Wall clock time and date at job start Mon Mar 30 2020 01:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46975 * 2 1 4 4 C 1.35902 * 117.00293 * 180.02562 * 3 2 1 5 5 C 1.38728 * 120.05328 * 359.72629 * 4 3 2 6 6 C 1.38148 * 119.94250 * 179.70304 * 5 4 3 7 7 C 1.38265 * 120.05598 * 0.59444 * 6 5 4 8 8 C 1.50692 * 119.94542 * 179.70362 * 7 6 5 9 9 C 1.53003 * 109.47143 * 269.97776 * 8 7 6 10 10 C 1.50699 * 109.47186 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00408 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00057 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99671 * 359.97438 * 12 10 9 14 14 C 1.37095 * 119.99831 * 179.97438 * 12 10 9 15 15 H 1.07998 * 120.00318 * 21.69570 * 14 12 10 16 16 C 1.38958 * 119.99397 * 201.70525 * 14 12 10 17 17 N 1.31404 * 120.00321 * 11.33643 * 16 14 12 18 18 Si 1.86802 * 119.99612 * 191.34412 * 16 14 12 19 19 H 1.48491 * 109.47477 * 85.06506 * 18 16 14 20 20 H 1.48499 * 109.47143 * 205.07160 * 18 16 14 21 21 H 1.48506 * 109.47013 * 325.06705 * 18 16 14 22 22 C 1.38270 * 120.10968 * 359.68107 * 7 6 5 23 23 C 1.38141 * 120.05345 * 0.02562 * 22 7 6 24 24 H 1.09004 * 109.46655 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47190 * 299.99739 * 1 2 3 26 26 H 1.08998 * 109.47042 * 60.00178 * 1 2 3 27 27 H 1.09003 * 109.47190 * 240.00261 * 2 1 3 28 28 H 1.09001 * 109.47774 * 119.99822 * 2 1 3 29 29 H 1.08004 * 120.03050 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.97213 * 180.27278 * 6 5 4 31 31 H 1.08999 * 109.47519 * 29.97634 * 8 7 6 32 32 H 1.08997 * 109.47368 * 149.97613 * 8 7 6 33 33 H 1.09002 * 109.46940 * 299.99793 * 9 8 7 34 34 H 1.08997 * 109.47122 * 59.99686 * 9 8 7 35 35 H 1.08998 * 109.47150 * 92.17788 * 13 12 10 36 36 H 1.09003 * 109.46502 * 212.17819 * 13 12 10 37 37 H 1.09002 * 109.47185 * 332.17353 * 13 12 10 38 38 H 0.96996 * 119.99948 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.97152 * 180.02562 * 22 7 6 40 40 H 1.07999 * 120.02636 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1998 0.4261 0.0047 6 6 5.5690 0.6099 -0.0021 7 6 6.0962 1.8880 -0.0016 8 6 7.5901 2.0856 -0.0023 9 6 8.0964 2.1522 1.4400 10 6 9.5903 2.3503 1.4394 11 8 10.1911 2.4299 0.3888 12 7 10.2589 2.4380 2.6064 13 6 9.5333 2.3413 3.8754 14 6 11.6181 2.6178 2.6058 15 1 12.1077 3.0318 1.7367 16 6 12.3657 2.2670 3.7233 17 7 11.8157 1.5636 4.6875 18 14 14.1525 2.7955 3.8551 19 1 14.2226 4.1682 4.4171 20 1 14.8816 1.8578 4.7463 21 1 14.7739 2.7806 2.5064 22 6 5.2549 2.9854 -0.0011 23 6 3.8851 2.8069 -0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8935 -0.5138 0.8900 29 1 3.7885 -0.5725 0.0096 30 1 6.2281 -0.2456 -0.0025 31 1 8.0668 1.2510 -0.5164 32 1 7.8334 3.0155 -0.5161 33 1 7.6197 2.9868 1.9542 34 1 7.8530 1.2222 1.9538 35 1 9.5215 1.3037 4.2090 36 1 10.0287 2.9584 4.6250 37 1 8.5100 2.6899 3.7363 38 1 12.3375 1.3191 5.4677 39 1 5.6691 3.9828 -0.0011 40 1 3.2284 3.6643 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259583772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:12 Heat of formation + Delta-G solvation = -54.434795 kcal Electronic energy + Delta-G solvation = -20592.803810 eV Core-core repulsion = 17372.824999 eV Total energy + Delta-G solvation = -3219.978811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20753 -38.57493 -37.69042 -34.72760 -33.25237 -31.85594 -31.46051 -30.89399 -28.63931 -26.25367 -24.89850 -24.18433 -23.24633 -22.02100 -20.73524 -18.61286 -18.33912 -16.83483 -16.29456 -16.16285 -16.04815 -15.05906 -14.73234 -14.52216 -14.12549 -14.05030 -13.56797 -13.55770 -13.44898 -12.87829 -12.71072 -12.62733 -12.07489 -11.90965 -11.59396 -11.50652 -11.37047 -11.15191 -10.96632 -10.87298 -10.83660 -10.67291 -10.43038 -10.32829 -10.14890 -8.98781 -8.97047 -8.38103 -7.97831 -7.64475 -6.26768 -3.83021 1.37193 1.46563 3.05717 3.19219 3.26864 3.32298 3.78444 3.96557 4.17850 4.62635 4.64263 4.83739 4.86605 4.90593 4.96146 5.16795 5.19127 5.24294 5.40682 5.45591 5.46841 5.63774 5.70404 5.73677 5.77525 5.96169 6.03809 6.16913 6.30749 6.37732 6.41824 6.49542 6.62451 6.83027 6.85234 6.94478 7.27919 7.36169 7.60348 8.17820 8.53729 9.23901 9.48861 10.04813 10.76720 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042639 B = 0.002883 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.520419 B = 9710.256165 C = 9984.674625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.116 3.884 5 C -0.206 4.206 6 C -0.078 4.078 7 C -0.106 4.106 8 C -0.059 4.059 9 C -0.122 4.122 10 C 0.445 3.555 11 O -0.593 6.593 12 N -0.450 5.450 13 C 0.113 3.887 14 C -0.304 4.304 15 H 0.098 0.902 16 C 0.028 3.972 17 N -0.886 5.886 18 Si 0.927 3.073 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.078 4.078 23 C -0.151 4.151 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.130 0.870 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.622 -2.445 -5.044 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.071 3.929 5 C -0.225 4.225 6 C -0.096 4.096 7 C -0.106 4.106 8 C -0.096 4.096 9 C -0.162 4.162 10 C 0.233 3.767 11 O -0.479 6.479 12 N -0.169 5.169 13 C -0.030 4.030 14 C -0.432 4.432 15 H 0.116 0.884 16 C -0.175 4.175 17 N -0.526 5.526 18 Si 0.754 3.246 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.096 4.096 23 C -0.169 4.169 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.406 -2.348 -5.339 20.264 hybrid contribution 0.886 -0.175 0.468 1.017 sum -18.521 -2.523 -4.870 19.316 Atomic orbital electron populations 1.21772 0.92903 1.02752 1.03447 1.22744 0.95695 0.82260 1.01388 1.86040 1.19366 1.29019 1.89028 1.18952 0.81960 0.94261 0.97744 1.21191 0.94364 0.97768 1.09172 1.20916 0.94075 0.97137 0.97438 1.20041 0.96475 0.92851 1.01282 1.20264 0.88794 1.03840 0.96742 1.21507 0.94990 1.02656 0.97072 1.20114 0.88725 0.83510 0.84341 1.90501 1.70103 1.56138 1.31129 1.43631 1.07190 1.61880 1.04178 1.21500 0.92224 1.02276 0.87041 1.19670 0.81641 1.39568 1.02367 0.88405 1.25338 1.00112 0.95785 0.96240 1.70002 1.37404 1.35745 1.09402 0.85933 0.82066 0.78237 0.78400 1.20368 1.21004 1.19455 1.20931 0.91895 0.99046 0.97747 1.20388 0.95190 0.94617 1.06717 0.90467 0.91543 0.91604 0.92157 0.92074 0.85824 0.85663 0.90567 0.90552 0.90591 0.90460 0.92546 0.91290 0.95513 0.92340 0.85246 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.73 10.14 -19.43 -0.20 -3.92 16 4 C 0.12 1.45 6.69 -39.22 -0.26 1.19 16 5 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16 6 C -0.08 -1.02 9.69 -39.60 -0.38 -1.40 16 7 C -0.11 -1.50 5.13 -104.60 -0.54 -2.04 16 8 C -0.06 -0.97 4.63 -27.89 -0.13 -1.10 16 9 C -0.12 -2.25 4.20 -27.88 -0.12 -2.37 16 10 C 0.44 10.94 7.63 -10.98 -0.08 10.85 16 11 O -0.59 -16.52 15.67 5.55 0.09 -16.44 16 12 N -0.45 -11.77 3.02 -122.19 -0.37 -12.14 16 13 C 0.11 2.59 8.52 59.85 0.51 3.10 16 14 C -0.30 -8.65 9.31 -14.93 -0.14 -8.79 16 15 H 0.10 2.91 7.39 -52.49 -0.39 2.52 16 16 C 0.03 0.75 5.12 -17.47 -0.09 0.66 16 17 N -0.89 -23.96 10.56 55.50 0.59 -23.37 16 18 Si 0.93 21.08 29.57 -169.99 -5.03 16.05 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.08 -1.01 9.69 -39.61 -0.38 -1.40 16 23 C -0.15 -1.88 9.99 -39.44 -0.39 -2.27 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 28 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 29 H 0.12 1.20 6.30 -52.48 -0.33 0.87 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 32 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 33 H 0.08 1.28 7.41 -51.93 -0.38 0.90 16 34 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 35 H 0.06 1.33 7.56 -51.93 -0.39 0.94 16 36 H 0.07 1.65 7.00 -51.93 -0.36 1.29 16 37 H 0.03 0.50 6.36 -51.93 -0.33 0.17 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -32.02 334.10 -7.58 -39.60 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.91 Total: 1.49 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.78 Total: -6.31 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.22 Total: -35.51 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.11 Total: -20.36 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.02 -7.58 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.837 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds