Wall clock time and date at job start Mon Mar 30 2020 01:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 119.99986 * 2 1 4 4 H 1.07996 * 119.99931 * 204.39502 * 3 2 1 5 5 C 1.38955 * 119.99799 * 24.39265 * 3 2 1 6 6 N 1.31410 * 120.00230 * 12.64156 * 5 3 2 7 7 Si 1.86799 * 119.99669 * 192.63964 * 5 3 2 8 8 H 1.48507 * 109.47067 * 90.00061 * 7 5 3 9 9 H 1.48496 * 109.47149 * 210.00121 * 7 5 3 10 10 H 1.48500 * 109.47223 * 330.00213 * 7 5 3 11 11 C 1.34769 * 120.00097 * 179.97438 * 2 1 3 12 12 O 1.21292 * 120.00501 * 180.02562 * 11 2 1 13 13 C 1.50706 * 119.99772 * 359.97438 * 11 2 1 14 14 C 1.53008 * 109.47062 * 179.97438 * 13 11 2 15 15 C 1.52993 * 109.47038 * 180.02562 * 14 13 11 16 16 O 1.42904 * 109.46915 * 180.02562 * 15 14 13 17 17 C 1.42904 * 113.99757 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46811 * 180.02562 * 17 16 15 19 19 C 1.38235 * 120.00711 * 89.99824 * 18 17 16 20 20 C 1.38230 * 120.00350 * 179.97438 * 19 18 17 21 21 C 1.38227 * 120.00094 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00101 * 0.28254 * 21 20 19 23 23 C 1.38233 * 119.99985 * 359.50636 * 22 21 20 24 24 H 1.09000 * 109.47451 * 265.86756 * 1 2 3 25 25 H 1.09002 * 109.47367 * 25.86236 * 1 2 3 26 26 H 1.08998 * 109.47262 * 145.86562 * 1 2 3 27 27 H 0.96998 * 119.99924 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46825 * 60.00562 * 13 11 2 29 29 H 1.08994 * 109.47681 * 300.00231 * 13 11 2 30 30 H 1.09009 * 109.46672 * 60.00107 * 14 13 11 31 31 H 1.08994 * 109.47109 * 300.00639 * 14 13 11 32 32 H 1.08997 * 109.47147 * 60.00155 * 15 14 13 33 33 H 1.09003 * 109.47271 * 299.99940 * 15 14 13 34 34 H 1.08992 * 109.47539 * 60.00016 * 17 16 15 35 35 H 1.09002 * 109.46642 * 299.99666 * 17 16 15 36 36 H 1.08008 * 119.99476 * 359.97438 * 19 18 17 37 37 H 1.08007 * 119.99765 * 180.02562 * 20 19 18 38 38 H 1.08007 * 119.99873 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.00175 * 179.72199 * 22 21 20 40 40 H 1.07997 * 120.00470 * 180.27985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4345 2.2492 1.1881 7 14 2.3237 4.0073 0.1827 8 1 1.7869 4.5720 -1.0816 9 1 2.0034 4.9213 1.3083 10 1 3.7968 3.8565 0.0713 11 6 2.1388 -1.1671 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0017 14 6 2.3796 -3.6352 0.0014 15 6 1.6146 -4.9602 0.0020 16 8 2.5432 -6.0464 0.0023 17 6 1.9286 -7.3365 0.0023 18 6 2.9953 -8.4010 0.0033 19 6 3.4838 -8.8889 1.2009 20 6 4.4619 -9.8658 1.2017 21 6 4.9511 -10.3550 0.0051 22 6 4.4664 -9.8634 -1.1925 23 6 3.4852 -8.8897 -1.1934 24 1 -0.3634 -0.0741 1.0250 25 1 -0.3634 0.9247 -0.4483 26 1 -0.3634 -0.8506 -0.5766 27 1 0.0142 3.0517 1.5347 28 1 0.7584 -2.5306 -0.8881 29 1 0.7589 -2.5295 0.8919 30 1 3.0069 -3.5771 0.8910 31 1 3.0056 -3.5779 -0.8890 32 1 0.9876 -5.0181 -0.8877 33 1 0.9883 -5.0178 0.8923 34 1 1.3087 -7.4436 -0.8878 35 1 1.3082 -7.4434 0.8922 36 1 3.1012 -8.5069 2.1359 37 1 4.8432 -10.2473 2.1375 38 1 5.7150 -11.1186 0.0058 39 1 4.8519 -10.2424 -2.1274 40 1 3.1033 -8.5087 -2.1291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263810916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:27 Heat of formation + Delta-G solvation = -59.307067 kcal Electronic energy + Delta-G solvation = -20164.943310 eV Core-core repulsion = 16944.753221 eV Total energy + Delta-G solvation = -3220.190089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.54746 -38.53440 -37.63855 -34.75228 -33.30647 -31.84740 -31.41213 -31.10271 -27.38632 -26.18934 -25.51595 -24.01862 -22.78393 -21.68959 -21.25732 -18.68294 -17.09015 -16.85225 -16.50212 -16.29719 -15.88009 -15.46927 -15.22695 -14.62487 -14.35407 -14.02051 -13.90992 -13.62122 -13.17515 -12.96191 -12.61127 -12.20400 -12.08889 -11.61603 -11.52267 -11.34258 -11.21781 -11.18562 -11.06778 -10.87030 -10.70459 -10.47842 -10.31741 -10.17795 -9.58496 -9.11675 -9.03512 -8.97589 -8.34004 -7.61927 -6.28955 -3.85010 1.06735 1.20594 3.18776 3.27055 3.32807 3.38929 3.93706 3.96968 4.19343 4.61326 4.64327 4.79889 4.90453 5.01948 5.05874 5.14280 5.18353 5.26453 5.30574 5.43382 5.45124 5.51577 5.76044 5.80315 5.82635 5.84309 5.99447 6.14822 6.23647 6.29165 6.40481 6.42855 6.57159 6.71710 6.77786 6.87701 7.21301 7.23908 7.60225 8.19215 8.53457 9.23514 9.47269 10.04228 10.76296 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045375 B = 0.002453 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.937308 B =11413.784204 C =11647.149086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.028 3.972 6 N -0.884 5.884 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.448 3.552 12 O -0.589 6.589 13 C -0.126 4.126 14 C -0.097 4.097 15 C 0.062 3.938 16 O -0.380 6.380 17 C 0.101 3.899 18 C -0.088 4.088 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.099 4.099 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.025 0.975 27 H 0.267 0.733 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 -21.786 -2.258 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.524 5.524 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.236 3.764 12 O -0.473 6.473 13 C -0.167 4.167 14 C -0.135 4.135 15 C -0.014 4.014 16 O -0.299 6.299 17 C 0.025 3.975 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.280 -21.588 -2.162 21.698 hybrid contribution -0.236 0.897 -0.003 0.928 sum -0.517 -20.691 -2.165 20.810 Atomic orbital electron populations 1.21460 0.81343 0.99827 1.00504 1.43598 1.05435 1.04841 1.63104 1.19655 1.00570 0.84248 1.38825 0.88512 1.25347 0.96706 1.00129 0.95242 1.69992 1.19339 1.29513 1.33570 0.85927 0.79674 0.81338 0.77776 1.20419 1.20989 1.19373 1.20045 0.88069 0.84887 0.83392 1.90520 1.14069 1.87225 1.55532 1.21427 0.98658 0.93901 1.02695 1.21167 0.97989 0.89781 1.04580 1.22635 0.91978 0.86910 0.99864 1.87997 1.33629 1.12932 1.95385 1.21280 0.92950 0.82508 1.00808 1.19670 0.98588 0.96914 0.93588 1.21101 0.96539 0.96378 0.97662 1.21152 0.97374 0.97509 0.98212 1.21190 0.99756 0.99950 0.92666 1.21150 0.97372 0.97545 0.98195 1.21096 0.96527 0.96428 0.97649 0.93088 0.90809 0.95620 0.92333 0.90540 0.90291 0.90645 0.90735 0.93431 0.93368 0.92560 0.92547 0.85867 0.85942 0.86102 0.85954 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 8.44 59.85 0.51 3.03 16 2 N -0.45 -11.80 3.01 -122.19 -0.37 -12.16 16 3 C -0.30 -8.70 9.24 -14.93 -0.14 -8.84 16 4 H 0.10 2.89 7.45 -52.49 -0.39 2.50 16 5 C 0.03 0.77 5.04 -17.47 -0.09 0.68 16 6 N -0.88 -23.95 10.83 55.50 0.60 -23.35 16 7 Si 0.93 21.10 29.57 -169.99 -5.03 16.08 16 8 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.45 11.13 7.63 -10.99 -0.08 11.05 16 12 O -0.59 -16.79 15.70 5.55 0.09 -16.70 16 13 C -0.13 -2.30 4.31 -27.88 -0.12 -2.42 16 14 C -0.10 -1.67 4.87 -26.73 -0.13 -1.80 16 15 C 0.06 0.84 5.94 37.15 0.22 1.06 16 16 O -0.38 -5.48 10.33 -35.23 -0.36 -5.85 16 17 C 0.10 1.11 6.06 36.00 0.22 1.33 16 18 C -0.09 -0.97 5.51 -104.62 -0.58 -1.55 16 19 C -0.10 -1.02 9.70 -39.59 -0.38 -1.41 16 20 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 21 C -0.12 -1.03 10.05 -39.59 -0.40 -1.42 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 24 H 0.05 1.16 7.83 -51.93 -0.41 0.76 16 25 H 0.07 1.75 6.80 -51.93 -0.35 1.40 16 26 H 0.03 0.47 6.61 -51.93 -0.34 0.12 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.08 1.22 7.41 -51.93 -0.38 0.83 16 29 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 30 H 0.07 1.43 8.10 -51.92 -0.42 1.01 16 31 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -32.93 338.80 -8.19 -41.12 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.07 Total: 0.53 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.15 Total: -4.76 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.23 Total: -35.52 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.28 Total: -22.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.93 -8.19 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263810916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.188 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds