Wall clock time and date at job start Mon Mar 30 2020 01:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46904 * 111.00064 * 2 1 4 4 C 1.50694 * 109.46884 * 293.95343 * 3 2 1 5 5 H 1.07996 * 120.00599 * 359.97438 * 4 3 2 6 6 C 1.37887 * 119.99722 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99817 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99796 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46732 * 90.00345 * 8 6 4 10 10 H 1.48505 * 109.46858 * 209.99829 * 8 6 4 11 11 H 1.48500 * 109.47396 * 329.99992 * 8 6 4 12 12 C 1.46903 * 110.99800 * 123.95540 * 2 1 3 13 13 C 1.52994 * 109.47265 * 66.05003 * 12 2 1 14 14 C 1.50700 * 109.47125 * 179.97438 * 13 12 2 15 15 C 1.38255 * 119.94670 * 89.99827 * 14 13 12 16 16 C 1.38196 * 120.11173 * 180.31458 * 15 14 13 17 17 C 1.38702 * 120.06979 * 359.51950 * 16 15 14 18 18 C 1.38976 * 119.81854 * 0.36316 * 17 16 15 19 19 C 1.38201 * 119.94410 * 269.97635 * 14 13 12 20 20 O 1.36106 * 120.78195 * 180.02562 * 18 17 16 21 21 C 1.43170 * 116.71819 * 342.81004 * 20 18 17 22 22 C 1.53473 * 108.24794 * 46.16489 * 21 20 18 23 23 O 1.36101 * 119.39791 * 180.02562 * 17 16 15 24 24 H 1.08996 * 109.47352 * 296.04376 * 1 2 3 25 25 H 1.09000 * 109.47510 * 56.04382 * 1 2 3 26 26 H 1.09010 * 109.47254 * 176.04700 * 1 2 3 27 27 H 1.09000 * 109.46677 * 53.95563 * 3 2 1 28 28 H 1.09000 * 109.47048 * 173.94931 * 3 2 1 29 29 H 0.96993 * 119.99540 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47381 * 306.04421 * 12 2 1 31 31 H 1.09005 * 109.46484 * 186.04685 * 12 2 1 32 32 H 1.08997 * 109.47396 * 59.99427 * 13 12 2 33 33 H 1.09005 * 109.47110 * 299.99299 * 13 12 2 34 34 H 1.08002 * 119.93919 * 0.02892 * 15 14 13 35 35 H 1.07998 * 119.96440 * 179.75357 * 16 15 14 36 36 H 1.08008 * 119.96288 * 359.96279 * 19 14 13 37 37 H 1.09002 * 109.70738 * 165.84852 * 21 20 18 38 38 H 1.08992 * 109.70951 * 286.47831 * 21 20 18 39 39 H 1.08997 * 109.71202 * 59.95098 * 22 21 20 40 40 H 1.09000 * 109.70748 * 180.57584 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0268 3.3495 -1.5284 7 7 1.7134 3.9393 -2.6614 8 14 2.9987 4.2766 -0.2303 9 1 4.4513 4.0643 -0.4540 10 1 2.6904 5.7263 -0.3225 11 1 2.6271 3.7763 1.1176 12 6 1.9953 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9703 14 6 2.1720 -3.0285 2.1370 15 6 1.3977 -3.2043 3.2688 16 6 1.8925 -3.9188 4.3433 17 6 3.1639 -4.4702 4.2850 18 6 3.9413 -4.2956 3.1463 19 6 3.4407 -3.5727 2.0736 20 8 5.1913 -4.8285 3.0678 21 6 5.7996 -5.2273 4.3010 22 6 4.7659 -6.0201 5.1124 23 8 3.6373 -5.1718 5.3508 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0253 -0.0709 27 1 1.5610 1.9273 0.8310 28 1 3.0797 1.3444 0.1083 29 1 1.9880 4.8554 -2.8233 30 1 1.5610 -0.3873 2.0628 31 1 3.0796 -0.6611 1.1756 32 1 2.0657 -2.6213 0.0451 33 1 0.5471 -2.3476 0.9323 34 1 0.4062 -2.7785 3.3151 35 1 1.2871 -4.0513 5.2278 36 1 4.0432 -3.4348 1.1878 37 1 6.6667 -5.8553 4.0969 38 1 6.1079 -4.3446 4.8611 39 1 4.4527 -6.8994 4.5497 40 1 5.2021 -6.3274 6.0629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258837414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:36 Heat of formation + Delta-G solvation = -65.785390 kcal Electronic energy + Delta-G solvation = -20916.265641 eV Core-core repulsion = 17695.794631 eV Total energy + Delta-G solvation = -3220.471010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20619 -39.46919 -38.23352 -38.14839 -34.85707 -33.57723 -31.86762 -30.87026 -29.72576 -28.54813 -26.86533 -25.47509 -24.04762 -23.20361 -21.78166 -21.17227 -19.54808 -18.96386 -18.22344 -18.15193 -16.64344 -16.44153 -16.36903 -16.13277 -15.93474 -15.38773 -15.25135 -15.04695 -14.89486 -14.81044 -14.36303 -14.07086 -13.93146 -13.30470 -13.19041 -12.81677 -12.71740 -12.64416 -12.29399 -12.25419 -11.99552 -11.98575 -11.77607 -11.55208 -11.42105 -11.37004 -10.77856 -9.60303 -9.03418 -8.97371 -8.27990 -6.31072 0.26297 0.31164 1.34959 1.35806 1.46694 2.05251 2.29941 2.34581 2.66775 3.05090 3.27216 3.30779 3.67880 3.93679 3.95595 4.06551 4.12742 4.29053 4.33166 4.36450 4.45603 4.51128 4.58112 4.61580 4.68138 4.70826 4.83096 4.94591 5.03978 5.05642 5.13486 5.16117 5.20062 5.32186 5.53674 5.62085 5.71601 5.91866 5.99874 6.38654 6.42197 6.66464 6.75493 7.32565 8.88621 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.003296 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.873332 B = 8493.706870 C = 8930.187289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.550 5.550 3 C 0.170 3.830 4 C -0.516 4.516 5 H 0.040 0.960 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.946 3.054 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.253 1.253 12 C 0.062 3.938 13 C -0.063 4.063 14 C -0.074 4.074 15 C -0.111 4.111 16 C -0.116 4.116 17 C 0.031 3.969 18 C 0.038 3.962 19 C -0.123 4.123 20 O -0.327 6.327 21 C 0.013 3.987 22 C 0.016 3.984 23 O -0.323 6.323 24 H 0.020 0.980 25 H 0.047 0.953 26 H 0.085 0.915 27 H -0.013 1.013 28 H 0.025 0.975 29 H 0.267 0.733 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -21.452 19.338 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.274 5.274 3 C 0.043 3.957 4 C -0.554 4.554 5 H 0.059 0.941 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.769 3.231 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.177 1.177 12 C -0.066 4.066 13 C -0.100 4.100 14 C -0.075 4.075 15 C -0.129 4.129 16 C -0.134 4.134 17 C -0.013 4.013 18 C -0.007 4.007 19 C -0.141 4.141 20 O -0.242 6.242 21 C -0.062 4.062 22 C -0.059 4.059 23 O -0.238 6.238 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.005 0.995 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.391 -21.559 18.843 29.136 hybrid contribution 0.353 1.109 0.690 1.353 sum 5.744 -20.450 19.533 28.857 Atomic orbital electron populations 1.22264 0.87272 1.01736 0.99773 1.61832 1.08589 1.14582 1.42398 1.19946 0.94981 0.86042 0.94727 1.21283 1.34875 0.97499 1.01782 0.94133 1.25837 0.97017 0.98438 0.97645 1.70045 1.48627 1.13935 1.26266 0.85736 0.79461 0.77743 0.80134 1.19039 1.20559 1.17703 1.22095 0.99647 0.93557 0.91262 1.20467 1.01865 0.92107 0.95589 1.19669 0.93381 0.98034 0.96403 1.21088 1.01012 0.98996 0.91767 1.20671 0.92406 0.99768 1.00580 1.19063 0.94721 0.99333 0.88230 1.18987 0.85826 0.99895 0.95976 1.20484 0.96657 0.98513 0.98483 1.86281 1.27180 1.77103 1.33664 1.23959 0.97017 1.00907 0.84325 1.23933 0.85310 0.91928 1.04689 1.86266 1.48321 1.57238 1.31971 0.96155 0.93451 0.89642 0.99502 0.95698 0.92406 0.95012 0.91996 0.90508 0.89371 0.83134 0.83092 0.84962 0.83000 0.90552 0.90198 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 9.14 127.69 1.17 2.57 16 2 N -0.55 -22.90 4.75 -927.07 -4.41 -27.30 16 3 C 0.17 8.36 3.79 85.55 0.32 8.68 16 4 C -0.52 -30.35 9.01 25.60 0.23 -30.12 16 5 H 0.04 2.64 7.37 -2.91 -0.02 2.62 16 6 C 0.01 0.46 5.47 84.66 0.46 0.93 16 7 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 8 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 12 C 0.06 2.05 4.94 86.30 0.43 2.48 16 13 C -0.06 -1.65 5.27 29.85 0.16 -1.50 16 14 C -0.07 -1.82 5.13 -19.87 -0.10 -1.92 16 15 C -0.11 -2.37 9.69 22.26 0.22 -2.16 16 16 C -0.12 -2.46 9.96 22.37 0.22 -2.24 16 17 C 0.03 0.74 6.49 22.56 0.15 0.89 16 18 C 0.04 0.96 6.49 22.56 0.15 1.11 16 19 C -0.12 -3.19 9.61 22.37 0.22 -2.98 16 20 O -0.33 -7.53 10.42 -82.52 -0.86 -8.39 16 21 C 0.01 0.17 7.26 72.14 0.52 0.69 16 22 C 0.02 0.20 7.26 72.14 0.52 0.72 16 23 O -0.32 -6.60 10.42 -82.47 -0.86 -7.46 16 24 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 2.06 6.76 -2.39 -0.02 2.04 16 26 H 0.09 2.56 6.47 -2.38 -0.02 2.54 16 27 H -0.01 -0.62 7.18 -2.39 -0.02 -0.64 16 28 H 0.02 1.21 7.36 -2.39 -0.02 1.19 16 29 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 31 H 0.06 2.10 7.93 -2.38 -0.02 2.08 16 32 H 0.08 2.11 8.08 -2.39 -0.02 2.10 16 33 H 0.09 2.08 6.50 -2.38 -0.02 2.06 16 34 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -72.18 326.25 1.68 -70.50 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.97 Total: 8.49 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.66 Total: -22.84 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -4.11 Total: -86.91 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.72 Total: -15.84 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -72.18 1.68 -70.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258837414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.714 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds