Wall clock time and date at job start Mon Mar 30 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46976 * 325.00337 * 12 11 9 14 14 C 1.53002 * 109.47205 * 85.00140 * 12 11 9 15 15 C 1.50698 * 109.47408 * 205.00521 * 12 11 9 16 16 H 1.07999 * 119.99829 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00459 * 180.02562 * 15 12 11 18 18 N 1.31521 * 119.99494 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00222 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47117 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46928 * 119.99820 * 19 17 15 22 22 H 1.48501 * 109.47061 * 239.99526 * 19 17 15 23 23 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 24 24 C 1.38145 * 120.05942 * 359.97438 * 23 7 6 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 31 31 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 32 32 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 33 33 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 34 34 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.46877 * 59.99890 * 14 12 11 36 36 H 1.08998 * 109.46856 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.46764 * 299.99916 * 14 12 11 38 38 H 0.96998 * 119.99764 * 180.02562 * 18 17 15 39 39 H 1.08009 * 119.97583 * 179.97438 * 23 7 6 40 40 H 1.08000 * 120.03441 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.1406 2.8850 3.6743 14 6 10.1235 0.9707 3.5740 15 6 11.1758 3.1647 3.0963 16 1 11.5944 3.5696 2.1868 17 6 11.8231 3.3570 4.2984 18 7 11.3135 2.8635 5.4059 19 14 13.4238 4.3183 4.3540 20 1 13.7819 4.7631 2.9833 21 1 13.2586 5.5042 5.2324 22 1 14.5035 3.4513 4.8906 23 6 5.2549 2.9853 0.0010 24 6 3.8850 2.8070 0.0003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.7884 -0.5724 0.0117 31 1 6.2281 -0.2456 0.0032 32 1 8.0671 1.2509 -0.5113 33 1 7.8338 3.0155 -0.5117 34 1 10.0263 2.4075 0.9329 35 1 10.8676 0.4744 2.9511 36 1 10.4838 1.0182 4.6017 37 1 9.1897 0.4095 3.5415 38 1 11.7687 2.9990 6.2516 39 1 5.6690 3.9828 0.0011 40 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194668752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:21 Heat of formation + Delta-G solvation = -64.972513 kcal Electronic energy + Delta-G solvation = -20657.241253 eV Core-core repulsion = 17436.805492 eV Total energy + Delta-G solvation = -3220.435761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19096 -38.92425 -37.41190 -34.73644 -32.63971 -32.30332 -31.27539 -30.81267 -28.96199 -26.49823 -25.23059 -24.13241 -22.26983 -21.63541 -20.59571 -19.32476 -18.29386 -17.08184 -16.23103 -16.04223 -15.77302 -15.42776 -14.94351 -14.58509 -14.25060 -13.82428 -13.50518 -13.47726 -13.32500 -12.95735 -12.79397 -12.37298 -12.02106 -11.87882 -11.75498 -11.54967 -11.39995 -11.05625 -10.92728 -10.79648 -10.71479 -10.66363 -10.28238 -10.22788 -9.02600 -8.99522 -8.87811 -8.53775 -7.97169 -7.86018 -6.11138 -4.20316 1.46364 1.51832 3.11825 3.24054 3.31748 3.34443 3.47155 3.78042 4.25840 4.48134 4.68129 4.69683 4.89391 4.93886 4.94936 5.02063 5.21009 5.24289 5.38615 5.46157 5.52277 5.62421 5.70542 5.71795 5.77593 5.85599 6.13072 6.34760 6.42928 6.75827 6.83281 6.86049 6.98922 7.17941 7.42357 7.50376 7.59669 7.72004 7.94261 8.17262 8.71489 8.81173 9.19507 9.47722 10.94881 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041755 B = 0.002956 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.424490 B = 9470.217978 C = 9629.142977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.121 3.879 5 C -0.207 4.207 6 C -0.067 4.067 7 C -0.089 4.089 8 C -0.103 4.103 9 C 0.500 3.500 10 O -0.547 6.547 11 N -0.712 5.712 12 C 0.264 3.736 13 H 0.048 0.952 14 C -0.146 4.146 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.066 4.066 24 C -0.151 4.151 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.388 0.612 35 H 0.025 0.975 36 H 0.089 0.911 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.128 0.872 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.533 -5.016 -13.866 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.076 3.924 5 C -0.226 4.226 6 C -0.085 4.085 7 C -0.090 4.090 8 C -0.143 4.143 9 C 0.285 3.715 10 O -0.426 6.426 11 N -0.360 5.360 12 C 0.162 3.838 13 H 0.065 0.935 14 C -0.205 4.205 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.084 4.084 24 C -0.169 4.169 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.220 0.780 35 H 0.045 0.955 36 H 0.108 0.892 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.199 -4.961 -12.966 20.585 hybrid contribution 1.351 0.230 -0.154 1.379 sum -13.847 -4.731 -13.119 19.653 Atomic orbital electron populations 1.21770 0.92922 1.02715 1.03450 1.22744 0.95681 0.82296 1.01387 1.86038 1.19373 1.28998 1.88984 1.18936 0.81922 0.94249 0.97296 1.21120 0.94249 0.97747 1.09440 1.20762 0.94206 0.96710 0.96792 1.19263 0.94276 0.93224 1.02235 1.20696 0.92798 1.04334 0.96502 1.20358 0.83228 0.77647 0.90290 1.90677 1.55372 1.50354 1.46168 1.46533 1.06615 1.71506 1.11385 1.18720 0.94617 0.93654 0.76794 0.93465 1.22072 0.97345 0.97213 1.03892 1.21268 1.06945 1.34713 0.94136 0.92035 1.24907 0.97900 0.95624 0.95407 1.69921 1.39187 1.44516 0.98504 0.86393 0.82924 0.79633 0.78137 1.19741 1.20887 1.20900 1.20808 0.92061 0.98707 0.96848 1.20332 0.95077 0.94647 1.06866 0.90495 0.91516 0.91627 0.92190 0.92033 0.85826 0.85998 0.88704 0.88559 0.77981 0.95537 0.89216 0.96713 0.92656 0.85458 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.49 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.05 10.14 -19.41 -0.20 -4.25 16 4 C 0.12 1.67 6.69 -39.21 -0.26 1.41 16 5 C -0.21 -2.73 9.04 -39.43 -0.36 -3.09 16 6 C -0.07 -0.94 9.69 -39.61 -0.38 -1.32 16 7 C -0.09 -1.32 4.37 -104.60 -0.46 -1.78 16 8 C -0.10 -1.46 5.83 -29.03 -0.17 -1.63 16 9 C 0.50 9.95 7.79 -10.98 -0.09 9.86 16 10 O -0.55 -13.36 15.70 5.56 0.09 -13.27 16 11 N -0.71 -14.79 5.07 -54.93 -0.28 -15.07 16 12 C 0.26 6.79 2.56 -69.08 -0.18 6.61 16 13 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 14 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 15 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.15 11.32 55.43 0.63 -24.53 16 19 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 C -0.07 -0.94 9.69 -39.61 -0.38 -1.33 16 24 C -0.15 -2.09 9.99 -39.43 -0.39 -2.48 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.47 7.68 -51.93 -0.40 0.08 16 29 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 30 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 31 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.10 1.13 8.08 -51.93 -0.42 0.72 16 34 H 0.39 6.85 8.54 -40.82 -0.35 6.50 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -32.59 338.67 -7.76 -40.35 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.95 Total: 5.85 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.14 Total: -9.88 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.35 Total: -39.60 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.11 Total: -17.52 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.59 -7.76 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194668752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.625 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds