Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00358 * 2 1 4 4 C 1.38732 * 120.05589 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94129 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05970 * 0.02778 * 5 4 3 7 7 C 1.50700 * 119.94883 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47157 * 89.99343 * 7 6 5 9 9 C 1.52999 * 109.46806 * 180.02562 * 8 7 6 10 10 C 1.50710 * 109.46859 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99746 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99855 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00106 * 359.97438 * 12 10 9 14 14 C 1.37095 * 119.99814 * 179.97438 * 12 10 9 15 15 H 1.07996 * 120.00216 * 322.82535 * 14 12 10 16 16 C 1.38953 * 120.00032 * 142.82496 * 14 12 10 17 17 N 1.31411 * 120.00253 * 158.40514 * 16 14 12 18 18 Si 1.86806 * 119.99738 * 338.41097 * 16 14 12 19 19 H 1.48498 * 109.47300 * 95.72163 * 18 16 14 20 20 H 1.48507 * 109.46766 * 215.72216 * 18 16 14 21 21 H 1.48502 * 109.47005 * 335.71565 * 18 16 14 22 22 C 1.38271 * 120.10832 * 0.24705 * 6 5 4 23 23 C 1.38145 * 120.05674 * 359.44999 * 22 6 5 24 24 H 1.08995 * 109.47251 * 60.00208 * 1 2 3 25 25 H 1.09001 * 109.47754 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47506 * 300.00472 * 1 2 3 27 27 H 1.08005 * 120.02698 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.97145 * 179.97438 * 5 4 3 29 29 H 1.08991 * 109.47334 * 209.99769 * 7 6 5 30 30 H 1.09004 * 109.46991 * 329.99667 * 7 6 5 31 31 H 1.08991 * 109.47347 * 300.00419 * 8 7 6 32 32 H 1.09000 * 109.47065 * 60.00750 * 8 7 6 33 33 H 1.08998 * 109.47269 * 299.99884 * 9 8 7 34 34 H 1.09004 * 109.47289 * 60.00357 * 9 8 7 35 35 H 1.09006 * 109.46969 * 85.13336 * 13 12 10 36 36 H 1.08998 * 109.47171 * 205.13422 * 13 12 10 37 37 H 1.09003 * 109.47019 * 325.14138 * 13 12 10 38 38 H 0.96998 * 119.99660 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.96908 * 179.70665 * 22 6 5 40 40 H 1.07999 * 120.03075 * 180.24906 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3020 3.6756 0.0017 7 6 3.9862 5.0184 0.0028 8 6 4.2183 5.4737 -1.4393 9 6 4.9135 6.8367 -1.4380 10 6 5.1416 7.2855 -2.8585 11 8 4.7838 6.5841 -3.7810 12 7 5.7441 8.4659 -3.1037 13 6 6.1768 9.3129 -1.9894 14 6 5.9521 8.8740 -4.3959 15 1 6.2179 8.1522 -5.1540 16 6 5.8208 10.2163 -4.7303 17 7 6.4075 10.6853 -5.8086 18 14 4.8104 11.3542 -3.6468 19 1 5.7080 12.0598 -2.6973 20 1 4.1064 12.3493 -4.4951 21 1 3.8134 10.5580 -2.8870 22 6 1.9212 3.6046 0.0069 23 6 1.2915 2.3750 0.0000 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 4.0208 0.3797 0.0014 28 1 5.1346 2.5748 0.0019 29 1 3.3581 5.7458 0.5169 30 1 4.9440 4.9377 0.5170 31 1 4.8465 4.7464 -1.9534 32 1 3.2606 5.5545 -1.9534 33 1 4.2856 7.5643 -0.9238 34 1 5.8713 6.7556 -0.9240 35 1 7.1660 8.9983 -1.6567 36 1 6.2170 10.3518 -2.3170 37 1 5.4694 9.2187 -1.1655 38 1 6.3155 11.6222 -6.0421 39 1 1.3344 4.5113 0.0121 40 1 0.2129 2.3201 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263817194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = -70.281669 kcal Electronic energy + Delta-G solvation = -20561.702014 eV Core-core repulsion = 17341.036031 eV Total energy + Delta-G solvation = -3220.665983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07287 -40.52157 -38.73475 -36.79759 -35.36591 -34.10750 -32.04702 -31.59524 -28.86918 -28.13672 -27.55626 -26.06919 -23.63084 -23.23845 -21.61857 -20.40434 -19.08319 -19.03202 -17.82194 -17.32538 -17.26260 -16.63276 -16.56600 -16.29038 -15.55299 -15.30712 -15.07840 -14.66406 -14.52319 -14.33613 -14.15212 -14.00722 -13.83102 -13.44888 -13.17146 -12.86757 -12.71255 -12.56900 -12.47957 -12.27624 -11.90096 -11.78808 -11.75788 -11.73408 -11.44140 -11.04969 -10.33871 -9.92594 -9.68615 -8.99936 -8.51548 -6.14265 0.41896 0.47328 1.20535 1.33675 1.46610 2.00218 2.18643 2.40214 2.73657 2.85381 2.98540 3.86576 3.89888 3.97078 3.99187 4.16402 4.30629 4.36009 4.37812 4.40131 4.49630 4.51057 4.60535 4.67043 4.71743 4.77688 4.83803 4.86213 4.88931 5.00851 5.11038 5.28927 5.36324 5.43159 5.49867 5.55646 5.77923 5.87732 6.03152 6.46760 6.58423 6.96113 7.32990 7.91997 8.66396 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037574 B = 0.002923 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.017620 B = 9575.305596 C = 9598.608403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.103 3.897 4 C -0.166 4.166 5 C -0.085 4.085 6 C -0.125 4.125 7 C -0.065 4.065 8 C -0.088 4.088 9 C -0.122 4.122 10 C 0.450 3.550 11 O -0.624 6.624 12 N -0.490 5.490 13 C 0.057 3.943 14 C -0.339 4.339 15 H 0.037 0.963 16 C 0.004 3.996 17 N -0.916 5.916 18 Si 0.961 3.039 19 H -0.237 1.237 20 H -0.292 1.292 21 H -0.255 1.255 22 C -0.087 4.087 23 C -0.212 4.212 24 H 0.059 0.941 25 H 0.119 0.881 26 H 0.065 0.935 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.280 0.720 39 H 0.139 0.861 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 -12.948 20.882 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.058 3.942 4 C -0.185 4.185 5 C -0.103 4.103 6 C -0.125 4.125 7 C -0.103 4.103 8 C -0.127 4.127 9 C -0.162 4.162 10 C 0.241 3.759 11 O -0.509 6.509 12 N -0.212 5.212 13 C -0.085 4.085 14 C -0.467 4.467 15 H 0.055 0.945 16 C -0.197 4.197 17 N -0.553 5.553 18 Si 0.783 3.217 19 H -0.161 1.161 20 H -0.220 1.220 21 H -0.179 1.179 22 C -0.105 4.105 23 C -0.231 4.231 24 H 0.077 0.923 25 H 0.137 0.863 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.156 0.844 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.919 -13.322 20.305 26.233 hybrid contribution -0.382 0.577 -0.829 1.080 sum -10.300 -12.745 19.476 25.453 Atomic orbital electron populations 1.23306 0.76678 1.05461 1.02078 1.86024 1.23315 1.26993 1.88912 1.19250 0.92784 0.84671 0.97494 1.20653 0.91770 0.99225 1.06827 1.21137 1.00809 0.90948 0.97384 1.20044 0.93935 0.95902 1.02620 1.20541 1.01619 0.92827 0.95271 1.21193 0.99799 0.94857 0.96816 1.21681 1.04132 0.98898 0.91461 1.21678 0.78619 0.82683 0.92870 1.90519 1.54991 1.56284 1.49150 1.43920 1.52675 1.19037 1.05609 1.22258 1.01833 0.94811 0.89552 1.18666 1.48158 0.93377 0.86527 0.94482 1.26289 0.96366 0.98747 0.98323 1.69889 1.40363 1.16252 1.28827 0.85672 0.79590 0.77805 0.78604 1.16118 1.21972 1.17894 1.21150 0.94343 0.97771 0.97255 1.21456 1.00967 0.92087 1.08541 0.92270 0.86320 0.91618 0.84603 0.83936 0.89148 0.89053 0.93618 0.93689 0.86928 0.86810 0.90650 0.92869 0.88002 0.91066 0.84357 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.12 10.50 -92.40 -0.97 -8.09 16 3 C 0.10 2.34 6.69 22.51 0.15 2.49 16 4 C -0.17 -3.75 9.99 22.37 0.22 -3.53 16 5 C -0.08 -1.85 9.69 22.25 0.22 -1.63 16 6 C -0.12 -2.75 5.13 -19.85 -0.10 -2.85 16 7 C -0.07 -1.29 5.34 29.85 0.16 -1.13 16 8 C -0.09 -2.55 4.49 30.59 0.14 -2.41 16 9 C -0.12 -3.61 4.32 29.85 0.13 -3.48 16 10 C 0.45 20.96 7.63 87.66 0.67 21.62 16 11 O -0.62 -35.86 15.85 -3.05 -0.05 -35.91 16 12 N -0.49 -23.89 2.59 -658.88 -1.70 -25.59 16 13 C 0.06 2.02 8.78 127.77 1.12 3.15 16 14 C -0.34 -20.52 9.37 84.04 0.79 -19.73 16 15 H 0.04 2.65 7.90 -2.91 -0.02 2.63 16 16 C 0.00 0.24 5.29 84.93 0.45 0.69 16 17 N -0.92 -55.67 13.96 21.66 0.30 -55.37 16 18 Si 0.96 41.93 24.96 68.60 1.71 43.65 16 19 H -0.24 -8.83 6.69 99.48 0.67 -8.17 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 C -0.09 -1.85 9.69 22.26 0.22 -1.63 16 23 C -0.21 -4.37 9.04 22.37 0.20 -4.16 16 24 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 25 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 27 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.09 1.44 8.08 -2.39 -0.02 1.42 16 30 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 31 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 32 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.11 2.65 7.41 -2.39 -0.02 2.63 16 34 H 0.11 2.66 8.11 -2.39 -0.02 2.64 16 35 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.05 2.00 3.42 -2.39 -0.01 1.99 16 37 H 0.10 2.63 6.64 -2.39 -0.02 2.61 16 38 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.14 2.25 6.30 -2.91 -0.02 2.24 16 Total: -1.00 -81.19 330.26 5.75 -75.44 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.98 Total: 17.14 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 5.47 Total: -11.26 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -1.40 Total: -80.96 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.02 Total: -44.00 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.71 Total: 43.65 kcal Total: -81.19 5.75 -75.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263817194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.157 kcal (2) G-P(sol) polarization free energy of solvation -81.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds