 0.742 3.258 15 H -0.165 1.165 16 H -0.219 1.219 17 H -0.206 1.206 18 C 0.033 3.967 19 C -0.204 4.204 20 C -0.124 4.124 21 C -0.179 4.179 22 C -0.123 4.123 23 C -0.227 4.227 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.975 -0.390 1.025 9.042 hybrid contribution 0.812 0.089 -0.529 0.973 sum -8.163 -0.302 0.496 8.183 Atomic orbital electron populations 1.21767 0.92822 1.03428 1.02601 1.22699 0.96453 0.82824 1.00986 1.87847 1.21700 1.28278 1.95642 1.22443 0.80812 0.96138 1.01381 1.21128 0.93139 0.95712 1.03076 1.21237 0.96133 0.91676 1.05478 1.21558 0.81412 0.92757 0.75945 1.90209 1.50854 1.51384 1.53297 1.41620 1.06523 1.04346 1.61018 1.18857 1.05065 1.03072 1.21408 0.88797 1.25807 0.95055 0.97990 0.96042 1.69685 1.12932 1.33477 1.36217 0.86321 0.79552 0.81377 0.78529 1.16469 1.21900 1.20575 1.18812 0.94527 0.85698 0.97621 1.21040 0.95386 0.98150 1.05853 1.21246 1.00671 0.91544 0.98946 1.21396 0.92872 1.00211 1.03375 1.21441 0.97237 0.95474 0.98179 1.22809 1.02625 0.92878 1.04402 0.92428 0.88869 0.92402 0.92518 0.92487 0.92061 0.92035 0.91971 0.91920 0.88160 0.88193 0.90658 0.86254 0.83929 0.82887 0.83607 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.05 0.93 6.66 71.98 0.48 1.41 16 3 O -0.41 -11.53 10.34 -148.98 -1.54 -13.07 16 4 C 0.07 1.83 5.94 71.98 0.43 2.26 16 5 C -0.09 -3.01 4.89 30.60 0.15 -2.86 16 6 C -0.11 -3.87 4.53 29.85 0.14 -3.74 16 7 C 0.49 22.29 7.57 87.65 0.66 22.96 16 8 O -0.57 -27.24 12.39 -3.04 -0.04 -27.28 16 9 N -0.42 -20.79 2.30 -458.89 -1.06 -21.85 16 10 C -0.36 -18.27 8.01 84.02 0.67 -17.60 16 11 H 0.09 4.99 7.69 -2.91 -0.02 4.97 16 12 C 0.06 3.01 4.61 84.91 0.39 3.40 16 13 N -0.89 -47.56 13.96 21.65 0.30 -47.26 16 14 Si 0.92 43.47 23.84 68.60 1.64 45.10 16 15 H -0.24 -10.74 6.14 99.48 0.61 -10.13 16 16 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 17 H -0.28 -14.30 6.48 99.48 0.64 -13.66 16 18 C 0.13 6.14 4.13 38.22 0.16 6.30 16 19 C -0.18 -8.18 5.57 22.41 0.12 -8.06 16 20 C -0.11 -3.85 9.76 22.25 0.22 -3.64 16 21 C -0.16 -5.18 10.04 22.30 0.22 -4.96 16 22 C -0.10 -3.74 10.04 22.25 0.22 -3.52 16 23 C -0.21 -9.17 9.03 22.41 0.20 -8.96 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.10 3.47 7.74 -2.38 -0.02 3.45 16 35 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 36 H 0.12 5.69 5.70 -2.91 -0.02 5.68 16 37 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 39 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 40 H 0.17 7.69 4.58 -58.46 -0.27 7.43 16 Total: -1.00 -61.71 323.14 4.71 -57.00 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.60 Total: 26.07 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.81 Total: -18.71 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.76 Total: -69.11 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.58 Total: -40.35 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.64 Total: 45.10 kcal Total: -61.71 4.71 -57.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194660006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.888 kcal (2) G-P(sol) polarization free energy of solvation -61.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds