Wall clock time and date at job start Mon Mar 30 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00358 * 2 1 4 4 C 1.38732 * 120.05589 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94129 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05970 * 0.02778 * 5 4 3 7 7 C 1.50700 * 119.94883 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47157 * 89.99343 * 7 6 5 9 9 C 1.52999 * 109.46806 * 180.02562 * 8 7 6 10 10 C 1.50710 * 109.46859 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99746 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99855 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00106 * 359.97438 * 12 10 9 14 14 C 1.37095 * 119.99814 * 179.97438 * 12 10 9 15 15 H 1.07996 * 120.00216 * 322.82535 * 14 12 10 16 16 C 1.38953 * 120.00032 * 142.82496 * 14 12 10 17 17 N 1.31411 * 120.00253 * 158.40514 * 16 14 12 18 18 Si 1.86806 * 119.99738 * 338.41097 * 16 14 12 19 19 H 1.48498 * 109.47300 * 95.72163 * 18 16 14 20 20 H 1.48507 * 109.46766 * 215.72216 * 18 16 14 21 21 H 1.48502 * 109.47005 * 335.71565 * 18 16 14 22 22 C 1.38271 * 120.10832 * 0.24705 * 6 5 4 23 23 C 1.38145 * 120.05674 * 359.44999 * 22 6 5 24 24 H 1.08995 * 109.47251 * 60.00208 * 1 2 3 25 25 H 1.09001 * 109.47754 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47506 * 300.00472 * 1 2 3 27 27 H 1.08005 * 120.02698 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.97145 * 179.97438 * 5 4 3 29 29 H 1.08991 * 109.47334 * 209.99769 * 7 6 5 30 30 H 1.09004 * 109.46991 * 329.99667 * 7 6 5 31 31 H 1.08991 * 109.47347 * 300.00419 * 8 7 6 32 32 H 1.09000 * 109.47065 * 60.00750 * 8 7 6 33 33 H 1.08998 * 109.47269 * 299.99884 * 9 8 7 34 34 H 1.09004 * 109.47289 * 60.00357 * 9 8 7 35 35 H 1.09006 * 109.46969 * 85.13336 * 13 12 10 36 36 H 1.08998 * 109.47171 * 205.13422 * 13 12 10 37 37 H 1.09003 * 109.47019 * 325.14138 * 13 12 10 38 38 H 0.96998 * 119.99660 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.96908 * 179.70665 * 22 6 5 40 40 H 1.07999 * 120.03075 * 180.24906 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3020 3.6756 0.0017 7 6 3.9862 5.0184 0.0028 8 6 4.2183 5.4737 -1.4393 9 6 4.9135 6.8367 -1.4380 10 6 5.1416 7.2855 -2.8585 11 8 4.7838 6.5841 -3.7810 12 7 5.7441 8.4659 -3.1037 13 6 6.1768 9.3129 -1.9894 14 6 5.9521 8.8740 -4.3959 15 1 6.2179 8.1522 -5.1540 16 6 5.8208 10.2163 -4.7303 17 7 6.4075 10.6853 -5.8086 18 14 4.8104 11.3542 -3.6468 19 1 5.7080 12.0598 -2.6973 20 1 4.1064 12.3493 -4.4951 21 1 3.8134 10.5580 -2.8870 22 6 1.9212 3.6046 0.0069 23 6 1.2915 2.3750 0.0000 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 4.0208 0.3797 0.0014 28 1 5.1346 2.5748 0.0019 29 1 3.3581 5.7458 0.5169 30 1 4.9440 4.9377 0.5170 31 1 4.8465 4.7464 -1.9534 32 1 3.2606 5.5545 -1.9534 33 1 4.2856 7.5643 -0.9238 34 1 5.8713 6.7556 -0.9240 35 1 7.1660 8.9983 -1.6567 36 1 6.2170 10.3518 -2.3170 37 1 5.4694 9.2187 -1.1655 38 1 6.3155 11.6222 -6.0421 39 1 1.3344 4.5113 0.0121 40 1 0.2129 2.3201 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263817194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:17 Heat of formation + Delta-G solvation = -47.750977 kcal Electronic energy + Delta-G solvation = -20560.725010 eV Core-core repulsion = 17341.036031 eV Total energy + Delta-G solvation = -3219.688979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27078 -38.75944 -37.88147 -34.98435 -34.11345 -32.02726 -31.21357 -30.51986 -27.98193 -26.67800 -26.20829 -24.46206 -22.77392 -22.06883 -20.67956 -18.63670 -18.30335 -17.02390 -16.45948 -16.01331 -15.93618 -15.70233 -15.27424 -15.06517 -14.46843 -14.07451 -13.69756 -13.57542 -13.32906 -13.15468 -12.63886 -12.42389 -12.32661 -12.22572 -12.16265 -11.85307 -11.43428 -11.39393 -10.97333 -10.86648 -10.85053 -10.74383 -10.35059 -10.32188 -9.90424 -9.09139 -9.04523 -8.44818 -8.14763 -7.70035 -6.36689 -3.93114 1.25115 1.33294 3.03892 3.08363 3.22742 3.27170 3.65494 3.80042 4.16646 4.48695 4.62816 4.73938 4.85201 4.86621 4.87897 5.01452 5.17011 5.17659 5.29146 5.37711 5.43351 5.51099 5.61477 5.71596 5.81316 5.91658 5.94792 5.95785 6.06171 6.14916 6.21303 6.29088 6.31507 6.43118 6.64531 6.66767 6.70628 7.23281 7.58410 8.32643 8.55725 9.01292 9.36057 9.83089 10.75807 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037574 B = 0.002923 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.017620 B = 9575.305596 C = 9598.608403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.108 4.108 7 C -0.079 4.079 8 C -0.094 4.094 9 C -0.136 4.136 10 C 0.462 3.538 11 O -0.567 6.567 12 N -0.475 5.475 13 C 0.065 3.935 14 C -0.316 4.316 15 H 0.104 0.896 16 C 0.056 3.944 17 N -0.867 5.867 18 Si 0.881 3.119 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.078 4.078 23 C -0.206 4.206 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.273 0.727 39 H 0.125 0.875 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 -13.979 17.030 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.168 4.168 5 C -0.095 4.095 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.132 4.132 9 C -0.177 4.177 10 C 0.251 3.749 11 O -0.448 6.448 12 N -0.198 5.198 13 C -0.079 4.079 14 C -0.443 4.443 15 H 0.122 0.878 16 C -0.149 4.149 17 N -0.503 5.503 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.096 4.096 23 C -0.224 4.224 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.143 0.857 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.792 -14.353 16.414 23.510 hybrid contribution -0.751 1.044 0.473 1.371 sum -9.544 -13.308 16.887 23.524 Atomic orbital electron populations 1.23026 0.78583 1.03745 1.01360 1.86047 1.21246 1.27170 1.88994 1.19019 0.92412 0.84033 0.97508 1.20409 0.91314 0.98657 1.06439 1.20902 0.99977 0.90965 0.97691 1.19876 0.93528 0.95534 1.01916 1.20639 1.00132 0.92786 0.98044 1.21275 1.01686 0.95795 0.94461 1.21656 1.01574 0.97951 0.96511 1.20345 0.80404 0.83895 0.90269 1.90551 1.53047 1.54775 1.46462 1.43729 1.52126 1.17841 1.06090 1.21976 0.99079 0.96469 0.90330 1.19063 1.46423 0.93910 0.84892 0.87821 1.25384 0.96045 0.97170 0.96295 1.69762 1.39051 1.15249 1.26268 0.86904 0.81390 0.80554 0.80238 1.20339 1.21540 1.18965 1.20873 0.94135 0.97016 0.97548 1.21201 0.99858 0.92412 1.08967 0.92624 0.88396 0.92780 0.85364 0.85234 0.91191 0.91058 0.91229 0.91331 0.90317 0.90260 0.93100 0.91770 0.92732 0.91668 0.85741 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.51 10.50 -19.42 -0.20 -3.71 16 3 C 0.12 1.35 6.69 -39.22 -0.26 1.09 16 4 C -0.15 -1.73 9.99 -39.43 -0.39 -2.12 16 5 C -0.08 -0.89 9.69 -39.61 -0.38 -1.27 16 6 C -0.11 -1.29 5.13 -104.60 -0.54 -1.83 16 7 C -0.08 -0.91 5.34 -27.88 -0.15 -1.05 16 8 C -0.09 -1.44 4.49 -26.73 -0.12 -1.56 16 9 C -0.14 -2.26 4.32 -27.88 -0.12 -2.38 16 10 C 0.46 10.84 7.63 -10.98 -0.08 10.75 16 11 O -0.57 -15.60 15.85 5.55 0.09 -15.51 16 12 N -0.48 -11.74 2.59 -122.19 -0.32 -12.05 16 13 C 0.07 1.28 8.78 59.85 0.53 1.81 16 14 C -0.32 -9.17 9.37 -14.93 -0.14 -9.31 16 15 H 0.10 3.39 7.90 -52.49 -0.41 2.97 16 16 C 0.06 1.59 5.29 -17.47 -0.09 1.49 16 17 N -0.87 -25.51 13.96 55.50 0.77 -24.74 16 18 Si 0.88 20.80 24.96 -169.99 -4.24 16.56 16 19 H -0.28 -6.02 6.69 56.52 0.38 -5.64 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.08 -0.89 9.69 -39.60 -0.38 -1.27 16 23 C -0.21 -2.26 9.04 -39.43 -0.36 -2.61 16 24 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.08 1.16 7.41 -51.93 -0.38 0.77 16 34 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.34 3.42 -51.93 -0.18 1.17 16 37 H 0.05 0.88 6.64 -51.93 -0.34 0.53 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -34.21 330.26 -6.25 -40.46 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.82 Total: 1.09 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.51 Total: -7.07 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.46 Total: -36.79 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.12 Total: -19.23 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.24 Total: 16.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.21 -6.25 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263817194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.293 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds