Wall clock time and date at job start Mon Mar 30 2020 01:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46904 * 111.00064 * 2 1 4 4 C 1.50694 * 109.46884 * 293.95343 * 3 2 1 5 5 H 1.07996 * 120.00599 * 359.97438 * 4 3 2 6 6 C 1.37887 * 119.99722 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99817 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99796 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46732 * 90.00345 * 8 6 4 10 10 H 1.48505 * 109.46858 * 209.99829 * 8 6 4 11 11 H 1.48500 * 109.47396 * 329.99992 * 8 6 4 12 12 C 1.46903 * 110.99800 * 123.95540 * 2 1 3 13 13 C 1.52994 * 109.47265 * 66.05003 * 12 2 1 14 14 C 1.50700 * 109.47125 * 179.97438 * 13 12 2 15 15 C 1.38255 * 119.94670 * 89.99827 * 14 13 12 16 16 C 1.38196 * 120.11173 * 180.31458 * 15 14 13 17 17 C 1.38702 * 120.06979 * 359.51950 * 16 15 14 18 18 C 1.38976 * 119.81854 * 0.36316 * 17 16 15 19 19 C 1.38201 * 119.94410 * 269.97635 * 14 13 12 20 20 O 1.36106 * 120.78195 * 180.02562 * 18 17 16 21 21 C 1.43170 * 116.71819 * 342.81004 * 20 18 17 22 22 C 1.53473 * 108.24794 * 46.16489 * 21 20 18 23 23 O 1.36101 * 119.39791 * 180.02562 * 17 16 15 24 24 H 1.08996 * 109.47352 * 296.04376 * 1 2 3 25 25 H 1.09000 * 109.47510 * 56.04382 * 1 2 3 26 26 H 1.09010 * 109.47254 * 176.04700 * 1 2 3 27 27 H 1.09000 * 109.46677 * 53.95563 * 3 2 1 28 28 H 1.09000 * 109.47048 * 173.94931 * 3 2 1 29 29 H 0.96993 * 119.99540 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47381 * 306.04421 * 12 2 1 31 31 H 1.09005 * 109.46484 * 186.04685 * 12 2 1 32 32 H 1.08997 * 109.47396 * 59.99427 * 13 12 2 33 33 H 1.09005 * 109.47110 * 299.99299 * 13 12 2 34 34 H 1.08002 * 119.93919 * 0.02892 * 15 14 13 35 35 H 1.07998 * 119.96440 * 179.75357 * 16 15 14 36 36 H 1.08008 * 119.96288 * 359.96279 * 19 14 13 37 37 H 1.09002 * 109.70738 * 165.84852 * 21 20 18 38 38 H 1.08992 * 109.70951 * 286.47831 * 21 20 18 39 39 H 1.08997 * 109.71202 * 59.95098 * 22 21 20 40 40 H 1.09000 * 109.70748 * 180.57584 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0268 3.3495 -1.5284 7 7 1.7134 3.9393 -2.6614 8 14 2.9987 4.2766 -0.2303 9 1 4.4513 4.0643 -0.4540 10 1 2.6904 5.7263 -0.3225 11 1 2.6271 3.7763 1.1176 12 6 1.9953 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9703 14 6 2.1720 -3.0285 2.1370 15 6 1.3977 -3.2043 3.2688 16 6 1.8925 -3.9188 4.3433 17 6 3.1639 -4.4702 4.2850 18 6 3.9413 -4.2956 3.1463 19 6 3.4407 -3.5727 2.0736 20 8 5.1913 -4.8285 3.0678 21 6 5.7996 -5.2273 4.3010 22 6 4.7659 -6.0201 5.1124 23 8 3.6373 -5.1718 5.3508 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0253 -0.0709 27 1 1.5610 1.9273 0.8310 28 1 3.0797 1.3444 0.1083 29 1 1.9880 4.8554 -2.8233 30 1 1.5610 -0.3873 2.0628 31 1 3.0796 -0.6611 1.1756 32 1 2.0657 -2.6213 0.0451 33 1 0.5471 -2.3476 0.9323 34 1 0.4062 -2.7785 3.3151 35 1 1.2871 -4.0513 5.2278 36 1 4.0432 -3.4348 1.1878 37 1 6.6667 -5.8553 4.0969 38 1 6.1079 -4.3446 4.8611 39 1 4.4527 -6.8994 4.5497 40 1 5.2021 -6.3274 6.0629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258837414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:37 Heat of formation + Delta-G solvation = -43.875557 kcal Electronic energy + Delta-G solvation = -20915.315559 eV Core-core repulsion = 17695.794631 eV Total energy + Delta-G solvation = -3219.520929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39852 -38.44437 -37.42464 -36.68295 -33.06257 -32.10649 -31.05260 -29.80253 -28.18760 -27.21999 -25.48456 -24.49388 -22.89570 -21.90593 -20.44209 -19.94373 -18.72582 -17.42649 -17.31858 -16.79445 -15.61440 -15.36683 -14.96374 -14.88172 -14.60661 -14.41498 -14.08246 -14.00949 -13.92394 -13.30937 -13.03301 -12.73674 -12.34374 -11.99750 -11.91275 -11.68710 -11.36433 -11.28838 -11.02990 -10.96875 -10.64909 -10.58226 -10.45767 -10.14567 -9.83815 -9.27103 -8.68429 -8.54838 -8.08965 -7.34913 -6.03321 -4.00346 1.19854 1.22079 2.80227 3.00619 3.30255 3.37441 3.39994 3.60169 3.94589 4.43992 4.45943 4.48688 4.57791 4.68706 4.88287 5.07061 5.10776 5.14329 5.28609 5.31343 5.38105 5.43003 5.62282 5.78960 5.95696 6.01196 6.06068 6.13689 6.17212 6.32374 6.41040 6.53325 6.65143 6.72159 6.74337 6.90216 7.02877 7.25688 7.61844 7.92462 8.08249 8.68289 9.05435 9.58672 11.09855 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.003296 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.873332 B = 8493.706870 C = 8930.187289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.533 5.533 3 C 0.161 3.839 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.059 3.941 13 C -0.076 4.076 14 C -0.065 4.065 15 C -0.112 4.112 16 C -0.112 4.112 17 C 0.037 3.963 18 C 0.051 3.949 19 C -0.108 4.108 20 O -0.308 6.308 21 C 0.020 3.980 22 C 0.021 3.979 23 O -0.310 6.310 24 H 0.011 0.989 25 H 0.079 0.921 26 H 0.050 0.950 27 H -0.012 1.012 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -20.283 16.589 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.257 5.257 3 C 0.035 3.965 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.069 4.069 13 C -0.113 4.113 14 C -0.066 4.066 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.007 4.007 18 C 0.006 3.994 19 C -0.127 4.127 20 O -0.222 6.222 21 C -0.055 4.055 22 C -0.055 4.055 23 O -0.225 6.225 24 H 0.029 0.971 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.006 0.994 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.705 -20.355 16.079 26.363 hybrid contribution 0.549 0.884 1.548 1.865 sum 5.253 -19.472 17.627 26.785 Atomic orbital electron populations 1.22295 0.88371 0.99990 1.00807 1.61927 1.07406 1.16417 1.39908 1.20184 0.94903 0.84158 0.97243 1.21050 1.35572 0.97175 1.00871 0.90073 1.24903 0.95821 0.97367 0.95279 1.69894 1.46970 1.13283 1.23890 0.86874 0.80927 0.79266 0.82780 1.20124 1.21202 1.19298 1.22059 1.00144 0.92190 0.92548 1.20635 1.01117 0.94331 0.95249 1.19773 0.93165 0.97398 0.96241 1.20872 1.00405 0.99429 0.92343 1.20388 0.92395 1.00293 0.99960 1.18855 0.94409 0.99301 0.88142 1.18873 0.85105 0.99630 0.95807 1.20396 0.96289 0.97791 0.98225 1.86318 1.27517 1.77111 1.31274 1.23606 0.96144 1.00264 0.85515 1.23595 0.86482 0.92625 1.02755 1.86290 1.47019 1.56946 1.32264 0.97092 0.90200 0.93127 0.99421 0.95865 0.92684 0.95777 0.91357 0.89902 0.90671 0.85036 0.85000 0.84530 0.86195 0.90545 0.90616 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.14 60.06 0.55 1.19 16 2 N -0.53 -11.23 4.75 -244.38 -1.16 -12.39 16 3 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 4 C -0.51 -14.59 9.01 -34.44 -0.31 -14.90 16 5 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 8 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 12 C 0.06 1.02 4.94 -3.83 -0.02 1.00 16 13 C -0.08 -1.06 5.27 -27.89 -0.15 -1.20 16 14 C -0.06 -0.84 5.13 -104.63 -0.54 -1.38 16 15 C -0.11 -1.33 9.69 -39.59 -0.38 -1.71 16 16 C -0.11 -1.31 9.96 -39.43 -0.39 -1.70 16 17 C 0.04 0.47 6.49 -39.14 -0.25 0.22 16 18 C 0.05 0.66 6.49 -39.14 -0.25 0.41 16 19 C -0.11 -1.44 9.61 -39.42 -0.38 -1.82 16 20 O -0.31 -3.68 10.42 -32.86 -0.34 -4.03 16 21 C 0.02 0.16 7.26 37.40 0.27 0.43 16 22 C 0.02 0.16 7.26 37.40 0.27 0.43 16 23 O -0.31 -3.48 10.42 -32.85 -0.34 -3.83 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 26 H 0.05 0.80 6.47 -51.92 -0.34 0.47 16 27 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 28 H 0.02 0.58 7.36 -51.93 -0.38 0.19 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 32 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 33 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.14 1.74 8.06 -52.48 -0.42 1.31 16 37 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -32.82 326.25 -8.50 -41.32 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.97 Total: -2.84 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.70 Total: -13.20 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.39 Total: -39.42 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.68 Total: -7.85 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.82 -8.50 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258837414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.559 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds