Wall clock time and date at job start Mon Mar 30 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46976 * 325.00337 * 12 11 9 14 14 C 1.53002 * 109.47205 * 85.00140 * 12 11 9 15 15 C 1.50698 * 109.47408 * 205.00521 * 12 11 9 16 16 H 1.07999 * 119.99829 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00459 * 180.02562 * 15 12 11 18 18 N 1.31521 * 119.99494 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00222 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47117 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46928 * 119.99820 * 19 17 15 22 22 H 1.48501 * 109.47061 * 239.99526 * 19 17 15 23 23 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 24 24 C 1.38145 * 120.05942 * 359.97438 * 23 7 6 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 31 31 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 32 32 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 33 33 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 34 34 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.46877 * 59.99890 * 14 12 11 36 36 H 1.08998 * 109.46856 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.46764 * 299.99916 * 14 12 11 38 38 H 0.96998 * 119.99764 * 180.02562 * 18 17 15 39 39 H 1.08009 * 119.97583 * 179.97438 * 23 7 6 40 40 H 1.08000 * 120.03441 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.1406 2.8850 3.6743 14 6 10.1235 0.9707 3.5740 15 6 11.1758 3.1647 3.0963 16 1 11.5944 3.5696 2.1868 17 6 11.8231 3.3570 4.2984 18 7 11.3135 2.8635 5.4059 19 14 13.4238 4.3183 4.3540 20 1 13.7819 4.7631 2.9833 21 1 13.2586 5.5042 5.2324 22 1 14.5035 3.4513 4.8906 23 6 5.2549 2.9853 0.0010 24 6 3.8850 2.8070 0.0003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.7884 -0.5724 0.0117 31 1 6.2281 -0.2456 0.0032 32 1 8.0671 1.2509 -0.5113 33 1 7.8338 3.0155 -0.5117 34 1 10.0263 2.4075 0.9329 35 1 10.8676 0.4744 2.9511 36 1 10.4838 1.0182 4.6017 37 1 9.1897 0.4095 3.5415 38 1 11.7687 2.9990 6.2516 39 1 5.6690 3.9828 0.0011 40 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194668752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:21 Heat of formation + Delta-G solvation = -85.565605 kcal Electronic energy + Delta-G solvation = -20658.134236 eV Core-core repulsion = 17436.805492 eV Total energy + Delta-G solvation = -3221.328745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23738 -40.40397 -38.51495 -36.63626 -34.30240 -33.54516 -32.28785 -31.78671 -30.74514 -27.73210 -27.30584 -24.95069 -23.56527 -22.85083 -21.96930 -21.02065 -19.25023 -18.85243 -17.43905 -17.22875 -17.01940 -17.01206 -16.40344 -15.91483 -15.68505 -15.14320 -14.77747 -14.51710 -14.40339 -14.30323 -14.14242 -13.71613 -13.39894 -13.05224 -13.00931 -12.80813 -12.75237 -12.68898 -12.49054 -12.38279 -12.26414 -12.09898 -11.65401 -11.61195 -11.07853 -10.71077 -10.55615 -9.91993 -9.69262 -9.02780 -8.16834 -6.34363 0.42210 0.44714 1.44757 1.45670 1.57909 1.91634 2.27355 2.36958 2.60219 3.00593 3.13792 3.80449 3.84202 3.96515 4.05171 4.14423 4.27698 4.35205 4.37941 4.45228 4.54604 4.70862 4.75950 4.77336 4.91423 4.93698 4.93986 5.10935 5.11658 5.19895 5.31913 5.39986 5.46216 5.64050 5.69003 5.72113 5.84880 5.94209 6.12066 6.47919 6.75034 7.04586 7.34216 7.65097 8.89673 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041755 B = 0.002956 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.424490 B = 9470.217978 C = 9629.142977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.333 6.333 4 C 0.112 3.888 5 C -0.212 4.212 6 C -0.078 4.078 7 C -0.111 4.111 8 C -0.087 4.087 9 C 0.497 3.503 10 O -0.598 6.598 11 N -0.708 5.708 12 C 0.270 3.730 13 H -0.006 1.006 14 C -0.133 4.133 15 C -0.544 4.544 16 H 0.075 0.925 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.974 3.026 20 H -0.258 1.258 21 H -0.285 1.285 22 H -0.279 1.279 23 C -0.077 4.077 24 C -0.166 4.166 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.406 0.594 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.010 0.990 38 H 0.265 0.735 39 H 0.138 0.862 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.027 -5.266 -15.886 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.248 6.248 4 C 0.067 3.933 5 C -0.230 4.230 6 C -0.096 4.096 7 C -0.112 4.112 8 C -0.126 4.126 9 C 0.285 3.715 10 O -0.480 6.480 11 N -0.357 5.357 12 C 0.166 3.834 13 H 0.012 0.988 14 C -0.192 4.192 15 C -0.582 4.582 16 H 0.093 0.907 17 C -0.189 4.189 18 N -0.558 5.558 19 Si 0.798 3.202 20 H -0.182 1.182 21 H -0.211 1.211 22 H -0.205 1.205 23 C -0.095 4.095 24 C -0.184 4.184 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.242 0.758 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.156 0.844 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.691 -5.216 -15.042 21.663 hybrid contribution 1.065 0.268 0.487 1.201 sum -13.626 -4.949 -14.556 20.543 Atomic orbital electron populations 1.21801 0.91279 1.04210 1.03192 1.23063 0.97039 0.80893 1.02111 1.86034 1.18729 1.31240 1.88780 1.19140 0.82667 0.94506 0.96955 1.21390 0.94055 0.98738 1.08833 1.21048 0.94905 0.97047 0.96560 1.19453 0.94671 0.93731 1.03302 1.20661 0.92465 1.07224 0.92284 1.21366 0.82151 0.75662 0.92361 1.90656 1.56461 1.52330 1.48522 1.46288 1.07733 1.71752 1.09967 1.18299 0.93140 0.93161 0.78789 0.98794 1.21889 0.97355 0.97253 1.02694 1.21603 1.07073 1.34742 0.94771 0.90666 1.25845 1.01475 0.96554 0.95013 1.70075 1.40817 1.45792 0.99149 0.85272 0.78416 0.77841 0.78647 1.18165 1.21102 1.20482 1.21039 0.92381 0.99296 0.96797 1.20576 0.95357 0.95394 1.07091 0.88107 0.92149 0.91503 0.90795 0.91901 0.83653 0.84658 0.85455 0.85649 0.75827 0.93942 0.91724 0.97087 0.92632 0.84448 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.04 0.73 5.46 71.98 0.39 1.12 16 3 O -0.33 -8.20 10.14 -92.39 -0.94 -9.13 16 4 C 0.11 3.04 6.69 22.51 0.15 3.19 16 5 C -0.21 -5.34 9.04 22.37 0.20 -5.14 16 6 C -0.08 -2.08 9.69 22.25 0.22 -1.86 16 7 C -0.11 -3.14 4.37 -19.85 -0.09 -3.23 16 8 C -0.09 -2.25 5.83 29.10 0.17 -2.08 16 9 C 0.50 19.43 7.79 87.66 0.68 20.11 16 10 O -0.60 -29.77 15.70 -3.03 -0.05 -29.82 16 11 N -0.71 -28.85 5.07 -446.09 -2.26 -31.11 16 12 C 0.27 14.10 2.56 44.25 0.11 14.21 16 13 H -0.01 -0.37 7.58 -2.38 -0.02 -0.38 16 14 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 15 C -0.54 -28.77 8.73 25.60 0.22 -28.55 16 16 H 0.08 3.69 7.74 -2.91 -0.02 3.66 16 17 C 0.01 0.58 5.30 84.65 0.45 1.03 16 18 N -0.92 -53.37 11.32 21.45 0.24 -53.13 16 19 Si 0.97 42.05 29.54 68.60 2.03 44.07 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.08 -2.15 9.69 22.25 0.22 -1.93 16 24 C -0.17 -4.53 9.99 22.37 0.22 -4.31 16 25 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16 29 H 0.06 1.03 7.65 -2.39 -0.02 1.01 16 30 H 0.15 2.87 6.30 -2.91 -0.02 2.85 16 31 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.13 2.50 8.08 -2.39 -0.02 2.48 16 33 H 0.13 2.54 8.08 -2.39 -0.02 2.52 16 34 H 0.41 13.48 8.54 -92.71 -0.79 12.69 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -72.17 338.67 3.62 -68.54 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.24 Total: 25.22 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.36 Total: -14.65 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.02 Total: -84.24 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.98 Total: -38.95 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.17 3.62 -68.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194668752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.024 kcal (2) G-P(sol) polarization free energy of solvation -72.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds